mRNA_P-wetherbeei_contig1640.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1640.1.1
Unique NamemRNA_P-wetherbeei_contig1640.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1640.1.1 vs. uniprot
Match: A0A6V1NRV6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRV6_HETAK)

HSP 1 Score: 141 bits (355), Expect = 2.350e-40
Identity = 75/110 (68.18%), Postives = 85/110 (77.27%), Query Frame = 1
Query:    4 NRFRPAGGFSPPRGGAVTGGRGRPGARAKQGLDEEAMEEVKEAFNLFDTEGKGSIDIRELKAAFRALGFQVKKAEIRQMLMDISKEVTPTIAFNEFVEMVTPKILARDPK 333
            +RFR AG FSPPR         R G + KQGLD+EAMEE+KEAFNLFDTEGKG ID+RELKAAFRALGFQVKKAE+R ML +I KE   T+ FNEFVE VTPK+L RD +
Sbjct:    4 SRFRSAGQFSPPR--------ARRGVKPKQGLDDEAMEEIKEAFNLFDTEGKGIIDVRELKAAFRALGFQVKKAELRTMLQEIDKESAATVEFNEFVEFVTPKMLNRDTR 105          
BLAST of mRNA_P-wetherbeei_contig1640.1.1 vs. uniprot
Match: A0A482SIZ7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIZ7_9ARCH)

HSP 1 Score: 137 bits (345), Expect = 6.280e-39
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 1
Query:    1 MNRFRPAGGFSPPRGGAVTGGRGRPGARAKQGLDEEAMEEVKEAFNLFDTEGKGSIDIRELKAAFRALGFQVKKAEIRQMLMDISKEVTP-TIAFNEFVEMVTPKILARDPK 333
            ++RF+ + G SPPR       RGR  A+ K GLD+EAMEE+KEAFNLFDTEGKG+ID+RELKAAFRALGFQVKKAEIRQ+ +D+ K+++  T+ F+EFVEMVTP++L RD +
Sbjct:    7 LSRFKASAGLSPPR-------RGRAAAKPKAGLDDEAMEEIKEAFNLFDTEGKGNIDVRELKAAFRALGFQVKKAEIRQLFIDMDKDLSSATVTFDEFVEMVTPRMLNRDSR 111          
BLAST of mRNA_P-wetherbeei_contig1640.1.1 vs. uniprot
Match: D8LK03_ECTSI (Putative: similar to centrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK03_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.460e-38
Identity = 71/94 (75.53%), Postives = 81/94 (86.17%), Query Frame = 1
Query:   61 GRGRPGA---RAKQGLDEEAMEEVKEAFNLFDTEGKGSIDIRELKAAFRALGFQVKKAEIRQMLMDISKEVTPTIAFNEFVEMVTPKILARDPK 333
            GRGR GA   R KQ LDEE+MEE+KEAF+LFDTEGKG+IDIRELKAAFRALGFQVKK EIR ML D+ KE   +++FN+FVEMVTPK+LARDPK
Sbjct:   10 GRGRGGAAGGRGKQTLDEESMEEIKEAFSLFDTEGKGAIDIRELKAAFRALGFQVKKQEIRGMLTDVDKEGAASVSFNDFVEMVTPKVLARDPK 103          
BLAST of mRNA_P-wetherbeei_contig1640.1.1 vs. uniprot
Match: A0A6H5K0C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C1_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.340e-37
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 MNRFRPAGGFSPPRGGAVTGGRGRPGARAKQGLDEEAMEEVKEAFNLFDTEGKGSIDIRELKAAFRALGFQVKKAEIRQMLMDISKEVTPTIAFNEFVEMVTPKILARDPK 333
            ++RFR +GG   P         G  G R KQ LDEE+MEE+KEAF+LFDTEGKG+IDIRELKAAFRALGFQVKK EIR ML D+ KE   +++FN+FVEMVTPK+LARDPK
Sbjct:    4 VSRFRNSGGGPSPXX-XXXXXXGAAGGRGKQTLDEESMEEIKEAFSLFDTEGKGAIDIRELKAAFRALGFQVKKQEIRGMLTDVDKEGAASVSFNDFVEMVTPKVLARDPK 113          
BLAST of mRNA_P-wetherbeei_contig1640.1.1 vs. uniprot
Match: A0A812WEV1_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WEV1_SYMMI)

