mRNA_P-wetherbeei_contig16402.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16402.1.1
Unique NamemRNA_P-wetherbeei_contig16402.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16402.1.1 vs. uniprot
Match: UPI0014830B0D (heavy metal sensor histidine kinase n=1 Tax=Polaromonas sp. AER18D-145 TaxID=1977060 RepID=UPI0014830B0D)

HSP 1 Score: 544 bits (1401), Expect = 3.460e-192
Identity = 291/305 (95.41%), Postives = 294/305 (96.39%), Query Frame = 1
Query:    1 PRARLLRALLYLMLTAGSLAMLLTFTLSLQATRHGLRPIGRLSRQAAAIAPSSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVKSFNADVAHELRTPLATLISGTQLALSANRPLTHLRATLESNLEELESLKSLVNDMMFLAHADHGAVVQDLVDTNLRPEVQKVCEFYDALLEDSRLKAVIEGRAAARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTEQGRIAEIAVANPGQPIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGRAFCESADGMTRVGIRIPQ 915
            PRARLLRALLYLMLTAGSLAMLLTFTLSLQATRHGLRPIGRLSRQAA IAP+SLALRLDISGIARELEELAQAFNGVLDRLESAYQQV+SFNADVAHELRTPLATLISGTQLALSANR   HLRATLESNLEELE LKSLVNDMMFLAHADHG VVQDLVDTNLRPEVQKVCEFYDALLEDS LKAVIEGRA ARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTE GRIAEIAVANPG PIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGG+AFCE ADGMTRVGIRIPQ
Sbjct:  144 PRARLLRALLYLMLTAGSLAMLLTFTLSLQATRHGLRPIGRLSRQAATIAPNSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVRSFNADVAHELRTPLATLISGTQLALSANRTQVHLRATLESNLEELEGLKSLVNDMMFLAHADHGTVVQDLVDTNLRPEVQKVCEFYDALLEDSGLKAVIEGRATARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTEHGRIAEIAVANPGPPIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGQAFCERADGMTRVGIRIPQ 448          
BLAST of mRNA_P-wetherbeei_contig16402.1.1 vs. uniprot
Match: UPI001E2E6248 (heavy metal sensor histidine kinase n=1 Tax=Bordetella petrii TaxID=94624 RepID=UPI001E2E6248)

HSP 1 Score: 276 bits (707), Expect = 6.470e-87
Identity = 151/280 (53.93%), Postives = 198/280 (70.71%), Query Frame = 1
Query:   70 TFTLSLQATRHGLRPIGRLSRQAAAIAPSSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVKSFNADVAHELRTPLATLISGTQLALSANRPLTHLRATLESNLEELESLKSLVNDMMFLAHADHGAVVQDLVDTNLRPEVQKVCEFYDALLEDSRLKAVIEGRAAARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTEQGRIAEIAVANPGQPIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGRAFCESADGMTRVGIRI 909
            T  LS  A R  L PI RLS  AA I P +LALRL   GI  EL +L +AFN +L R+++AYQQ++ FNADVAHELRTPLATLISGT++ALS+ RP+  LR  LESNLEEL+ LK+L+NDM+FLA AD G +  DL    +R E+++V E+Y+A L+++ +   I G A A+ +P L+RRAI+NL+SNAI+ T  G  I++   + G++ EI+V NPG PI A+   R+F RFY+AD AR    + HGLGLAIVSAIA+MHGG AF  S D  ++VG  I
