mRNA_P-wetherbeei_contig16459.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16459.1.1
Unique NamemRNA_P-wetherbeei_contig16459.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI0006A6F885 (uncharacterized protein LOC106316991 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6F885)

HSP 1 Score: 82.0 bits (201), Expect = 8.970e-16
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    7 VDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILND-NKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKAN 312
            +D TF+K     G LL  +GHD N + Y +A+A+V  E  D++ WF + +K     + +L D N+ VI SDR KGL SA+++ELP A H  C  H   N+K N
Sbjct:   98 LDGTFLKR-AVKGVLLTAVGHDTNNQIYPIAWAVVQSETTDSWLWFIKKIKH----DLVLQDWNRFVIISDRSKGLKSAMESELPNAEHRKCVKHIAENVKKN 195          
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: A0A6J0LT38_RAPSA (uncharacterized protein LOC108834178 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0LT38_RAPSA)

HSP 1 Score: 81.6 bits (200), Expect = 1.320e-15
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    7 VDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILND-NKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLK 306
            +D TF+K     G LL  +GHD N + Y +A+A+V  E  D++ WF + +K     + +L D N+ VI SDR KGL SA+++ELP A H  C  H + N+K
Sbjct:  227 LDGTFLKR-AVKGVLLTAVGHDANNQIYPIAWAVVQSETTDSWLWFIKKIKD----DLVLQDGNRFVIISDRSKGLKSAMESELPNAEHRKCVKHIVENVK 322          
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: A0A6J0LSF2_RAPSA (uncharacterized protein LOC108834338 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0LSF2_RAPSA)

HSP 1 Score: 81.6 bits (200), Expect = 1.330e-15
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKANPRVPN-LGPNV-KLAWDMQK 366
            G+D TF+K     G LL  +GHDGN + +  A+A+V  E+ D + WF + +K   S+    + +  V+ SD  KGL SA+Q+ELP A H  C  H + NLK   +  + L P V  LAW   K
Sbjct:  363 GLDGTFLKTE-VKGILLTAVGHDGNNQIFPFAWAVVQAESTDTWLWFIKRLKYDLSLG---DGSNYVLLSDSSKGLISAIQSELPNAEHRRCVKHIVENLKKKHKNKSFLKPRVWNLAWSYNK 481          
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI0006AB0E48 (uncharacterized protein LOC106359127 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB0E48)

HSP 1 Score: 81.6 bits (200), Expect = 1.340e-15
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 1
Query:    4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKANPRVPNLGPNV--KLAW 354
            G+D TF+K     G LL  IGHDGN + Y  A+ALV  E  D + WF + +K    +    +  K V+ SD  KGL SA+++ELP A H  C  H + NLK   +  +L   V   LAW
Sbjct:  355 GLDGTFLKQE-VKGILLTAIGHDGNNQIYPFAWALVQGETADTWLWFIKQLKRDLKLG---DGEKFVLLSDSSKGLISAIESELPKAEHRRCVKHIVENLKKKHKKKDLLKLVVWNLAW 469          
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: A0A6J0NGL4_RAPSA (uncharacterized protein LOC108853986 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NGL4_RAPSA)

HSP 1 Score: 81.3 bits (199), Expect = 1.830e-15
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLK 306
            G+D TF+K     G LL  +GHDGN + Y +A+A+V  EN D + WF + +K   ++    +  K V+ SD  KGL SA++ ELP A H  C  H + NLK
Sbjct:  354 GLDGTFLK-VATKGILLTAVGHDGNNQIYPIAWAVVQGENSDTWLWFIKRLKHDLNLG---DGRKFVLLSDSSKGLISAIEEELPQAEHRRCVKHIVENLK 450          
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI000CED0C78 (uncharacterized protein LOC112083091 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED0C78)