HSP 1 Score: 127 bits (318), Expect = 9.690e-35
Identity = 68/106 (64.15%), Postives = 86/106 (81.13%), Query Frame = 1
Query:   19 AGGFSPPRGGAVTGGRGRPGARAKQGLDEEAMEEVKEAFNLFDTEGKGSIDIRELKAAFRALGFQVKKAEIRQMLMDISKEV-TPTIAFNEFVEMVTPKILARDPK 333
            A G SPP+       RGRP ++ KQGLD+E+MEE++EAFNLFDTEG+  ID+RELKAAFRALGFQVKKAEIRQM +D+ K++ + TI F+EFVEMVTP++L RD +
Sbjct:    9 AAGLSPPK-------RGRP-SKVKQGLDDESMEEIREAFNLFDTEGRAVIDVRELKAAFRALGFQVKKAEIRQMFVDMDKDLGSATITFDEFVEMVTPRMLGRDSR 106          
BLAST of mRNA_P-wetherbeei_contig1640.1.1 vs. uniprot
Match: F0YQ62_AURAN (Uncharacterized protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YQ62_AURAN)

HSP 1 Score: 122 bits (307), Expect = 5.560e-33
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 1
Query:   67 GRPG------ARAKQGLDEEAMEEVKEAFNLFDTEGKGSIDIRELKAAFRALGFQVKKAEIRQMLMDISKEVTPTIAFNEFVEMVTPKILARDPK 333
            GRPG      A  + G+ EE MEE++EAFNLFDTEGKG IDI+ELKAAFRALGFQVKKAEIR+M+ D+ KE +PT+ F+EFVEM TPK+ +RD +
Sbjct:   18 GRPGGGRASRAPKRAGVSEEEMEEIREAFNLFDTEGKGVIDIKELKAAFRALGFQVKKAEIRRMMQDVDKESSPTVLFDEFVEMATPKMQSRDTR 112          
BLAST of mRNA_P-wetherbeei_contig1640.1.1 vs. uniprot
Match: A0A7S2BLZ9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLZ9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 7.870e-33
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = 1
Query:   64 RGRPGARAKQGLDEEAMEEVKEAFNLFDTEGKGSIDIRELKAAFRALGFQVKKAEIRQMLMDISKEVTPTIAFNEFVEMVTPKILARDPK 333
            RGRPG+  K GL EE MEEVKEAF LFDTE +G+IDI+ELKAAFRALGF VKKAEIR+M+ +I KE +  + + EFVEM TPK+ ARD K
Sbjct:   23 RGRPGSAKKVGLTEEEMEEVKEAFQLFDTENRGTIDIKELKAAFRALGFMVKKAEIREMMTNIDKETSAVVLYEEFVEMATPKVQARDTK 112          
BLAST of mRNA_P-wetherbeei_contig1640.1.1 vs. uniprot
Match: K8YSR4_NANGC (Caltractin (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSR4_NANGC)

HSP 1 Score: 116 bits (290), Expect = 8.070e-31
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    4 NRFRPAGGF-SPPRGGAVTGGRGRPGARAKQGLDEEAMEEVKEAFNLFDTEGKGSIDIRELKAAFRALGFQVKKAEIRQMLMDISKEVTPTIAFNEFVEMVTPKILARDPK 333
            +RFR   G  SPP        R +PGA+ K GLDEE +EE++EAFNLFD++GKG+ID+RELKAAFRALGFQVKKAEIR  L  I KE+  T+ ++EF++M  PK+  RD +
Sbjct:    8 SRFRQGAGLGSPP------SRRPKPGAKGK-GLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDER 111          
BLAST of mRNA_P-wetherbeei_contig1640.1.1 vs. uniprot
Match: A0A7S3JY70_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JY70_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.320e-30
Identity = 56/88 (63.64%), Postives = 70/88 (79.55%), Query Frame = 1
Query:   70 RPGARAKQGLDEEAMEEVKEAFNLFDTEGKGSIDIRELKAAFRALGFQVKKAEIRQMLMDISKEVTPTIAFNEFVEMVTPKILARDPK 333
            R G   + GL++E MEE++EAFNLFDTE  G IDI+ELKAAFRALGFQVKKAE+R+ML DI KE +  I F++FVEM TPK+ +RD +
Sbjct:   14 RKGVGKRPGLNDEEMEEIREAFNLFDTEASGCIDIKELKAAFRALGFQVKKAELRRMLQDIDKETSANITFDDFVEMATPKMQSRDTR 101          
BLAST of mRNA_P-wetherbeei_contig1640.1.1 vs. uniprot
Match: A0A7S2WQU2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQU2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.920e-29
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   88 KQGLDEEAMEEVKEAFNLFDTEGKGSIDIRELKAAFRALGFQVKKAEIRQMLMDISKEVTPTIAFNEFVEMVTPKILARDPK 333
            K GL EE MEEVKEAF LFDTE KGSID++ELKAAFRALGFQVKKAEIRQM+ DI K     + ++EFVEMVTPK+ +RD +
Sbjct:   37 KVGLSEEEMEEVKEAFQLFDTEQKGSIDVKELKAAFRALGFQVKKAEIRQMMTDIDKLDAAVVLYDEFVEMVTPKMQSRDTR 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1640.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1NRV6_HETAK2.350e-4068.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482SIZ7_9ARCH6.280e-3963.39Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D8LK03_ECTSI1.460e-3875.53Putative: similar to centrin n=1 Tax=Ectocarpus si... [more]
A0A6H5K0C1_9PHAE1.340e-3765.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812WEV1_SYMMI9.690e-3564.15Calmodulin n=1 Tax=Symbiodinium microadriaticum Ta... [more]
F0YQ62_AURAN5.560e-3365.26Uncharacterized protein n=2 Tax=Pelagomonadales Ta... [more]
A0A7S2BLZ9_9STRA7.870e-3367.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K8YSR4_NANGC8.070e-3156.76Caltractin (Fragment) n=3 Tax=Monodopsidaceae TaxI... [more]
A0A7S3JY70_9STRA4.320e-3063.64Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2WQU2_9STRA1.920e-2970.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1640contigP-wetherbeei_contig1640:268..751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LK03
PFAMsEF-hand_1,EF-hand_5,EF-hand_7,EF-hand_8
Model size345
Max annot lvl2759|Eukaryota
KEGG koko:K16465
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.39e-39
EggNOG OGsCOG5126@1|root,KOG0028@2759|Eukaryota
Ec32 ortholog descriptionputative: similar to centrin
Ec32 orthologEc-06_007660.1
Descriptioncalcium ion binding
Cds size345
COG categoryDTZ
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186086.113076-CDS-P-wetherbeei_contig1640:267..3991683186086.113076-CDS-P-wetherbeei_contig1640:267..399Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1640 268..399 -
1683186086.1223736-CDS-P-wetherbeei_contig1640:538..7511683186086.1223736-CDS-P-wetherbeei_contig1640:538..751Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1640 539..751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1640.1.1prot_P-wetherbeei_contig1640.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1640 268..751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1640.1.1

