mRNA_P-wetherbeei_contig16412.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16412.1.1
Unique NamemRNA_P-wetherbeei_contig16412.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A103YHF9_CYNCS (Nucleotide-binding, alpha-beta plait (Fragment) n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103YHF9_CYNCS)

HSP 1 Score: 60.5 bits (145), Expect = 9.120e-9
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    4 IDAEKLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVKAKK 219
            +D ++L  +F+ HG V+ A+V  D  TG++ G+ FVTMA+E     AIAALDG S+  R+I V +A+ + K+
Sbjct:  248 VDNDRLEQVFNEHGKVVDARVIYDRETGRSRGFGFVTMASETEMNDAIAALDGQSLDGREIRVNIAEERPKR 319          
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: UPI001745E4AA (RNA-binding protein n=1 Tax=Mucilaginibacter pankratovii TaxID=2772110 RepID=UPI001745E4AA)

HSP 1 Score: 55.8 bits (133), Expect = 5.350e-8
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   16 KLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVK 210
            +L ++F AHG V    + TD  TG + GY F+TM  +A  + AI ALDG ++ +R I VR+A+ K
Sbjct:   17 ELVEMFTAHGTVNTVTIVTDKTTGDSKGYGFITMTDDAGAERAIHALDGVTIDDRTISVRMAEEK 81          
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: UPI00131C5AF8 (RNA-binding protein n=1 Tax=Mucilaginibacter sp. JXJ CY 39 TaxID=2684211 RepID=UPI00131C5AF8)

HSP 1 Score: 55.5 bits (132), Expect = 7.550e-8
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   19 LADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVKAKKPPRA 231
            LA LF  HG V   ++  D  TG   GYAF+ MATE      IAALDG+ +G+R + V++++ K   P RA
Sbjct:   18 LAKLFSPHGTVSTIKIVRDRKTGTCKGYAFIEMATEEDALNVIAALDGTPMGDRNLNVKISEEKPAAPIRA 88          
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: UPI001F278E67 (RNA-binding protein n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F278E67)

HSP 1 Score: 54.7 bits (130), Expect = 1.020e-7
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    4 IDAEKLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVKAKKPPRANG 237
            +  E L D F  +G V + QVPTD  TG+A G+AFV M +EA  +AAI ALDG+    R ++V  A  +  + P   G
Sbjct:   12 VTQEDLKDTFGEYGTVNRVQVPTDRETGRARGFAFVDMGSEAEEEAAIEALDGAEWMGRDLKVNKARPREDRGPSGGG 89          
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A4Q6DVS9_9SPHI (RNA-binding protein n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q6DVS9_9SPHI)

HSP 1 Score: 54.7 bits (130), Expect = 1.440e-7
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   16 KLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVK 210
            +L +LF  HG+V    +  D AT  + GY F+ MA +A    AIAALDG ++ ER++ VR+AD K
Sbjct:   17 ELMELFSVHGVVDTLTIVRDQATNVSKGYGFMHMADQAGADRAIAALDGFTIDERQLSVRIADDK 81          
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A364WWW9_9SPHI (RNA-binding protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A364WWW9_9SPHI)

