mRNA_P-wetherbeei_contig164.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig164.8.1
Unique NamemRNA_P-wetherbeei_contig164.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig164.8.1 vs. uniprot
Match: D7FQ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 1.070e-66
Identity = 95/121 (78.51%), Postives = 107/121 (88.43%), Query Frame = 2
Query:  197 AATGYDPKRSKINDDKLAEFIRSPITGDITEVPGIADGARTKLAAGEGDDKVTNTYQLIGKFLALKGPDSKDHKVDSVEHCDKFWYWLQSKEVNSHRSGIVNAIAEKVNTWMPGTYDADAF 559
            A  GYDPKRSK++DDKLAEFIRS +TGD+TEVPGIA      LA GEGDDKVTNTYQLIGKFLAL+GPD  DH+VDSVEHCDKFWYWLQ+K +NS+RSGIVNAIAEKVNTW+PG YDAD++
Sbjct:    2 AEVGYDPKRSKVSDDKLAEFIRSAVTGDLTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSY 122          
BLAST of mRNA_P-wetherbeei_contig164.8.1 vs. uniprot
Match: A0A835Z4N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA)

HSP 1 Score: 184 bits (467), Expect = 8.370e-56
Identity = 79/120 (65.83%), Postives = 97/120 (80.83%), Query Frame = 2
Query:  206 GYDPKRSKINDDKLAEFIRSPITGDITEVPGIADGARTKLAAGEGDDKVTNTYQLIGKFLALKGPDSKDHKVDSVEHCDKFWYWLQSKEVNSHRSGIVNAIAEKVNTWMPGTYDADAFES 565
            GYDPKRSK+ D+KLAEFIR PITG++TEVPGI   A  KLAAGEG +KV NTYQLIGKFL+LKG D     + ++EHCD+FWYWL+   ++S+RSGIVNAIAEK NTW+PG YD D +++
Sbjct:    6 GYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQYDA 125          
BLAST of mRNA_P-wetherbeei_contig164.8.1 vs. uniprot
Match: K0QZN8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZN8_THAOC)

HSP 1 Score: 181 bits (458), Expect = 2.190e-54
Identity = 78/122 (63.93%), Postives = 99/122 (81.15%), Query Frame = 2
Query:  197 AATGYDPKRSKINDDKLAEFIRSPITGDITEVPGIADGARTKLAAGEGDDKVTNTYQLIGKFLALKGPDSKDHKVDSVEHCDKFWYWLQSKEVNSHRSGIVNAIAEKVNTWMPGTYDADAFE 562
            +A GYDPKRS+++DD L +FIR+ + GDITEVPGI   A  KLA GE D+ +TNTYQLIGKFL LKGPD+ D+KV+S+EHC+KFWYWLQ K++++HRS IV AIA KVN  +PG YDAD ++
Sbjct:    2 SAQGYDPKRSRVSDDSLMDFIRAQVQGDITEVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDNKVESMEHCEKFWYWLQDKQISAHRSAIVKAIAMKVNGLLPGVYDADLYD 123          
BLAST of mRNA_P-wetherbeei_contig164.8.1 vs. uniprot
Match: A0A7S2V4V0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V0_9STRA)

HSP 1 Score: 177 bits (448), Expect = 8.340e-53
Identity = 77/121 (63.64%), Postives = 100/121 (82.64%), Query Frame = 2
Query:  200 ATGYDPKRSKINDDKLAEFIRSPITGDITEVPGIADGARTKLAAGEGDDKVTNTYQLIGKFLALKGPDSKDHKVDSVEHCDKFWYWLQSKEVNSHRSGIVNAIAEKVNTWMPGTYDADAFE 562
            A GYDPKRS I++D LA F+R+PITGDIT+VPGI   A   LA+ + D+ +TN++QLIGKFL +KGPD+++ +VD V HC+KFWY+L+SK VNSHRSGIV+AIAEK+NT +PG YD+D FE
Sbjct:    2 AEGYDPKRSSISEDALATFLRNPITGDITQVPGIGKAAAAALASADDDEPITNSFQLIGKFLLMKGPDTEEGEVDCVMHCNKFWYYLKSKGVNSHRSGIVHAIAEKINTMIPGIYDSDVFE 122          
BLAST of mRNA_P-wetherbeei_contig164.8.1 vs. uniprot
Match: A0A7S1ZJR7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJR7_TRICV)

