mRNA_P-wetherbeei_contig164.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig164.7.1
Unique NamemRNA_P-wetherbeei_contig164.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig164.7.1 vs. uniprot
Match: A0A7S1UJY0_9STRA (Protein yippee-like n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJY0_9STRA)

HSP 1 Score: 179 bits (453), Expect = 2.280e-55
Identity = 79/112 (70.54%), Postives = 97/112 (86.61%), Query Frame = 1
Query:   22 MGRIFKRYLEGPQIFTCCDCGTHLSSNDQILSKSFHGRGGRAFLFNTAVNVSTGPLEKRHLITGLHTVADIYCNGCQTLLGWKYEEASDESQKYKVGKYILEKTRLAKESWS 357
            MGRIF+RYLEGP+I+ C  CGTHLS+NDQI+S++FHGRGGRAFLFNTA+NVSTGP E+R LITG+H VADIYC  CQ L+GW YE+A + +QKYK GK+ILEKT+++K  WS
Sbjct:    1 MGRIFRRYLEGPKIYCCEGCGTHLSTNDQIISRAFHGRGGRAFLFNTAINVSTGPPERRMLITGMHVVADIYCIQCQALIGWTYEQAFEPTQKYKEGKFILEKTKISKVEWS 112          
BLAST of mRNA_P-wetherbeei_contig164.7.1 vs. uniprot
Match: A0A7S2SVP3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVP3_9STRA)

HSP 1 Score: 177 bits (448), Expect = 5.690e-54
Identity = 79/113 (69.91%), Postives = 98/113 (86.73%), Query Frame = 1
Query:   19 AMGRIFKRYLEGPQIFTCCDCGTHLSSNDQILSKSFHGRGGRAFLFNTAVNVSTGPLEKRHLITGLHTVADIYCNGCQTLLGWKYEEASDESQKYKVGKYILEKTRLAKESWS 357
            +MGR+ + +LEGP IF C +C THLS+ND+I+SK+FHGRGGRA+LF+TAVNVSTGPLEKR LITGLH V D+YC  C +++GWKYEEA +ESQKYKVGK+ILEK +LAKE W+
Sbjct:   29 SMGRLHRVHLEGPDIFVCVECRTHLSTNDKIISKAFHGRGGRAYLFDTAVNVSTGPLEKRVLITGLHIVCDLYCISCGSVVGWKYEEAFEESQKYKVGKFILEKPKLAKEDWA 141          
BLAST of mRNA_P-wetherbeei_contig164.7.1 vs. uniprot
Match: A0A835Z468_9STRA (Protein yippee-like n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z468_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.110e-53
Identity = 77/106 (72.64%), Postives = 93/106 (87.74%), Query Frame = 1
Query:   22 MGRIFKRYLEGPQIFTCCDCGTHLSSNDQILSKSFHGRGGRAFLFNTAVNVSTGPLEKRHLITGLHTVADIYCNGCQTLLGWKYEEASDESQKYKVGKYILEKTRL 339
            MGRIFKRYLEGPQI++C +CGTH ++   I+S++FHGRGGRAFLFN AVNV+ GPLEKR LITG+HTVADIYC  CQ+L+GW+YE A +ESQKYK GK+ILEKTR+
Sbjct:    1 MGRIFKRYLEGPQIYSCLECGTHFTTKQDIISENFHGRGGRAFLFNQAVNVTQGPLEKRMLITGMHTVADIYCVDCQSLVGWRYERAFEESQKYKEGKFILEKTRM 106          
BLAST of mRNA_P-wetherbeei_contig164.7.1 vs. uniprot
Match: A0A7R9U7K2_9STRA (Protein yippee-like n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7K2_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.430e-53
Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 1
Query:   22 MGRIFKRYLEGPQIFTCCDCGTHLSSNDQILSKSFHGRGGRAFLFNTAVNVSTGPLEKRHLITGLHTVADIYCNGCQTLLGWKYEEASDESQKYKVGKYILEKTRLAKESWS 357
            MGRIF+RYLEGP+I+ C  CGTHLS+NDQI+S+ F GRGG+A+LFN AVNV TGP E+R LITGLH VADIYC  C++L+GW YEEA D SQKYK GK+ILEKT++ K  WS
Sbjct:    1 MGRIFRRYLEGPKIYCCSTCGTHLSTNDQIISRRFRGRGGQAYLFNRAVNVMTGPSERRVLITGLHVVADIYCIQCESLIGWTYEEAFDRSQKYKEGKFILEKTKITKSEWS 112          
BLAST of mRNA_P-wetherbeei_contig164.7.1 vs. uniprot
Match: A0A1Y1IRS2_KLENI (Protein yippee-like n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IRS2_KLENI)