Sbjct:  171 TGLLSAWAVRRSLAPIRRLSASAARIRPDNLALRLPEDGIDLELRDLVRAFNDMLARVQAAYQQMEGFNADVAHELRTPLATLISGTEIALSSPRPVAELRDALESNLEELQGLKALINDMLFLARADGGELAGDLRHVQVRQEIEQVVEYYEAALDEAGVALDIAGDAQAQANPRLLRRAIANLVSNAIEATPRGGRIQVRGAQAGQMIEISVINPGAPIAADALPRIFDRFYRADHARSSRSEGHGLGLAIVSAIARMHGGSAFARSGDSGSQVGFTI 450          
BLAST of mRNA_P-wetherbeei_contig16402.1.1 vs. uniprot
Match: A0A193FX20_9BORD (Sensor protein n=2 Tax=Bordetella bronchialis TaxID=463025 RepID=A0A193FX20_9BORD)

HSP 1 Score: 273 bits (697), Expect = 3.380e-85
Identity = 146/280 (52.14%), Postives = 192/280 (68.57%), Query Frame = 1
Query:   70 TFTLSLQATRHGLRPIGRLSRQAAAIAPSSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVKSFNADVAHELRTPLATLISGTQLALSANRPLTHLRATLESNLEELESLKSLVNDMMFLAHADHGAVVQDLVDTNLRPEVQKVCEFYDALLEDSRLKAVIEGRAAARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTEQGRIAEIAVANPGQPIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGRAFCESADGMTRVGIRI 909
            T  LS  A R GL P+  LSRQAA I P  L LRL + GI REL EL+ AFN  LDRL++AY+Q++ FNADVAHELRTPLATLI+GT++ L+++R    LR  LESNLEEL SLK+LVNDM+FLA AD G + +DL +  +  E++ V ++YDA L+++RL A + G A  R +P L+RRA+SNL++NAIK + P  +++++        EI VAN G  IP +   R+F RFY+ D AR    + HGLGLAIV AIA+MHGGR F  S  G T +G  +
Sbjct:  172 TALLSAWAVRRGLAPVQSLSRQAARIQPDRLDLRLPVGGIDRELRELSMAFNSTLDRLQAAYRQLEGFNADVAHELRTPLATLINGTEIVLASDRSNAELREVLESNLEELVSLKALVNDMLFLARADGGELARDLDEVQISSEIRHVVDYYDAALQEARLTAHVAGDARIRANPRLLRRAVSNLVANAIKASPPDTTLEIACHASPSEVEIRVANGGAAIPPQALPRIFDRFYRVDDARAGRAEGHGLGLAIVRAIARMHGGRVFALSEPGRTVIGFSL 451          
BLAST of mRNA_P-wetherbeei_contig16402.1.1 vs. uniprot
Match: A0A7W8HEY6_9BURK (Sensor protein n=2 Tax=Quisquiliibacterium transsilvanicum TaxID=1549638 RepID=A0A7W8HEY6_9BURK)

HSP 1 Score: 269 bits (687), Expect = 6.490e-84
Identity = 156/307 (50.81%), Postives = 197/307 (64.17%), Query Frame = 1
Query:    1 PRARLL---RALLYLMLTAGSLAMLLTFTLSLQATRHGLRPIGRLSRQAAAIAPSSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVKSFNADVAHELRTPLATLISGTQLALSANRPLTHLRATLESNLEELESLKSLVNDMMFLAHADHGAVVQDLVDTNLRPEVQKVCEFYDALLEDSRLKAVIEGRAAARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTEQGRIAEIAVANPGQPIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGRAFCESADGMTRVGIRIP 912
            PR RLL   R L++L+   G   +LL  TL+  AT  GL P  RLS QAA IAP+SL+LRLD   +  ELE+LA+ FN  LDR+E+AY++++SFNADVAHELRTPLATLI+  ++ L   R    +R TL   LEEL  LK++VNDM+FLA AD G    D     L  + +K  E+YDALL DS L   IEG A  RC+  L+RRA+SNL+SNAIK T+ G  I + L  +  +  + V NPG PIP   + R+F RFY+AD AR R G SHGLGLAIV AI +MH G  F  S      +G R+P