HSP 1 Score: 80.5 bits (197), Expect = 3.360e-15
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKA-NPRVPNL-GPNVKLAW 354
            GVD  F+K     G+L +  G D + R Y +A+A+V KEN +N+ WFF+ +KA   +    + +  V+ SDR KG  +AV+ ELP   H  C  H   NLKA N + P L G    LAW
Sbjct:  277 GVDGCFLKTV-QKGELFIANGRDADNRIYPIAWAVVQKENTNNWSWFFQKIKADLELG---DGDGYVLVSDRQKGFLAAVKDELPKIEHRMCVRHIYMNLKARNAKKPELKGLIWNLAW 391          
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI000CED0861 (uncharacterized protein LOC112086498 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED0861)

HSP 1 Score: 79.3 bits (194), Expect = 8.560e-15
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKA-NPRVPNLGPNV-KLAW 354
            GVD  F+K+    G+L +  G D + R Y +A+A+V KEN +N+ WFFR +K    +    + +  ++ SDR KGL SAV+ ELP   H  C  H   N+K+ + ++P L   +  LAW
Sbjct:  275 GVDGCFLKSV-QKGELFVANGRDADNRIYPIAWAVVQKENTNNWAWFFRKIKVDLGLG---DGDGYILVSDRQKGLLSAVKEELPLIEHRMCVRHIYMNVKSRHGKMPELKTMIWHLAW 389          
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI0006A74DCB (uncharacterized protein LOC106323209 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A74DCB)

HSP 1 Score: 77.8 bits (190), Expect = 2.300e-14
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1
Query:    4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKT-VIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKA-NPRVPNLGPNV-KLAWDMQK 366
            G+D  F+K+    GQ+L+ +G D +   Y VA+ +V  EN DN+ WF R VK     +  LND +  ++ SDR KGL SAVQ ELP   H  C  H   NLK  +    ++ P + +LAW   K
Sbjct:  275 GLDGCFVKHK-IKGQVLVALGRDADNAIYPVAWGVVQVENTDNWLWFVRMVKK----DLGLNDGEGFILISDRQKGLISAVQQELPKIEHRMCVRHIYGNLKKKHGSKSDMKPYIWRLAWSYNK 393          
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI000CED0EB7 (uncharacterized protein LOC112087606 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED0EB7)

HSP 1 Score: 76.6 bits (187), Expect = 7.520e-14
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKA-NPRVPNL 330
            GVD  F+K+    G+L + +G D +   Y +A+A+V KEN DN++WFF  +KA   +E   + +  V+ SDR KGL + V   LP   H  C  H   N+K+ + ++P L
Sbjct:  276 GVDGCFLKSV-QKGELFVAMGRDADNAIYPIAWAVVQKENTDNWQWFFTKIKADLGLE---DGDGYVLVSDRQKGLINVVMQVLPKIEHRMCVRHIYMNVKSRHSKMPEL 381          
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Match: UPI0006AA82C6 (uncharacterized protein LOC106359028 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AA82C6)