HSP 1 Score: 54.7 bits (130), Expect = 1.470e-7
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   16 KLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLAD 204
            +L ++F  +G V    + TD  TG++ GY F+ M+  A  + AI ALDG+++ ERKI VR+AD
Sbjct:   17 ELTEIFRGYGSVNTVTIITDKVTGESQGYGFIEMSDRAGAEQAIKALDGATIDERKISVRIAD 79          
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A2N9NJ30_9BACT (Putative RNA-binding protein RbpA n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2N9NJ30_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.540e-7
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   19 LADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVKAKK 219
            L D F AHG V++A +  D A+G+  G+ FVTM++    + AIAAL+G+ +G+R I V  A  KA++
Sbjct:   19 LRDAFAAHGTVLEANLMVDRASGRPRGFGFVTMSSPEEAQKAIAALNGTRLGDRDITVNEARTKAER 85          
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A832BCU7_9BACT (RNA-binding protein n=1 Tax=Chthonomonadetes bacterium TaxID=2282152 RepID=A0A832BCU7_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.700e-7
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   10 AEKLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVKAKKPPRAN 234
            A++L  LF  +G V+ + + TD  TG+A G+AFV M  +    AAIAAL+GS  G R++ V +A  + + P R++
Sbjct:   16 ADQLEALFKPYGQVVDSIIVTDKVTGQARGFAFVEMKNDGEADAAIAALNGSEYGGRRLVVNVARERERPPRRSS 90          
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A0F5AUJ7_9GAMM (RNA recognition motif containing protein n=15 Tax=Vibrionaceae TaxID=641 RepID=A0A0F5AUJ7_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 2.410e-7
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   16 KLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLAD 204
            +L  LF  HG V +  +  D  TG++ G+AFVTM  E   KAA+AAL+ SSV + KI V++A+
Sbjct:   16 QLRQLFSEHGDVTECNLVLDQETGESKGFAFVTMPDETQAKAAMAALNLSSVAKSKIRVKVAN 78          
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A3S5K1J4_9GAMM (RNA-binding protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3S5K1J4_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 2.490e-7
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    4 IDAEKLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEV 192
            +  E L  LF +HG V+ AQV  D  +G++ G+ FV M+++   +AAIAAL+G+S+G R + V
Sbjct:   14 VSNEDLEQLFASHGTVVSAQVIRDRDSGRSKGFGFVEMSSDQEAQAAIAALNGNSIGGRNLTV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A103YHF9_CYNCS9.120e-943.06Nucleotide-binding, alpha-beta plait (Fragment) n=... [more]
UPI001745E4AA5.350e-843.08RNA-binding protein n=1 Tax=Mucilaginibacter pankr... [more]
UPI00131C5AF87.550e-843.66RNA-binding protein n=1 Tax=Mucilaginibacter sp. J... [more]
UPI001F278E671.020e-742.31RNA-binding protein n=1 Tax=Leptodesmis sichuanens... [more]
A0A4Q6DVS9_9SPHI1.440e-744.62RNA-binding protein n=1 Tax=Sphingobacteriaceae ba... [more]
A0A364WWW9_9SPHI1.470e-742.86RNA-binding protein n=2 Tax=Bacteroidetes TaxID=97... [more]
A0A2N9NJ30_9BACT1.540e-743.28Putative RNA-binding protein RbpA n=1 Tax=Verrucom... [more]
A0A832BCU7_9BACT1.700e-740.00RNA-binding protein n=1 Tax=Chthonomonadetes bacte... [more]
A0A0F5AUJ7_9GAMM2.410e-746.03RNA recognition motif containing protein n=15 Tax=... [more]
A0A3S5K1J4_9GAMM2.490e-742.86RNA-binding protein n=1 Tax=Candidatus Competibact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16412contigP-wetherbeei_contig16412:1..267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog218851.Aquca_056_00035.1
PFAMsRRM_1
Model size267
Max annot lvl35493|Streptophyta
KEGG koko:K11294
KEGG Pathwayko05130,map05130
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.32e-09
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota,37MBR@33090|Viridiplantae,3GC3A@35493|Streptophyta
DescriptionkDa ribonucleoprotein
Cds size267
COG categoryA
BRITEko00000,ko00001,ko03009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.3424-CDS-P-wetherbeei_contig16412:0..2671683186086.3424-CDS-P-wetherbeei_contig16412:0..267Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16412 1..267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16412.1.1prot_P-wetherbeei_contig16412.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16412 1..267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16412.1.1

>prot_P-wetherbeei_contig16412.1.1 ID=prot_P-wetherbeei_contig16412.1.1|Name=mRNA_P-wetherbeei_contig16412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
GIDAEKLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIA
ALDGSSVGERKIEVRLADVKAKKPPRANGARRRPTRPQM
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mRNA from alignment at P-wetherbeei_contig16412:1..267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16412.1.1 ID=mRNA_P-wetherbeei_contig16412.1.1|Name=mRNA_P-wetherbeei_contig16412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig16412:1..267+ (Phaeothamnion wetherbeei SAG_119_79)
GGCATCGACGCCGAGAAGCTCGCCGACCTGTTCGACGCGCACGGCATCGT CATCCAGGCCCAGGTCCCGACCGACCCGGCGACCGGCAAGGCGATCGGCT ACGCCTTCGTGACGATGGCGACCGAGGCGCATTGCAAGGCCGCGATCGCC GCCCTCGACGGCTCGAGCGTCGGCGAGCGCAAGATCGAAGTGCGCCTGGC CGACGTCAAGGCCAAGAAGCCGCCGCGCGCCAACGGCGCGCGCCGCCGCC CGACGCGCCCGCAGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16412:1..267+

>mRNA_P-wetherbeei_contig16412.1.1 ID=mRNA_P-wetherbeei_contig16412.1.1|Name=mRNA_P-wetherbeei_contig16412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig16412:1..267+ (Phaeothamnion wetherbeei SAG_119_79)
GGCATCGACGCCGAGAAGCTCGCCGACCTGTTCGACGCGCACGGCATCGT
CATCCAGGCCCAGGTCCCGACCGACCCGGCGACCGGCAAGGCGATCGGCT
ACGCCTTCGTGACGATGGCGACCGAGGCGCATTGCAAGGCCGCGATCGCC
GCCCTCGACGGCTCGAGCGTCGGCGAGCGCAAGATCGAAGTGCGCCTGGC
CGACGTCAAGGCCAAGAAGCCGCCGCGCGCCAACGGCGCGCGCCGCCGCC
CGACGCGCCCGCAGATG
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