Sbjct:  155 PRLRLLENYRLLVWLVCAGG---VLLIVTLAFWATGRGLAPARRLSEQAARIAPASLSLRLDTQDVDAELEDLARGFNETLDRVETAYRKMESFNADVAHELRTPLATLINAAEVTLGDARSPETMRETLTDQLEELGQLKTMVNDMLFLARADQGDEAPDAAQVELSAQARKTVEYYDALLSDSGLNVSIEGEARVRCNAGLIRRALSNLVSNAIKQTSAGNLIVIRLRLENGLGIVEVINPGAPIPEVVRARIFDRFYRADTARSRLGMSHGLGLAIVKAIVEMHRGEVFARSGPEGNTIGFRLP 458          
BLAST of mRNA_P-wetherbeei_contig16402.1.1 vs. uniprot
Match: A0A0M7FH03_ACHAE (Sensor protein n=26 Tax=Alcaligenaceae TaxID=506 RepID=A0A0M7FH03_ACHAE)

HSP 1 Score: 268 bits (686), Expect = 9.430e-84
Identity = 150/280 (53.57%), Postives = 183/280 (65.36%), Query Frame = 1
Query:   70 TFTLSLQATRHGLRPIGRLSRQAAAIAPSSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVKSFNADVAHELRTPLATLISGTQLALSANRPLTHLRATLESNLEELESLKSLVNDMMFLAHADHGAVVQDLVDTNLRPEVQKVCEFYDALLEDSRLKAVIEGRAAARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTEQGRIAEIAVANPGQPIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGRAFCESADGMTRVGIRI 909
            T  LS  A R  L PI RLS+QAA I P +LA+RL   GI REL E    FNG+L R+++AYQQ++ FNADVAHELRTPLATLISG ++ LS+ R    LR  LESNLEELE LK+LVNDM+FLA AD G    DL + ++R EV +V E+Y+A L+++ +     G A    +P L+RRAI+NLLSNAI+ T  G  I L    +    EI V NPG PI AE   R+F RFY+ D AR R  D HGLGLAIV AIA+MHGG AF       T VG  +
Sbjct:  172 TLVLSAWAVRRSLSPIRRLSQQAARIQPDNLAVRLPEQGIDRELREFTHTFNGMLGRVQTAYQQMEGFNADVAHELRTPLATLISGAEVILSSPRSEQELREVLESNLEELEGLKALVNDMLFLARADGGEPAGDLQEVDVRREVARVAEYYEAALDEAGVSMTAHGAAILMANPRLLRRAIANLLSNAIRATPRGRGIDLYCITRQEEIEIRVRNPGAPIAAEALPRIFDRFYRGDDARSRRADGHGLGLAIVRAIARMHGGNAFARCGGQGTEVGFTL 451          
BLAST of mRNA_P-wetherbeei_contig16402.1.1 vs. uniprot
Match: A0A0G3BMQ9_9BURK (Sensor protein n=1 Tax=Schlegelella brevitalea TaxID=413882 RepID=A0A0G3BMQ9_9BURK)

HSP 1 Score: 265 bits (677), Expect = 2.560e-82
Identity = 146/304 (48.03%), Postives = 199/304 (65.46%), Query Frame = 1
Query:    1 PRARLLRALLYLMLTAGSLAMLLTFTLSLQATRHGLRPIGRLSRQAAAIAPSSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVKSFNADVAHELRTPLATLISGTQLALSANRPLTHLRATLESNLEELESLKSLVNDMMFLAHADHGAVVQDLVDTNLRPEVQKVCEFYDALLEDSRLKAVIEGRAAARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTEQGRIAEIAVANPGQPIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGRAFCESADGMTRVGIRIP 912
            P+A LLR     +     L + LT  L+    R  LRP+ RLS++AA+++P++LA RL       EL+ L  AFN  LDR+E+AY Q++ FNADVAHELRTPLAT+I+ T++AL   R    LR TL+ NLE L    +LVNDM+FLA AD G +   L  T+L  E Q+V E+++ LLE+ + +  +EG A A C+PAL+RRA+ NL+ NA ++TA G  I + ++E      +AV NPG PIPAE+  R+F RF++A+ AR RSG  HGLGLAIV AIA MHGGR   + A+G T +G+  P