HSP 1 Score: 166 bits (421), Expect = 3.590e-50
Identity = 74/117 (63.25%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    4 GEEASAMGRIFKRYLEGPQIFTCCDCGTHLSSNDQILSKSFHGRGGRAFLFNTAVNVSTGPLEKRHLITGLHTVADIYCNGCQTLLGWKYEEASDESQKYKVGKYILEKTRLAKESW 354
            GE    MGRIF++YL GP+I++C +C  H + +D+I+SK F GR GRA+LFN+ VNV+ GP E RHL TGLHTVADIYC+ CQ +LGWKYE+A DESQKYK GKYI+EK R+ KE+W
Sbjct:   28 GELPIDMGRIFRQYLNGPRIYSCSNCRCHSADHDEIISKQFQGRYGRAYLFNSVVNVTLGPKEDRHLTTGLHTVADIYCSCCQQILGWKYEQAYDESQKYKEGKYIIEKARMMKENW 144          
BLAST of mRNA_P-wetherbeei_contig164.7.1 vs. uniprot
Match: A0A5B8MU59_9CHLO (Protein yippee-like n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MU59_9CHLO)

HSP 1 Score: 159 bits (401), Expect = 1.440e-47
Identity = 72/112 (64.29%), Postives = 91/112 (81.25%), Query Frame = 1
Query:   22 MGRIFKRYLEGPQIFTCCDCGTHLSSNDQILSKSFHGRGGRAFLFNTAVNVSTGPLEKRHLITGLHTVADIYCNGCQTLLGWKYEEASDESQKYKVGKYILEKTRLAKE-SW 354
            MGR+FK+YL GP+I++C +C  H S +D+I+SK+F GR GRA+LFN  VNV+ GP E R LITGLHTVADIYC+ CQ +LGWKYE+A +ESQKYK GKYI+EK ++ KE SW
Sbjct:    1 MGRLFKQYLNGPRIYSCSNCRCHTSDHDEIVSKAFQGRHGRAYLFNNVVNVTLGPKEDRLLITGLHTVADIYCSCCQQVLGWKYEQAFEESQKYKEGKYIIEKAKMVKEGSW 112          
BLAST of mRNA_P-wetherbeei_contig164.7.1 vs. uniprot
Match: W7TVT6_9STRA (Protein yippee-like n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVT6_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.100e-46
Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 1
Query:   16 SAMGRIFKRYLEGPQIFTCCDCGTHLSSNDQILSKSFHGRGGRAFLFNTAVNVSTGPLEKRHLITGLHTVADIYCNGCQTLLGWKYEEASDESQKYKVGKYILEKTRLAKE 348
            S +     RYL+GPQI+ C  C THLS+NDQI+SK F GRGGRAFL++  +NV+TG  EKR LITGLHTVADI+C  CQ LLGWKYEEA +ESQKYK GKYILEKT + K+
Sbjct:    7 SFLASSASRYLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKD 117          
BLAST of mRNA_P-wetherbeei_contig164.7.1 vs. uniprot
Match: A0A7S0WSD2_9CHLO (Protein yippee-like n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WSD2_9CHLO)

HSP 1 Score: 156 bits (394), Expect = 1.670e-46
Identity = 69/109 (63.30%), Postives = 90/109 (82.57%), Query Frame = 1
Query:   22 MGRIFKRYLEGPQIFTCCDCGTHLSSNDQILSKSFHGRGGRAFLFNTAVNVSTGPLEKRHLITGLHTVADIYCNGCQTLLGWKYEEASDESQKYKVGKYILEKTRLAKE 348
            MGR+FK+YL GP+I++C +C TH + +D+I+SKSF GR GRAFLF+  VNV+ GP E R LITGLHTVADIYC+ CQ +LGWKYE+A +E+QKYK GK+I+EK ++ KE
Sbjct:    1 MGRLFKQYLSGPRIYSCSNCRTHSADHDEIISKSFQGRHGRAFLFSNVVNVTLGPKEDRLLITGLHTVADIYCSCCQAVLGWKYEQAFEENQKYKEGKFIVEKAKMMKE 109          
BLAST of mRNA_P-wetherbeei_contig164.7.1 vs. uniprot
Match: L8GWC8_ACACA (Protein yippee-like n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWC8_ACACA)