HSP 1 Score: 174 bits (440), Expect = 2.250e-51
Identity = 77/126 (61.11%), Postives = 95/126 (75.40%), Query Frame = 2
Query:  188 RPQAATGYDPKRSKINDDKLAEFIRSPITGDITEVPGIADGARTKLAAGEGDDKVTNTYQLIGKFLALKGPDSKDHKVDSVEHCDKFWYWLQSKEVNSHRSGIVNAIAEKVNTWMPGTYDADAFES 565
            R  A TGYDP+RS++++D L +F+R  ITG+ITEVPGI   A  +LA G+ DD+VTNT+QLIGKF+ LKGPD  +HKV   EH  KFW+WL  KE+ SHRS IV AIAEK+N  MPG YDADA+ S
Sbjct:   20 RKMAETGYDPRRSRVSEDTLNDFLRGKITGEITEVPGIGPAAAKRLAEGDDDDRVTNTWQLIGKFMMLKGPDDDEHKVGPGEHMQKFWHWLAEKEIKSHRSAIVKAIAEKMNQMMPGIYDADAYGS 145          
BLAST of mRNA_P-wetherbeei_contig164.8.1 vs. uniprot
Match: A0A7S2R0A3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0A3_9STRA)

HSP 1 Score: 165 bits (417), Expect = 4.140e-48
Identity = 71/121 (58.68%), Postives = 91/121 (75.21%), Query Frame = 2
Query:  200 ATGYDPKRSKINDDKLAEFIRSPITGDITEVPGIADGARTKLAAGEGD-DKVTNTYQLIGKFLALKGPDSKDHKVDSVEHCDKFWYWLQSKEVNSHRSGIVNAIAEKVNTWMPGTYDADAF 559
            A GYDP RSK++D  + +F+RS ITGD+TEVPGI   A+  LA G+ + D++TNT+QLIGKFL LKGPD  D K+D +EH +KFWYWL+ K + SHRS IV AI EK+NT +PG YDA  +
Sbjct:    4 ALGYDPSRSKVSDSTMTDFLRSQITGDVTEVPGIGPAAKRALAGGDDESDRITNTFQLIGKFLMLKGPDEDDMKIDCMEHMEKFWYWLKQKGIKSHRSAIVKAIGEKINTMIPGIYDASIY 124          
BLAST of mRNA_P-wetherbeei_contig164.8.1 vs. uniprot
Match: A0A2D4C4D0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4D0_PYTIN)

HSP 1 Score: 160 bits (404), Expect = 2.680e-46
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 2
Query:  206 GYDPKRSKINDDKLAEFIRSPITGDITEVPGIADGARTKLAAGEGDDKVTNTYQLIGKFLALKGPDSK--DHKVDSVEHCDKFWYWLQSKEVNSHRSGIVNAIAEKVNTWMPGTYDADAFE 562
            GYDP++S++ +D LA+F+R+P+TGD+TEVPGI   A  KLAAGE  D+V NT+QLIGKFL LK    K  D  +D  EHCD FWYWL+SK + ++RSGIV AIAEKVNT +PG YDA  F+
Sbjct:    4 GYDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVGKLAAGEEGDRVENTFQLIGKFLMLKQSTDKNEDGLIDCAEHCDAFWYWLKSKGIQAYRSGIVMAIAEKVNTMLPGIYDAAEFQ 124          
BLAST of mRNA_P-wetherbeei_contig164.8.1 vs. uniprot
Match: A0A6U3Z2B1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Z2B1_9STRA)

HSP 1 Score: 159 bits (403), Expect = 5.030e-46
Identity = 74/125 (59.20%), Postives = 95/125 (76.00%), Query Frame = 2
Query:  200 ATGYDPKRSKINDDKLAEFIRSPITGDITEVPGIADGARTKLAA-GEGD---DKVTNTYQLIGKFLALKGPDSKDHKVDSVEHCDKFWYWLQSKEVNSHRSGIVNAIAEKVNTWMPGTYDADAFE 562
            A GYDP+RSK++DD  A F R  ++G++T+VPGI   A  KL   G+G+   D+VTNTYQLIGKFL LKGPD   +KV+SVEH +KFW++L+ K ++SHRSGIV AIAEKVNT +PG YDA  +E
Sbjct:    2 AEGYDPRRSKVSDDTFASFQRDALSGELTDVPGIGPAAAKKLGQIGDGETEFDRVTNTYQLIGKFLMLKGPDEDGNKVESVEHMEKFWWYLKQKGISSHRSGIVRAIAEKVNTMLPGIYDASEYE 126          
BLAST of mRNA_P-wetherbeei_contig164.8.1 vs. uniprot
Match: K3WZ09_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WZ09_GLOUD)