Sbjct:  142 PQAALLRRYRATIAMVCGLGVALTVLLTAWIARRSLRPVHRLSQEAASLSPTALAARLSPVQT-HELQLLVDAFNRALDRVEAAYGQLEGFNADVAHELRTPLATMINATEVALRRERSADELRETLQLNLEVLREQSALVNDMLFLAQADRGRLADSLTPTDLHSEAQRVAEYFEPLLEELQQRVQVEGGATALCNPALVRRALVNLVGNATRYTAAGGCIHVDVSEHEGRVRLAVRNPGPPIPAESMPRLFERFFRANSARERSGSHHGLGLAIVRAIAVMHGGRTLAQCAEGWTEIGLEFP 444          
BLAST of mRNA_P-wetherbeei_contig16402.1.1 vs. uniprot
Match: A0A193GEF1_9BORD (Sensor protein n=1 Tax=Bordetella flabilis TaxID=463014 RepID=A0A193GEF1_9BORD)

HSP 1 Score: 265 bits (677), Expect = 3.360e-82
Identity = 142/273 (52.01%), Postives = 186/273 (68.13%), Query Frame = 1
Query:   91 ATRHGLRPIGRLSRQAAAIAPSSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVKSFNADVAHELRTPLATLISGTQLALSANRPLTHLRATLESNLEELESLKSLVNDMMFLAHADHGAVVQDLVDTNLRPEVQKVCEFYDALLEDSRLKAVIEGRAAARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTEQGRIAEIAVANPGQPIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGRAFCESADGMTRVGIRI 909
            A R  L P+ RLS QAA I P  L LRL + GI REL EL+ AFN  LDRL++AY+Q++ FNADVAHELRTPLATLI+GT++ L+ +R    LR  LESNLEEL  LK+L+NDM+FLA AD G + +DL + +++ E+  V E+YDA L+++RL     G A  R +P L+RRA+SNL++NAIK +  G +++++  E     EI V N G  IP +   R+F RFY+ D AR R  + HGLGLAIV AIA+MHGGR F  S  G T VG  +
Sbjct:  179 AVRRSLAPVHRLSHQAARIQPDHLDLRLPVQGIDRELRELSVAFNSTLDRLQAAYRQLEGFNADVAHELRTPLATLINGTEIILATDRSNGELREVLESNLEELVGLKALINDMLFLARADGGELARDLQEIHIQGEIHHVAEYYDAALQEARLTLRQAGDARVRANPRLLRRALSNLIANAIKASPAGATLEIACIESLTEVEIRVVNAGDAIPPQALPRIFDRFYRVDDARSRRAEGHGLGLAIVRAIAQMHGGRVFALSEAGRTIVGFTL 451          
BLAST of mRNA_P-wetherbeei_contig16402.1.1 vs. uniprot
Match: UPI00040E709D (heavy metal sensor histidine kinase n=2 Tax=Solimonas TaxID=413435 RepID=UPI00040E709D)

HSP 1 Score: 259 bits (661), Expect = 4.720e-80
Identity = 131/271 (48.34%), Postives = 183/271 (67.53%), Query Frame = 1
Query:   97 RHGLRPIGRLSRQAAAIAPSSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVKSFNADVAHELRTPLATLISGTQLALSANRPLTHLRATLESNLEELESLKSLVNDMMFLAHADHGAVVQDLVDTNLRPEVQKVCEFYDALLEDSRLKAVIEGRAAARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTEQGRIAEIAVANPGQPIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGRAFCESADGMTRVGIRI 909
            R GL P+ RLSR+A  ++P  L+ RL +  + REL ELA +FNG LDRLE AY Q+++FNADVAHELRTPL  LI  T++AL+  R    L   L+SNLEEL+ L++++NDM+FLA  D GA  +     +L  EV K  EF D +L+++ ++  +EG A A    +L RRAI+NLL NA++++APG  I++ +  + +  ++AVANPG+PIP E   R+F RFY+ DP+R   G +HGLGLAIV A+A MHGG  F  S DG+  +G  +
Sbjct:  182 RLGLAPLDRLSREAQHLSPQHLSQRLVLEPLPRELSELAASFNGALDRLERAYMQLQAFNADVAHELRTPLTNLIGQTEVALAKKRAPEELEDVLQSNLEELDRLRAIINDMLFLARVDQGAQAETRASVSLAEEVGKAVEFMDVVLDEAGMRVEVEGDARAGIETSLFRRAITNLLQNAVQYSAPGAEIRVLIEPREQAVQVAVANPGEPIPGEHLGRLFDRFYRVDPSRGSGGANHGLGLAIVKAVATMHGGTVFARSRDGINTIGFTL 452          