HSP 1 Score: 155 bits (391), Expect = 4.940e-46
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = 1
Query:   22 MGRIFKRYLEGPQIFTCCDCGTHLSSNDQILSKSFHGRGGRAFLFNTAVNVSTGPLEKRHLITGLHTVADIYCNGCQTLLGWKYEEASDESQKYKVGKYILEKTRLAKES 351
            MG++FK YL G  ++TC  C +HL+  D+I+SK+F GR G+A+LF++ VNVSTGP E R L+TGLHTVADI CN C +++GWKYEEA +ESQ+YKVGKYILEKT+LAK++
Sbjct:    1 MGKVFKTYLSGSVVYTCSRCNSHLARADEIVSKAFQGRHGQAYLFSSVVNVSTGPREDRILLTGLHTVADISCNDCHSVVGWKYEEAVEESQQYKVGKYILEKTKLAKKT 110          
BLAST of mRNA_P-wetherbeei_contig164.7.1 vs. uniprot
Match: A0A8J4B653_9CHLO (Protein yippee-like n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B653_9CHLO)

HSP 1 Score: 154 bits (389), Expect = 4.830e-45
Identity = 69/111 (62.16%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   16 SAMGRIFKRYLEGPQIFTCCDCGTHLSSNDQILSKSFHGRGGRAFLFNTAVNVSTGPLEKRHLITGLHTVADIYCNGCQTLLGWKYEEASDESQKYKVGKYILEKTRLAKE 348
            + MGR FK+YL GP+I++C  C  H + +D I+SK+F GR GRA+L N AVNV+ GP E+R LITGLHTVADIYC  C T+LGWKYE A +ESQKYK GKYI+EK ++ KE
Sbjct:   51 NGMGRPFKQYLSGPRIYSCATCRAHAADHDDIISKAFQGRHGRAYLINNAVNVTLGPKEERVLITGLHTVADIYCTSCNTVLGWKYEHAFEESQKYKEGKYIIEKAKVLKE 161          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig164.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1UJY0_9STRA2.280e-5570.54Protein yippee-like n=1 Tax=Phaeomonas parva TaxID... [more]
A0A7S2SVP3_9STRA5.690e-5469.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z468_9STRA1.110e-5372.64Protein yippee-like n=1 Tax=Tribonema minus TaxID=... [more]
A0A7R9U7K2_9STRA1.430e-5369.64Protein yippee-like n=1 Tax=Pinguiococcus pyrenoid... [more]
A0A1Y1IRS2_KLENI3.590e-5063.25Protein yippee-like n=1 Tax=Klebsormidium nitens T... [more]
A0A5B8MU59_9CHLO1.440e-4764.29Protein yippee-like n=1 Tax=Chloropicon primus Tax... [more]
W7TVT6_9STRA1.100e-4666.67Protein yippee-like n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S0WSD2_9CHLO1.670e-4663.30Protein yippee-like n=1 Tax=Pyramimonas obovata Ta... [more]
L8GWC8_ACACA4.940e-4662.73Protein yippee-like n=1 Tax=Acanthamoeba castellan... [more]
A0A8J4B653_9CHLO4.830e-4562.16Protein yippee-like n=1 Tax=Volvox africanus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig164contigP-wetherbeei_contig164:8337..9036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3067.XP_002952928.1
PFAMsYippee-Mis18
Model size477
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.9e-47
EggNOG OGsKOG3399@1|root,KOG3399@2759|Eukaryota,37URI@33090|Viridiplantae,34KT3@3041|Chlorophyta
DescriptionBelongs to the yippee family
Cds size339
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186085.8998997-UTR-P-wetherbeei_contig164:8336..84531683186085.8998997-UTR-P-wetherbeei_contig164:8336..8453Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig164 8337..8453 -
1683186085.9277415-UTR-P-wetherbeei_contig164:9015..90361683186085.9277415-UTR-P-wetherbeei_contig164:9015..9036Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig164 9016..9036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186085.911097-CDS-P-wetherbeei_contig164:8453..86021683186085.911097-CDS-P-wetherbeei_contig164:8453..8602Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig164 8454..8602 -
1683186085.919562-CDS-P-wetherbeei_contig164:8825..90151683186085.919562-CDS-P-wetherbeei_contig164:8825..9015Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig164 8826..9015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig164.7.1prot_P-wetherbeei_contig164.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig164 8454..9015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig164.7.1