>prot_P-wetherbeei_contig1640.1.1 ID=prot_P-wetherbeei_contig1640.1.1|Name=mRNA_P-wetherbeei_contig1640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MNRFRPAGGFSPPRGGAVTGGRGRPGARAKQGLDEEAMEEVKEAFNLFDT
EGKGSIDIRELKAAFRALGFQVKKAEIRQMLMDISKEVTPTIAFNEFVEM
VTPKILARDPKVRH*
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mRNA from alignment at P-wetherbeei_contig1640:268..751-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1640.1.1 ID=mRNA_P-wetherbeei_contig1640.1.1|Name=mRNA_P-wetherbeei_contig1640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=484bp|location=Sequence derived from alignment at P-wetherbeei_contig1640:268..751- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCGCTTCAGACCGGCCGGAGGCTTCAGTCCTCCCCGCGGCGGGGC GGTCACGGGCGGGCGGGGGCGACCGGGCGCTCGCGCCAAGCAGGGCTTGG ATGAGGAAGCGATGGAGGAGGTGAAGGAGGCCTTCAACCTCTTCGACACG GAAGGCAAGGGCAGCATCGACATCCGCGAGCTGAAGGCCGCCTTCCGAGC GCTGGGCTTTCAGGTGTGTTCAGTACTTTGCGGGCAGTTTGAATTTTGGG CTTCGGTGATTCTTGACAGCACAGCAATGTGCATGGCACGCAAGAGACCC GCCTGCTCTTTCAAACCTCTCTCATTGCCCGCTCTTTTTGTATATTTCGC AGGTGAAAAAGGCAGAAATCCGGCAAATGCTGATGGACATCAGCAAGGAG GTGACGCCGACCATCGCCTTCAACGAGTTTGTGGAGATGGTCACGCCGAA GATCCTGGCGCGAGACCCGAAGGTGCGGCATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1640:268..751-

>mRNA_P-wetherbeei_contig1640.1.1 ID=mRNA_P-wetherbeei_contig1640.1.1|Name=mRNA_P-wetherbeei_contig1640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig1640:268..751- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCGCTTCAGACCGGCCGGAGGCTTCAGTCCTCCCCGCGGCGGGGC
GGTCACGGGCGGGCGGGGGCGACCGGGCGCTCGCGCCAAGCAGGGCTTGG
ATGAGGAAGCGATGGAGGAGGTGAAGGAGGCCTTCAACCTCTTCGACACG
GAAGGCAAGGGCAGCATCGACATCCGCGAGCTGAAGGCCGCCTTCCGAGC
GCTGGGCTTTCAGGTGAAAAAGGCAGAAATCCGGCAAATGCTGATGGACA
TCAGCAAGGAGGTGACGCCGACCATCGCCTTCAACGAGTTTGTGGAGATG
GTCACGCCGAAGATCCTGGCGCGAGACCCGAAGGTGCGGCATTGA
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