BLAST of mRNA_P-wetherbeei_contig16402.1.1 vs. uniprot
Match: A9IF18_BORPD (Sensor protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) TaxID=340100 RepID=A9IF18_BORPD)

HSP 1 Score: 259 bits (661), Expect = 5.270e-80
Identity = 139/280 (49.64%), Postives = 187/280 (66.79%), Query Frame = 1
Query:   70 TFTLSLQATRHGLRPIGRLSRQAAAIAPSSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVKSFNADVAHELRTPLATLISGTQLALSANRPLTHLRATLESNLEELESLKSLVNDMMFLAHADHGAVVQDLVDTNLRPEVQKVCEFYDALLEDSRLKAVIEGRAAARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTEQGRIAEIAVANPGQPIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGRAFCESADGMTRVGIRI 909
            T  LS  A R  L PI RLS +AA I P +L +RL   GI REL E    FN +L R+++AYQQ++ FNADVAHELRTPLATLI+GT++ LS+ R +  LR  + SNLEEL  LK+L+NDM+FLA AD G   +DL    +R E+ +V E+Y+A LE++ ++ V++G      +  L+RRAI+NL+SNAIK T  G++I     +  +  EI++ NPG PI  +   R+F RF++AD AR    D HGLGLAIVSAIA+MHGG AF +S +  + VG  I
Sbjct:  172 TVILSAWAVRRSLAPIRRLSARAAQIGPDNLKVRLPEGGIDRELREFTHTFNKMLARVQAAYQQMEGFNADVAHELRTPLATLINGTEVTLSSERSIEELRDVMASNLEELHGLKALINDMLFLARADGGETARDLRPVMVRDEIDQVVEYYEAALEEAGVRLVVDGNVQVHANSRLLRRAIANLVSNAIKATPNGQTILARCAQDDQFVEISLRNPGTPIHRDALPRIFDRFFRADDARSGRADGHGLGLAIVSAIARMHGGAAFAKSDNHGSEVGFTI 451          
BLAST of mRNA_P-wetherbeei_contig16402.1.1 vs. uniprot
Match: UPI001A96B327 (Heavy metal sensor histidine kinase n=2 Tax=Bordetella petrii TaxID=94624 RepID=UPI001A96B327)

HSP 1 Score: 259 bits (661), Expect = 5.270e-80
Identity = 148/280 (52.86%), Postives = 179/280 (63.93%), Query Frame = 1
Query:   70 TFTLSLQATRHGLRPIGRLSRQAAAIAPSSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVKSFNADVAHELRTPLATLISGTQLALSANRPLTHLRATLESNLEELESLKSLVNDMMFLAHADHGAVVQDLVDTNLRPEVQKVCEFYDALLEDSRLKAVIEGRAAARCSPALMRRAISNLLSNAIKFTAPGESIKLSLTEQGRIAEIAVANPGQPIPAETQERMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGRAFCESADGMTRVGIRI 909
            T  LS  A R  L PI RLS QAA I P SLALRL   GI REL E    FN  LDRL++AYQQ++ FNADVAHELRTPLATLI+GT++ LS+ R    L+  LESNLEEL+ LK+LVNDM+FLA AD G + QDL +  LR     V E+YDA L ++ L   I G      +P L+RRA+SNLLSNAIK +  G+SI +  + Q    E  V N G  I  +   R+F RF++AD AR    + HGLGLAIV AIA+MHGG AF  S    T VG  +
Sbjct:  172 TVVLSAWAVRRSLAPIRRLSGQAARIQPGSLALRLPEHGIDRELCEFTHTFNATLDRLQAAYQQMEGFNADVAHELRTPLATLINGTEVTLSSARSADELKELLESNLEELQGLKTLVNDMLFLARADGGELAQDLQEVQLRGVAAHVAEYYDAALAEAGLSVEIHGGGTVLANPRLLRRALSNLLSNAIKASPRGQSIAIHCSAQNGGGEFRVRNTGAAIEPQALPRIFDRFFRADSARSSRTEGHGLGLAIVDAIARMHGGAAFAASDGSGTEVGFSL 451          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16402.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0014830B0D3.460e-19295.41heavy metal sensor histidine kinase n=1 Tax=Polaro... [more]
