mRNA_P-wetherbeei_contig16474.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16474.1.1
Unique NamemRNA_P-wetherbeei_contig16474.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16474.1.1 vs. uniprot
Match: A0A7S2FW97_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FW97_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.910e-11
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 AKAVRNKAQTIMRQADADGSGTLSLEEFLVVAKKFPNILFPA 126
            AK+V  KA+TIM+QAD DGSG LSLEEF VV++KFPNILFPA
Sbjct:  722 AKSVERKAKTIMKQADKDGSGELSLEEFQVVSQKFPNILFPA 763
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BLAST of mRNA_P-wetherbeei_contig16474.1.1 vs. uniprot
Match: A0A7S1CJN1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJN1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.490e-11
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    7 AVRNKAQTIMRQADADGSGTLSLEEFLVVAKKFPNILFPA 126
            AVR KA+ IM+Q D DG GT+ LEEF+++AKKFPNILFPA
Sbjct:  199 AVRKKAEIIMKQGDKDGDGTIDLEEFVIIAKKFPNILFPA 238
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BLAST of mRNA_P-wetherbeei_contig16474.1.1 vs. uniprot
Match: A0A835Z432_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z432_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.090e-11
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 AKAVRNKAQTIMRQADADGSGTLSLEEFLVVAKKFPNILFP 123
            A AV  KA TIMRQADADGSGTLS E+F+ V ++FPNI FP
Sbjct:   54 AAAVAKKAATIMRQADADGSGTLSYEDFVTVVRRFPNICFP 94
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BLAST of mRNA_P-wetherbeei_contig16474.1.1 vs. uniprot
Match: A0A7S1CJB8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJB8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.960e-10
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    4 KAVRNKAQTIMRQADADGSGTLSLEEFLVVAKKFPNILFPA 126
            K V  KA+TIM QAD DG G +S +EF++V+KKFPNILFPA
Sbjct:  148 KEVLRKAETIMTQADKDGDGVISFDEFVIVSKKFPNILFPA 188
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BLAST of mRNA_P-wetherbeei_contig16474.1.1 vs. uniprot
Match: A0A2D4BKB2_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKB2_PYTIN)

HSP 1 Score: 61.2 bits (147), Expect = 8.120e-10
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 AKAVRNKAQTIMRQADADGSGTLSLEEFLVVAKKFPNILFPA 126
            A  VR KA+TIMRQAD +G G +SL+EF ++AKKFPN+LFP+
Sbjct:  744 ASQVRKKAETIMRQADDNGDGKMSLDEFAIIAKKFPNLLFPS 785
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BLAST of mRNA_P-wetherbeei_contig16474.1.1 vs. uniprot
Match: A0A2R5GMF7_9STRA (Calmodulin-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMF7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.140e-10
Identity = 26/39 (66.67%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    4 KAVRNKAQTIMRQADADGSGTLSLEEFLVVAKKFPNILF 120
            KAVR K  T+M+QAD DGSGT+ ++EFL++AKKFPN+LF
Sbjct:  784 KAVRRKVDTVMQQADRDGSGTVDIDEFLILAKKFPNLLF 822
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BLAST of mRNA_P-wetherbeei_contig16474.1.1 vs. uniprot
Match: A0A2D4C0T8_PYTIN (EF-hand domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0T8_PYTIN)

HSP 1 Score: 61.2 bits (147), Expect = 8.140e-10
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 AKAVRNKAQTIMRQADADGSGTLSLEEFLVVAKKFPNILFPA 126
            A  VR KA+TIMRQAD +G G +SL+EF ++AKKFPN+LFP+
Sbjct:    5 ASQVRKKAETIMRQADDNGDGKMSLDEFAIIAKKFPNLLFPS 46
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BLAST of mRNA_P-wetherbeei_contig16474.1.1 vs. uniprot
Match: A0A662Y1A8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1A8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.080e-9
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   10 VRNKAQTIMRQADADGSGTLSLEEFLVVAKKFPNILFPA 126
            VR KAQTI+RQAD DG G +SL+EF  +A+KFPN+LFP+
Sbjct:  842 VRKKAQTILRQADDDGDGRVSLDEFYAIARKFPNLLFPS 880
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BLAST of mRNA_P-wetherbeei_contig16474.1.1 vs. uniprot
Match: F0Y8R0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8R0_AURAN)