>prot_P-wetherbeei_contig164.7.1 ID=prot_P-wetherbeei_contig164.7.1|Name=mRNA_P-wetherbeei_contig164.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MGRIFKRYLEGPQIFTCCDCGTHLSSNDQILSKSFHGRGGRAFLFNTAVN
VSTGPLEKRHLITGLHTVADIYCNGCQTLLGWKYEEASDESQKYKVGKYI
LEKTRLAKESWS*
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mRNA from alignment at P-wetherbeei_contig164:8337..9036-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig164.7.1 ID=mRNA_P-wetherbeei_contig164.7.1|Name=mRNA_P-wetherbeei_contig164.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=700bp|location=Sequence derived from alignment at P-wetherbeei_contig164:8337..9036- (Phaeothamnion wetherbeei SAG_119_79)
AGCGGCGAGGAGGCGAGCGCGATGGGCCGGATCTTCAAGCGCTACCTGGA AGGACCGCAGATCTTCACGTGCTGCGACTGCGGCACGCACCTCTCGTCGA ACGACCAGATCCTCTCCAAGTCCTTTCACGGTCGCGGAGGCCGGGCCTTC CTATTCAACACGGCGGTGAACGTGTCCACCGGTCCTCTGGAAAAGCGGCA CCTCATCACAGGTGTGTCCTTGAGTTTCCCCCGCCATGCTCTTTTCTCTC CTTGCCTGAGCAAGAAGACCTCTACAAAATGATCGCAAGACTCGCTCGCC CCACTCTCCCTGAATTTCTTTCTAGCTCGTATCACGCTTCCTTGCTCTTC GCGTATGTTGGTTCTGCAAGCTCATTTGAAGACCCTCTTTTCCTCATTTG AAGACCCTCTTTTCGCCCCTCTCCTCTCTTTCAGGCCTGCACACGGTGGC AGACATCTACTGCAATGGTTGCCAGACATTGCTGGGCTGGAAGTACGAAG AGGCCTCCGACGAAAGCCAGAAGTACAAAGTAGGGAAGTACATACTAGAG AAGACGCGTTTGGCAAAGGAGTCTTGGAGCTGAGAGAAAGAGGAAATAAC AAAGTTGTGCAAAAGCGTTGTTCGTCGGCCGCAAACGGGGCGAGGCGCTG TAAATACAGGAAAAGGTCAGAGTAGAAGAGTAAACGAAAGGATCGCGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig164:8337..9036-

>mRNA_P-wetherbeei_contig164.7.1 ID=mRNA_P-wetherbeei_contig164.7.1|Name=mRNA_P-wetherbeei_contig164.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig164:8337..9036- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCGGATCTTCAAGCGCTACCTGGAAGGACCGCAGATCTTCACGTG
CTGCGACTGCGGCACGCACCTCTCGTCGAACGACCAGATCCTCTCCAAGT
CCTTTCACGGTCGCGGAGGCCGGGCCTTCCTATTCAACACGGCGGTGAAC
GTGTCCACCGGTCCTCTGGAAAAGCGGCACCTCATCACAGGCCTGCACAC
GGTGGCAGACATCTACTGCAATGGTTGCCAGACATTGCTGGGCTGGAAGT
ACGAAGAGGCCTCCGACGAAAGCCAGAAGTACAAAGTAGGGAAGTACATA
CTAGAGAAGACGCGTTTGGCAAAGGAGTCTTGGAGCTGA
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