mRNA_P-wetherbeei_contig16487.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16487.1.1
Unique NamemRNA_P-wetherbeei_contig16487.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16487.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16487contigP-wetherbeei_contig16487:20..364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008864735.1
Preferred nameNOC4L
PFAMsCBF
Model size345
Max annot lvl2759|Eukaryota
KEGG koko:K05387,ko:K12767,ko:K14771
KEGG TC1.A.10.1.10,1.A.10.1.18,1.A.10.1.7
KEGG Pathwayko04113,ko04138,ko04213,map04113,map04138,map04213
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140110,GO:1901360,GO:1903506,GO:1990904,GO:2000112,GO:2001141
Exons1
Evalue0.000316
EggNOG OGsKOG2154@1|root,KOG2154@2759|Eukaryota
EC2.7.11.1
Descriptionmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size345
COG categoryU
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186088.3114455-CDS-P-wetherbeei_contig16487:19..3641683186088.3114455-CDS-P-wetherbeei_contig16487:19..364Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16487 20..364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16487.1.1prot_P-wetherbeei_contig16487.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16487 20..364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16487.1.1

>prot_P-wetherbeei_contig16487.1.1 ID=prot_P-wetherbeei_contig16487.1.1|Name=mRNA_P-wetherbeei_contig16487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MAQVHAIRRLEQQIASNVEDANGILLLFDELRNGRDAATVAAAMQSLRRL
FAHFLRDELGDSSAEIVELHEKPAKKKPGKLAEAKQQPPPTALAAYHRWL
RERLGEYLSHLLSWV
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mRNA from alignment at P-wetherbeei_contig16487:20..364-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16487.1.1 ID=mRNA_P-wetherbeei_contig16487.1.1|Name=mRNA_P-wetherbeei_contig16487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig16487:20..364- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCAGGTGCACGCCATTCGACGACTCGAGCAGCAAATCGCCTCGAA
CGTCGAGGATGCGAATGGGATCCTCTTACTCTTCGACGAGCTTCGAAACG
GCCGCGATGCTGCCACAGTGGCCGCCGCGATGCAGTCGCTCCGGAGGCTG
TTTGCCCACTTTTTGAGGGATGAGCTCGGCGACTCGTCCGCGGAAATCGT
AGAGCTCCATGAAAAACCCGCCAAGAAGAAGCCAGGGAAATTGGCCGAGG
CAAAGCAGCAGCCGCCGCCAACGGCGCTCGCTGCCTACCACCGCTGGCTC
CGCGAGCGACTCGGGGAGTATCTTTCTCACTTGCTCTCCTGGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16487:20..364-

>mRNA_P-wetherbeei_contig16487.1.1 ID=mRNA_P-wetherbeei_contig16487.1.1|Name=mRNA_P-wetherbeei_contig16487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig16487:20..364- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCAGGTGCACGCCATTCGACGACTCGAGCAGCAAATCGCCTCGAA
CGTCGAGGATGCGAATGGGATCCTCTTACTCTTCGACGAGCTTCGAAACG
GCCGCGATGCTGCCACAGTGGCCGCCGCGATGCAGTCGCTCCGGAGGCTG
TTTGCCCACTTTTTGAGGGATGAGCTCGGCGACTCGTCCGCGGAAATCGT
AGAGCTCCATGAAAAACCCGCCAAGAAGAAGCCAGGGAAATTGGCCGAGG
CAAAGCAGCAGCCGCCGCCAACGGCGCTCGCTGCCTACCACCGCTGGCTC
CGCGAGCGACTCGGGGAGTATCTTTCTCACTTGCTCTCCTGGGTC
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