HSP 1 Score: 159 bits (402), Expect = 5.540e-46
Identity = 72/124 (58.06%), Postives = 95/124 (76.61%), Query Frame = 2
Query:  197 AATGYDPKRSKINDDKLAEFIRSPITGDITEVPGIADGARTKLAAGEGDDKVTNTYQLIGKFLALK--GPDSKDHKVDSVEHCDKFWYWLQSKEVNSHRSGIVNAIAEKVNTWMPGTYDADAFE 562
            +A GYDP++S++ +D LA+F+R+P+TGD+TEVPGI   A TKLAAGE  D+V NT+QLIGKFL LK    ++ D  +D   HCD FW+WL+SK + ++RSGIV AIAEKVNT +PG YDA  F+
Sbjct:    2 SADGYDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGPAAVTKLAAGEDGDQVGNTFQLIGKFLLLKKNSDENDDGLLDCAAHCDAFWFWLKSKGITAYRSGIVMAIAEKVNTMLPGIYDAAEFQ 125          
BLAST of mRNA_P-wetherbeei_contig164.8.1 vs. uniprot
Match: F0WQ47_9STRA (Uncharacterized protein AlNc14C194G8527 n=2 Tax=Albugo TaxID=65356 RepID=F0WQ47_9STRA)

HSP 1 Score: 159 bits (401), Expect = 7.590e-46
Identity = 70/120 (58.33%), Postives = 95/120 (79.17%), Query Frame = 2
Query:  206 GYDPKRSKINDDKLAEFIRSPITGDITEVPGIADGARTKLAAGEGDDKVTNTYQLIGKFLALKGPDSKDHK--VDSVEHCDKFWYWLQSKEVNSHRSGIVNAIAEKVNTWMPGTYDADAF 559
            GYDP++S+I +D+LA+F+R+P+TGD+ EVPGI   A +KLA+GE +D+V NTYQLIGKFL LK  D ++ +  ++   HCD FWYWL+SK++ ++RSGIV AIAEKVNT +PG YDA  F
Sbjct:    4 GYDPQKSRIAEDRLADFLRAPLTGDLLEVPGIGSAAISKLASGEEEDRVCNTYQLIGKFLMLKKNDEENEEELIECSAHCDAFWYWLKSKQITAYRSGIVMAIAEKVNTMLPGIYDAADF 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig164.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ44_ECTSI1.070e-6678.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4N7_9STRA8.370e-5665.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0QZN8_THAOC2.190e-5463.93Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2V4V0_9STRA8.340e-5363.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1ZJR7_TRICV2.250e-5161.11Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2R0A3_9STRA4.140e-4858.68Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A2D4C4D0_PYTIN2.680e-4660.33Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6U3Z2B1_9STRA5.030e-4659.20Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K3WZ09_GLOUD5.540e-4658.06Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
F0WQ47_9STRA7.590e-4658.33Uncharacterized protein AlNc14C194G8527 n=2 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig164contigP-wetherbeei_contig164:9131..10083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ44
Model size795
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.89e-69
EggNOG OGs2ARS8@1|root,2RZN0@2759|Eukaryota
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186085.9558654-UTR-P-wetherbeei_contig164:9130..92121683186085.9558654-UTR-P-wetherbeei_contig164:9130..9212Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig164 9131..9212 +
1683186085.9849932-UTR-P-wetherbeei_contig164:9856..100831683186085.9849932-UTR-P-wetherbeei_contig164:9856..10083Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig164 9857..10083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186085.9665449-CDS-P-wetherbeei_contig164:9212..94191683186085.9665449-CDS-P-wetherbeei_contig164:9212..9419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig164 9213..9419 +
1683186085.9760902-CDS-P-wetherbeei_contig164:9577..98561683186085.9760902-CDS-P-wetherbeei_contig164:9577..9856Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig164 9578..9856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig164.8.1prot_P-wetherbeei_contig164.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig164 9213..9856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig164.8.1