HSP 1 Score: 76.3 bits (186), Expect = 9.820e-14
Identity = 42/103 (40.78%), Postives = 55/103 (53.40%), Query Frame = 1
Query:    4 GVDATFMKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGESMEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKAN 312
            GVD  F+K+    GQLL+ +G D +   Y +A+  V  EN +N+ WF R +K    +   L     ++ SDR KGL SAVQ ELP   H  C  H   NLK N
Sbjct:   88 GVDGCFLKHK-VKGQLLVALGRDADNAIYPIAWGAVQVENTENWLWFVRKIKHDLGLNQGLG---YILVSDRQKGLISAVQTELPQIEHRMCVRHIYGNLKKN 186          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16459.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0006A6F8858.970e-1641.75uncharacterized protein LOC106316991 n=1 Tax=Brass... [more]
A0A6J0LT38_RAPSA1.320e-1541.58uncharacterized protein LOC108834178 n=1 Tax=Rapha... [more]
A0A6J0LSF2_RAPSA1.330e-1539.02uncharacterized protein LOC108834338 n=1 Tax=Rapha... [more]
UPI0006AB0E481.340e-1540.34uncharacterized protein LOC106359127 n=1 Tax=Brass... [more]
A0A6J0NGL4_RAPSA1.830e-1541.58uncharacterized protein LOC108853986 n=1 Tax=Rapha... [more]
UPI000CED0C783.360e-1540.34uncharacterized protein LOC112083091 n=1 Tax=Eutre... [more]
UPI000CED08618.560e-1537.82uncharacterized protein LOC112086498 n=1 Tax=Eutre... [more]
UPI0006A74DCB2.300e-1439.52uncharacterized protein LOC106323209 n=1 Tax=Brass... [more]
UPI000CED0EB77.520e-1437.27uncharacterized protein LOC112087606 n=1 Tax=Eutre... [more]
UPI0006AA82C69.820e-1440.78uncharacterized protein LOC106359028 n=1 Tax=Brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16459contigP-wetherbeei_contig16459:512..877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog90675.XP_010484982.1
PFAMsDBD_Tnp_Mut,MULE,SWIM
Model size366
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.28e-14
EggNOG OGs2CN5X@1|root,2QU1T@2759|Eukaryota,37T40@33090|Viridiplantae,3GGBN@35493|Streptophyta,3HVMH@3699|Brassicales
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.6322174-CDS-P-wetherbeei_contig16459:511..8561683186087.6322174-CDS-P-wetherbeei_contig16459:511..856Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16459 512..856 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.6402345-UTR-P-wetherbeei_contig16459:856..8771683186087.6402345-UTR-P-wetherbeei_contig16459:856..877Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16459 857..877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16459.1.1prot_P-wetherbeei_contig16459.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16459 512..856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16459.1.1

>prot_P-wetherbeei_contig16459.1.1 ID=prot_P-wetherbeei_contig16459.1.1|Name=mRNA_P-wetherbeei_contig16459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MKNPGYNGQLLLPIGHDGNRRNYVVAFALVPKENLDNYEWFFRHVKAGES
MEAILNDNKTVIFSDRDKGLASAVQAELPAANHLACFAHPLRNLKANPRV
PNLGPNVKLAWDMQK
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mRNA from alignment at P-wetherbeei_contig16459:512..877-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16459.1.1 ID=mRNA_P-wetherbeei_contig16459.1.1|Name=mRNA_P-wetherbeei_contig16459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig16459:512..877- (Phaeothamnion wetherbeei SAG_119_79)
TTTGGCGTGGATGCCACCTTCATGAAGAATCCGGGCTACAACGGGCAGCT CCTTCTGCCCATCGGGCATGATGGGAACCGCCGCAACTACGTTGTCGCCT TCGCGCTTGTGCCCAAGGAGAACCTGGACAACTACGAGTGGTTCTTCCGC CACGTCAAGGCAGGGGAGAGCATGGAGGCCATCTTGAATGACAACAAGAC AGTCATCTTCAGTGATCGCGACAAGGGGCTGGCATCCGCCGTCCAAGCCG AACTTCCGGCGGCCAACCACCTGGCGTGCTTCGCACACCCGCTGCGGAAC CTCAAGGCCAACCCCAGGGTGCCCAACTTGGGGCCCAATGTCAAGCTCGC ATGGGACATGCAGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16459:512..877-

>mRNA_P-wetherbeei_contig16459.1.1 ID=mRNA_P-wetherbeei_contig16459.1.1|Name=mRNA_P-wetherbeei_contig16459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig16459:512..877- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAATCCGGGCTACAACGGGCAGCTCCTTCTGCCCATCGGGCATGA
TGGGAACCGCCGCAACTACGTTGTCGCCTTCGCGCTTGTGCCCAAGGAGA
ACCTGGACAACTACGAGTGGTTCTTCCGCCACGTCAAGGCAGGGGAGAGC
ATGGAGGCCATCTTGAATGACAACAAGACAGTCATCTTCAGTGATCGCGA
CAAGGGGCTGGCATCCGCCGTCCAAGCCGAACTTCCGGCGGCCAACCACC
TGGCGTGCTTCGCACACCCGCTGCGGAACCTCAAGGCCAACCCCAGGGTG
CCCAACTTGGGGCCCAATGTCAAGCTCGCATGGGACATGCAGAAG
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