mRNA_P-wetherbeei_contig16412.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A103YHF9_CYNCS (Nucleotide-binding, alpha-beta plait (Fragment) n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103YHF9_CYNCS) HSP 1 Score: 60.5 bits (145), Expect = 9.120e-9 Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 4 IDAEKLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVKAKK 219
+D ++L +F+ HG V+ A+V D TG++ G+ FVTMA+E AIAALDG S+ R+I V +A+ + K+
Sbjct: 248 VDNDRLEQVFNEHGKVVDARVIYDRETGRSRGFGFVTMASETEMNDAIAALDGQSLDGREIRVNIAEERPKR 319
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: UPI001745E4AA (RNA-binding protein n=1 Tax=Mucilaginibacter pankratovii TaxID=2772110 RepID=UPI001745E4AA) HSP 1 Score: 55.8 bits (133), Expect = 5.350e-8 Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 16 KLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVK 210
+L ++F AHG V + TD TG + GY F+TM +A + AI ALDG ++ +R I VR+A+ K
Sbjct: 17 ELVEMFTAHGTVNTVTIVTDKTTGDSKGYGFITMTDDAGAERAIHALDGVTIDDRTISVRMAEEK 81
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: UPI00131C5AF8 (RNA-binding protein n=1 Tax=Mucilaginibacter sp. JXJ CY 39 TaxID=2684211 RepID=UPI00131C5AF8) HSP 1 Score: 55.5 bits (132), Expect = 7.550e-8 Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 19 LADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVKAKKPPRA 231
LA LF HG V ++ D TG GYAF+ MATE IAALDG+ +G+R + V++++ K P RA
Sbjct: 18 LAKLFSPHGTVSTIKIVRDRKTGTCKGYAFIEMATEEDALNVIAALDGTPMGDRNLNVKISEEKPAAPIRA 88
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: UPI001F278E67 (RNA-binding protein n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F278E67) HSP 1 Score: 54.7 bits (130), Expect = 1.020e-7 Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 4 IDAEKLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVKAKKPPRANG 237
+ E L D F +G V + QVPTD TG+A G+AFV M +EA +AAI ALDG+ R ++V A + + P G
Sbjct: 12 VTQEDLKDTFGEYGTVNRVQVPTDRETGRARGFAFVDMGSEAEEEAAIEALDGAEWMGRDLKVNKARPREDRGPSGGG 89
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A4Q6DVS9_9SPHI (RNA-binding protein n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q6DVS9_9SPHI) HSP 1 Score: 54.7 bits (130), Expect = 1.440e-7 Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 16 KLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVK 210
+L +LF HG+V + D AT + GY F+ MA +A AIAALDG ++ ER++ VR+AD K
Sbjct: 17 ELMELFSVHGVVDTLTIVRDQATNVSKGYGFMHMADQAGADRAIAALDGFTIDERQLSVRIADDK 81
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A364WWW9_9SPHI (RNA-binding protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A364WWW9_9SPHI) HSP 1 Score: 54.7 bits (130), Expect = 1.470e-7 Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 16 KLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLAD 204
+L ++F +G V + TD TG++ GY F+ M+ A + AI ALDG+++ ERKI VR+AD
Sbjct: 17 ELTEIFRGYGSVNTVTIITDKVTGESQGYGFIEMSDRAGAEQAIKALDGATIDERKISVRIAD 79
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A2N9NJ30_9BACT (Putative RNA-binding protein RbpA n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2N9NJ30_9BACT) HSP 1 Score: 54.3 bits (129), Expect = 1.540e-7 Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 19 LADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVKAKK 219
L D F AHG V++A + D A+G+ G+ FVTM++ + AIAAL+G+ +G+R I V A KA++
Sbjct: 19 LRDAFAAHGTVLEANLMVDRASGRPRGFGFVTMSSPEEAQKAIAALNGTRLGDRDITVNEARTKAER 85
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A832BCU7_9BACT (RNA-binding protein n=1 Tax=Chthonomonadetes bacterium TaxID=2282152 RepID=A0A832BCU7_9BACT) HSP 1 Score: 53.9 bits (128), Expect = 1.700e-7 Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 10 AEKLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLADVKAKKPPRAN 234
A++L LF +G V+ + + TD TG+A G+AFV M + AAIAAL+GS G R++ V +A + + P R++
Sbjct: 16 ADQLEALFKPYGQVVDSIIVTDKVTGQARGFAFVEMKNDGEADAAIAALNGSEYGGRRLVVNVARERERPPRRSS 90
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A0F5AUJ7_9GAMM (RNA recognition motif containing protein n=15 Tax=Vibrionaceae TaxID=641 RepID=A0A0F5AUJ7_9GAMM) HSP 1 Score: 53.1 bits (126), Expect = 2.410e-7 Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 16 KLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEVRLAD 204
+L LF HG V + + D TG++ G+AFVTM E KAA+AAL+ SSV + KI V++A+
Sbjct: 16 QLRQLFSEHGDVTECNLVLDQETGESKGFAFVTMPDETQAKAAMAALNLSSVAKSKIRVKVAN 78
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Match: A0A3S5K1J4_9GAMM (RNA-binding protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3S5K1J4_9GAMM) HSP 1 Score: 54.3 bits (129), Expect = 2.490e-7 Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 4 IDAEKLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAALDGSSVGERKIEV 192
+ E L LF +HG V+ AQV D +G++ G+ FV M+++ +AAIAAL+G+S+G R + V
Sbjct: 14 VSNEDLEQLFASHGTVVSAQVIRDRDSGRSKGFGFVEMSSDQEAQAAIAALNGNSIGGRNLTV 76 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16412.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig16412.1.1 >prot_P-wetherbeei_contig16412.1.1 ID=prot_P-wetherbeei_contig16412.1.1|Name=mRNA_P-wetherbeei_contig16412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp GIDAEKLADLFDAHGIVIQAQVPTDPATGKAIGYAFVTMATEAHCKAAIAback to top mRNA from alignment at P-wetherbeei_contig16412:1..267+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig16412.1.1 ID=mRNA_P-wetherbeei_contig16412.1.1|Name=mRNA_P-wetherbeei_contig16412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig16412:1..267+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig16412:1..267+ >mRNA_P-wetherbeei_contig16412.1.1 ID=mRNA_P-wetherbeei_contig16412.1.1|Name=mRNA_P-wetherbeei_contig16412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig16412:1..267+ (Phaeothamnion wetherbeei SAG_119_79)back to top |