mRNA_P-wetherbeei_contig16417.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16417.2.1
Unique NamemRNA_P-wetherbeei_contig16417.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16417.2.1 vs. uniprot
Match: A0A6M5YUB3_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YUB3_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 6.470e-23
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 PGAEKQGAILAFLEHEFPDMTRDERLGLLSKILGALYSDDPGIGINRPSR 150
            PGAEKQ  ILAFLEHEFPDMTR+ERLGLLSKILG LYS DPGIGINRPSR
Sbjct:  173 PGAEKQSMILAFLEHEFPDMTRNERLGLLSKILGTLYSYDPGIGINRPSR 222
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16417.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6M5YUB3_9BACT6.470e-2390.00Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16417contigP-wetherbeei_contig16417:1358..1516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.4458456-CDS-P-wetherbeei_contig16417:1357..15161683186086.4458456-CDS-P-wetherbeei_contig16417:1357..1516Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16417 1358..1516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16417.2.1prot_P-wetherbeei_contig16417.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16417 1358..1516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16417.2.1

>prot_P-wetherbeei_contig16417.2.1 ID=prot_P-wetherbeei_contig16417.2.1|Name=mRNA_P-wetherbeei_contig16417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
PGAEKQGAILAFLEHEFPDMTRDERLGLLSKILGALYSDDPGIGINRPSR
ED*
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mRNA from alignment at P-wetherbeei_contig16417:1358..1516-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16417.2.1 ID=mRNA_P-wetherbeei_contig16417.2.1|Name=mRNA_P-wetherbeei_contig16417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig16417:1358..1516- (Phaeothamnion wetherbeei SAG_119_79)
CCGGGTGCCGAAAAGCAGGGCGCGATCCTGGCGTTCCTCGAACACGAGTT
CCCCGACATGACACGGGACGAGCGCCTCGGCCTGCTCAGCAAGATACTGG
GCGCCCTGTATTCGGATGACCCGGGTATCGGGATCAATCGCCCGAGCCGC
GAGGACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16417:1358..1516-

>mRNA_P-wetherbeei_contig16417.2.1 ID=mRNA_P-wetherbeei_contig16417.2.1|Name=mRNA_P-wetherbeei_contig16417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig16417:1358..1516- (Phaeothamnion wetherbeei SAG_119_79)
CCGGGTGCCGAAAAGCAGGGCGCGATCCTGGCGTTCCTCGAACACGAGTT
CCCCGACATGACACGGGACGAGCGCCTCGGCCTGCTCAGCAAGATACTGG
GCGCCCTGTATTCGGATGACCCGGGTATCGGGATCAATCGCCCGAGCCGC
GAGGACTAA
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