UPI001E2E62486.470e-8753.93heavy metal sensor histidine kinase n=1 Tax=Bordet... [more]
A0A193FX20_9BORD3.380e-8552.14Sensor protein n=2 Tax=Bordetella bronchialis TaxI... [more]
A0A7W8HEY6_9BURK6.490e-8450.81Sensor protein n=2 Tax=Quisquiliibacterium transsi... [more]
A0A0M7FH03_ACHAE9.430e-8453.57Sensor protein n=26 Tax=Alcaligenaceae TaxID=506 R... [more]
A0A0G3BMQ9_9BURK2.560e-8248.03Sensor protein n=1 Tax=Schlegelella brevitalea Tax... [more]
A0A193GEF1_9BORD3.360e-8252.01Sensor protein n=1 Tax=Bordetella flabilis TaxID=4... [more]
UPI00040E709D4.720e-8048.34heavy metal sensor histidine kinase n=2 Tax=Solimo... [more]
A9IF18_BORPD5.270e-8049.64Sensor protein n=1 Tax=Bordetella petrii (strain A... [more]
UPI001A96B3275.270e-8052.86Heavy metal sensor histidine kinase n=2 Tax=Bordet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16402contigP-wetherbeei_contig16402:3..920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog762376.AXYL_05743
PFAMsHATPase_c,HisKA
Model size918
Max annot lvl28216|Betaproteobacteria
KEGG koko:K07644
KEGG Pathwayko02020,map02020
KEGG ModuleM00452,M00745
Hectar predicted targeting categorychloroplast
Exons1
Evalue3.88e-85
EggNOG OGsCOG5000@1|root,COG5002@1|root,COG5000@2|Bacteria,COG5002@2|Bacteria,1QTV1@1224|Proteobacteria,2WGQF@28216|Betaproteobacteria
EC2.7.13.3
DescriptionMember of a two-component regulatory system
Cds size918
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01504,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.1463375-CDS-P-wetherbeei_contig16402:2..9201683186086.1463375-CDS-P-wetherbeei_contig16402:2..920Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16402 3..920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16402.1.1prot_P-wetherbeei_contig16402.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16402 3..920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16402.1.1

>prot_P-wetherbeei_contig16402.1.1 ID=prot_P-wetherbeei_contig16402.1.1|Name=mRNA_P-wetherbeei_contig16402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=306bp
PRARLLRALLYLMLTAGSLAMLLTFTLSLQATRHGLRPIGRLSRQAAAIA
PSSLALRLDISGIARELEELAQAFNGVLDRLESAYQQVKSFNADVAHELR
TPLATLISGTQLALSANRPLTHLRATLESNLEELESLKSLVNDMMFLAHA
DHGAVVQDLVDTNLRPEVQKVCEFYDALLEDSRLKAVIEGRAAARCSPAL
MRRAISNLLSNAIKFTAPGESIKLSLTEQGRIAEIAVANPGQPIPAETQE
RMFSRFYQADPARVRSGDSHGLGLAIVSAIAKMHGGRAFCESADGMTRVG
IRIPQ*