>prot_P-wetherbeei_contig164.8.1 ID=prot_P-wetherbeei_contig164.8.1|Name=mRNA_P-wetherbeei_contig164.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
MVSLHSLKVTVCPFPRTSSVSTRLGTDTSSISILVRPQAATGYDPKRSKI
NDDKLAEFIRSPITGDITEVPGIADGARTKLAAGEGDDKVTNTYQLIGKF
LALKGPDSKDHKVDSVEHCDKFWYWLQSKEVNSHRSGIVNAIAEKVNTWM
PGTYDADAFES*
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mRNA from alignment at P-wetherbeei_contig164:9131..10083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig164.8.1 ID=mRNA_P-wetherbeei_contig164.8.1|Name=mRNA_P-wetherbeei_contig164.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=953bp|location=Sequence derived from alignment at P-wetherbeei_contig164:9131..10083+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGGACCCCGGAAGCCTCTATCAATCTACACTACGTCGACGCTTCATCC CTGCTACCTCCCTAGCTCAAGCATCTTTCAGAATGGTGAGCTTGCACTCT CTCAAAGTGACCGTTTGCCCCTTTCCTCGAACGAGCTCCGTTTCAACACG ATTAGGCACTGACACCTCATCAATCTCCATTCTCGTTCGCCCGCAGGCTG CCACAGGATACGACCCCAAGAGGAGTAAGATCAACGACGACAAGCTCGCC GAGTTCATTCGATCACCAATCACGGGAGATATCACCGAGGTGAGGTCAAA GCCTTGGGCCCGGAGATCGGACGGTCACGGTCGTCTTTAAAGCAATGCCT CTGCTGTTGTCACGCGCCTCGATAAACCGATCTTGGGCATCATCGCACGC TCTCAATCAAGCCTCAATCTCAACCCCTTTCAATCATCTTCTCCTAGGTT CCTGGGATTGCAGATGGCGCAAGAACAAAGCTGGCCGCTGGGGAGGGCGA CGACAAGGTGACGAACACCTACCAACTGATCGGAAAGTTCCTTGCGCTCA AGGGCCCAGACAGCAAGGACCACAAAGTGGACAGCGTCGAGCACTGCGAC AAGTTCTGGTACTGGCTGCAGAGCAAGGAGGTGAACTCCCACCGGAGCGG CATCGTCAACGCCATCGCCGAAAAGGTCAACACGTGGATGCCCGGCACCT ATGACGCCGATGCGTTTGAGTCGTAAATGGCAGATTGACTCAGCGTCGCC TCCGCCTTTCTTCGGGCGCCCAGGCGGCATCATTTTCCCGGCGTCACGAG CGCCGAAACCTTGGGATACTGGCGTGGCCGGGATGCGCAGGCGGGCGGTG GCACAAGAGGCAGTTGAGGTGCTTTCTTCCTTTGCCTCTCCCTTGTGATA TACCTTGTCATCTGTGAGGAAGAATATACCTAATATAAAAATCTTGCACA TCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig164:9131..10083+

>mRNA_P-wetherbeei_contig164.8.1 ID=mRNA_P-wetherbeei_contig164.8.1|Name=mRNA_P-wetherbeei_contig164.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig164:9131..10083+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAGCTTGCACTCTCTCAAAGTGACCGTTTGCCCCTTTCCTCGAAC
GAGCTCCGTTTCAACACGATTAGGCACTGACACCTCATCAATCTCCATTC
TCGTTCGCCCGCAGGCTGCCACAGGATACGACCCCAAGAGGAGTAAGATC
AACGACGACAAGCTCGCCGAGTTCATTCGATCACCAATCACGGGAGATAT
CACCGAGGTTCCTGGGATTGCAGATGGCGCAAGAACAAAGCTGGCCGCTG
GGGAGGGCGACGACAAGGTGACGAACACCTACCAACTGATCGGAAAGTTC
CTTGCGCTCAAGGGCCCAGACAGCAAGGACCACAAAGTGGACAGCGTCGA
GCACTGCGACAAGTTCTGGTACTGGCTGCAGAGCAAGGAGGTGAACTCCC
ACCGGAGCGGCATCGTCAACGCCATCGCCGAAAAGGTCAACACGTGGATG
CCCGGCACCTATGACGCCGATGCGTTTGAGTCGTAA
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