HSP 1 Score: 57.8 bits (138), Expect = 3.640e-9
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   10 VRNKAQTIMRQADADGSGTLSLEEFLVVAKKFPNILFPA 126
            V  KA TIM+QAD DG G ++ +EF++V+KKFPNILFPA
Sbjct:  122 VARKADTIMQQADKDGDGVVTFDEFVIVSKKFPNILFPA 160
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BLAST of mRNA_P-wetherbeei_contig16474.1.1 vs. uniprot
Match: A0A5D6XRG4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRG4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.260e-9
Identity = 25/39 (64.10%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   10 VRNKAQTIMRQADADGSGTLSLEEFLVVAKKFPNILFPA 126
            V+ KAQTI++QAD +G G +SL+EF V+AKKFPN+LFP+
Sbjct:  773 VQKKAQTILKQADDNGDGRMSLDEFYVIAKKFPNLLFPS 811
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16474.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2FW97_9STRA1.910e-1176.19Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1CJN1_9STRA4.490e-1170.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A835Z432_9STRA7.090e-1170.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1CJB8_9STRA7.960e-1065.85Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2D4BKB2_PYTIN8.120e-1064.29Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A2R5GMF7_9STRA8.140e-1066.67Calmodulin-1 n=1 Tax=Hondaea fermentalgiana TaxID=... [more]
A0A2D4C0T8_PYTIN8.140e-1064.29EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A662Y1A8_9STRA2.080e-966.67Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
F0Y8R0_AURAN3.640e-964.10Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A5D6XRG4_9STRA7.260e-964.10Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16474contigP-wetherbeei_contig16474:330..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000019992
PFAMsC2,EF-hand_7
Model size126
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.82e-10
EggNOG OGsCOG5038@1|root,COG5126@1|root,KOG0027@2759|Eukaryota,KOG0034@2759|Eukaryota,KOG1012@2759|Eukaryota,1MCPY@121069|Pythiales
DescriptionCalmodulin. Source PGD
Cds size126
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.9759488-CDS-P-wetherbeei_contig16474:329..4551683186087.9759488-CDS-P-wetherbeei_contig16474:329..455Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16474 330..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16474.1.1prot_P-wetherbeei_contig16474.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16474 330..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16474.1.1

>prot_P-wetherbeei_contig16474.1.1 ID=prot_P-wetherbeei_contig16474.1.1|Name=mRNA_P-wetherbeei_contig16474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=42bp
AKAVRNKAQTIMRQADADGSGTLSLEEFLVVAKKFPNILFPA
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mRNA from alignment at P-wetherbeei_contig16474:330..455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16474.1.1 ID=mRNA_P-wetherbeei_contig16474.1.1|Name=mRNA_P-wetherbeei_contig16474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig16474:330..455+ (Phaeothamnion wetherbeei SAG_119_79)
GCCAAGGCGGTGCGCAACAAGGCCCAGACCATCATGCGGCAGGCTGACGC
CGACGGCAGCGGCACGCTCAGCCTCGAGGAGTTCCTCGTCGTCGCCAAAA
AGTTCCCCAACATTCTCTTCCCAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16474:330..455+

>mRNA_P-wetherbeei_contig16474.1.1 ID=mRNA_P-wetherbeei_contig16474.1.1|Name=mRNA_P-wetherbeei_contig16474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig16474:330..455+ (Phaeothamnion wetherbeei SAG_119_79)
GCCAAGGCGGTGCGCAACAAGGCCCAGACCATCATGCGGCAGGCTGACGC
CGACGGCAGCGGCACGCTCAGCCTCGAGGAGTTCCTCGTCGTCGCCAAAA
AGTTCCCCAACATTCTCTTCCCAGCC
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