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mRNA from alignment at P-wetherbeei_contig16402:3..920+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16402.1.1 ID=mRNA_P-wetherbeei_contig16402.1.1|Name=mRNA_P-wetherbeei_contig16402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig16402:3..920+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCGCGCCAGACTGCTGCGTGCGCTGCTCTACCTGATGTTGACGGCCGG CTCACTCGCCATGCTGCTTACTTTTACGCTGAGCTTGCAGGCGACCCGGC ACGGATTGCGGCCCATAGGCCGCCTGTCCCGGCAGGCTGCAGCGATCGCA CCGAGCTCTCTCGCACTGCGCTTGGATATCAGTGGAATCGCTCGTGAGCT GGAGGAACTGGCTCAAGCATTCAACGGCGTCCTCGACCGGCTGGAATCGG CCTACCAGCAAGTGAAATCATTTAACGCAGATGTGGCGCATGAGTTGCGC ACGCCCTTGGCTACCCTGATCAGCGGAACCCAGTTGGCGCTGTCGGCAAA TCGGCCGCTGACGCATCTGCGAGCGACTCTTGAATCCAATCTGGAGGAGC TGGAAAGCCTCAAATCGCTAGTGAACGACATGATGTTTCTGGCGCACGCC GATCATGGCGCTGTTGTTCAGGATCTGGTCGATACCAACCTGAGGCCCGA GGTTCAGAAGGTGTGCGAGTTTTATGACGCGCTCCTTGAAGACTCCAGGT TGAAGGCTGTCATTGAAGGTCGAGCTGCCGCACGCTGCTCGCCCGCGCTG ATGCGCCGGGCGATTTCGAACCTGTTATCCAATGCGATCAAGTTCACGGC ACCGGGCGAATCCATCAAGCTGTCATTGACCGAGCAGGGCCGCATCGCTG AGATAGCGGTTGCCAATCCGGGCCAACCCATTCCGGCCGAGACGCAGGAA AGGATGTTTTCCCGTTTCTACCAAGCCGATCCGGCGCGCGTTCGCTCCGG CGACAGTCATGGCCTGGGTCTTGCCATCGTCAGCGCTATCGCCAAGATGC ACGGAGGTCGGGCTTTCTGTGAAAGCGCTGACGGTATGACACGCGTGGGC ATTCGCATCCCGCAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16402:3..920+

>mRNA_P-wetherbeei_contig16402.1.1 ID=mRNA_P-wetherbeei_contig16402.1.1|Name=mRNA_P-wetherbeei_contig16402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig16402:3..920+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCGCGCCAGACTGCTGCGTGCGCTGCTCTACCTGATGTTGACGGCCGG
CTCACTCGCCATGCTGCTTACTTTTACGCTGAGCTTGCAGGCGACCCGGC
ACGGATTGCGGCCCATAGGCCGCCTGTCCCGGCAGGCTGCAGCGATCGCA
CCGAGCTCTCTCGCACTGCGCTTGGATATCAGTGGAATCGCTCGTGAGCT
GGAGGAACTGGCTCAAGCATTCAACGGCGTCCTCGACCGGCTGGAATCGG
CCTACCAGCAAGTGAAATCATTTAACGCAGATGTGGCGCATGAGTTGCGC
ACGCCCTTGGCTACCCTGATCAGCGGAACCCAGTTGGCGCTGTCGGCAAA
TCGGCCGCTGACGCATCTGCGAGCGACTCTTGAATCCAATCTGGAGGAGC
TGGAAAGCCTCAAATCGCTAGTGAACGACATGATGTTTCTGGCGCACGCC
GATCATGGCGCTGTTGTTCAGGATCTGGTCGATACCAACCTGAGGCCCGA
GGTTCAGAAGGTGTGCGAGTTTTATGACGCGCTCCTTGAAGACTCCAGGT
TGAAGGCTGTCATTGAAGGTCGAGCTGCCGCACGCTGCTCGCCCGCGCTG
ATGCGCCGGGCGATTTCGAACCTGTTATCCAATGCGATCAAGTTCACGGC
ACCGGGCGAATCCATCAAGCTGTCATTGACCGAGCAGGGCCGCATCGCTG
AGATAGCGGTTGCCAATCCGGGCCAACCCATTCCGGCCGAGACGCAGGAA
AGGATGTTTTCCCGTTTCTACCAAGCCGATCCGGCGCGCGTTCGCTCCGG
CGACAGTCATGGCCTGGGTCTTGCCATCGTCAGCGCTATCGCCAAGATGC
ACGGAGGTCGGGCTTTCTGTGAAAGCGCTGACGGTATGACACGCGTGGGC
ATTCGCATCCCGCAGTAG
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