mRNA_P-wetherbeei_contig164.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig164.3.1
Unique NamemRNA_P-wetherbeei_contig164.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig164.3.1 vs. uniprot
Match: D7FUI1_ECTSI (Ankyrin repeat protein E2_17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUI1_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.550e-30
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 2 
Query:   95 DVFGLTALHYAVWNGHIRCVEILCANSLGRDKNGELKSALHLVSRKGWTPLHLAAAESIEGARCVPILVAFGAALDAIDFEERTPLNHAMQAGRSDCVAALN 400
            D FGL+ALHYA WNGH+RCVEILC N LG D  G  +S + L S KGWTPLHLAA++ + G +C+  L+  GA     D + +T L  A+ AGR DC  ALN
Sbjct:    2 DDFGLSALHYASWNGHVRCVEILCINDLGHDGAGLQRSCIDLRSIKGWTPLHLAASDGVNGMKCIDALLRAGADRSIRDVDGKTALEAAIDAGRDDCARALN 103
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BLAST of mRNA_P-wetherbeei_contig164.3.1 vs. uniprot
Match: A0A7S4VTH5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VTH5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.630e-20
Identity = 60/157 (38.22%), Postives = 84/157 (53.50%), Query Frame = 2 
Query:    2 MSSELLRNAALHGKAEALLELLAAGANPCGADVFGLTALHYAVWNGHIRCVEILCANSLGRD-KNGELKSALHLVSRKGWTPLHLAA----------------------AESIEGARCVPILVAFGAALDAI-DFEERTPLNHAMQAGRSDCVAALN 400
            MS + LRN A+ G    L  LLA GANPC  D  GLTALHYAVWNGH++CVEIL AN  G+  + G++ S+++L S+ G+T LH+ A                       +  E   C  +L+  GA   A+ D E ++ ++ A +AG    V+  N
Sbjct:    1 MSGDQLRNFAVVGYFLELKNLLAGGANPCSVDEKGLTALHYAVWNGHLQCVEILVANHWGKHHETGDVCSSINLQSKTGYTALHIVAMRMAALLEDESYDANENSDERQTKESENIECCRLLLMVGADCIALRDIEGKSAIDLAREAGNESLVSVFN 157
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BLAST of mRNA_P-wetherbeei_contig164.3.1 vs. uniprot
Match: A0A835Z6I7_9STRA (Ankyrin repeat protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6I7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.010e-17
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 2 
Query:  104 GLTALHYAVWNGHIRCVEILCANSLGRDKNGELKSALHLVSRKGWTPLHLAAAESIEGARCVPILVAFGAALDAIDFEERTPLNHAMQAGRSDCVAALN 400
            GLTALHYAV+NG+  CVE+LCAN+ G D NG   S + +VS  G T LHLAAAE+   A  + IL++ GA     D + RT  + A + GR      L+
Sbjct:    5 GLTALHYAVFNGNTLCVEVLCANASGHDANGHHCSCIDMVSTMGCTALHLAAAEASNAAAIIEILLSSGADAAIRDGQGRTAADVAAEKGRHQYAEVLS 103
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BLAST of mRNA_P-wetherbeei_contig164.3.1 vs. uniprot
Match: A0A482S1M6_9ARCH (Ankyrin repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1M6_9ARCH)

HSP 1 Score: 76.6 bits (187), Expect = 1.440e-15
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 2 
Query:    2 MSSELLRNAALHGKAEALLELLAAGANPCGADVFGLTALHYAVWNGHIRCVEILCANSLGRDKNGELKSALHLVSRKGWTPLH 250
            MS   +R A +H + E L  L+ A AN C  D +GLTALHYAVWNGH+ CV++L  NS G D  G+  + L++ S  G T  H
Sbjct:    1 MSEAKVRQACIHNRIEELEVLVKARANVCSIDEWGLTALHYAVWNGHVECVKLLVFNSHGVDSKGQKTTCLNMKSCIGLTGTH 83
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BLAST of mRNA_P-wetherbeei_contig164.3.1 vs. uniprot
Match: F0YDZ5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDZ5_AURAN)

HSP 1 Score: 67.0 bits (162), Expect = 3.580e-10
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 2 
Query:    2 MSSELLRNAALHGKAEALLELLAAGANPCGADVFGLTALHYAVWNGHIRCVEILCANSLG 181
            MS  +LR  A  G A  L EL+  G NPC +D  GL  LH+A WNGH+ CVE+L  N LG
Sbjct:    1 MSGTVLRETAAQGDATYLRELILGGGNPCSSDENGLCPLHFATWNGHVECVELLVVNDLG 60
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BLAST of mRNA_P-wetherbeei_contig164.3.1 vs. uniprot
Match: A0A7S2RNC7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNC7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.220e-8
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 2 
Query:  110 TALHYAVWNGHIRCVEILCANSLGRDKNGELKSALHLVSRK-GWTPLHLAAAESIEGARCVPILVAFG 310
            TALHYAV NGH+  VE+LC N  GRD++G + SAL   ++  GW+ LH A A           L+A G
Sbjct:   16 TALHYAVLNGHLYSVELLCMNDKGRDEDGNISSALQYQTKDVGWSALHCAVARGKHAVAMTRALIALG 83
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BLAST of mRNA_P-wetherbeei_contig164.3.1 vs. uniprot
Match: UPI000F6860E2 (transient receptor potential channel pyrexia-like isoform X2 n=2 Tax=Penaeus TaxID=133894 RepID=UPI000F6860E2)

HSP 1 Score: 54.7 bits (130), Expect = 7.470e-6
Identity = 46/131 (35.11%), Postives = 60/131 (45.80%), Query Frame = 2 
Query:   35 HGKAEALLELLAAGANPCGADVFGLTALHYAVWNGHIRCVEILCANSLGRDKNGELKSALHLVSRKGWTPLHLAAAESIEG------ARCVPILVAFGAALDAIDFEERTPLNHAMQAGRSDCVAALNRAQ 409
            H   EA+LEL+AAGAN   AD  G+T LH A   GHI  + IL A     D           +     TPLH AA  +  G         V +L++ GA L   D + R  L++A  AG S  +  L R +
Sbjct:   76 HDFTEAVLELVAAGANVNLADAAGITPLHMASGGGHISTLRILIARGAPPDP----------LDNHARTPLHYAARAANPGPGGSNFVSVVEMLLSAGALLGRRDADGRLALHNAATAGSSKLIKILVRGR 196
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BLAST of mRNA_P-wetherbeei_contig164.3.1 vs. uniprot
Match: A0A3R7LSC8_PENVA (Ion_trans domain-containing protein n=4 Tax=Penaeus TaxID=133894 RepID=A0A3R7LSC8_PENVA)

HSP 1 Score: 54.7 bits (130), Expect = 7.680e-6
Identity = 46/131 (35.11%), Postives = 60/131 (45.80%), Query Frame = 2 
Query:   35 HGKAEALLELLAAGANPCGADVFGLTALHYAVWNGHIRCVEILCANSLGRDKNGELKSALHLVSRKGWTPLHLAAAESIEG------ARCVPILVAFGAALDAIDFEERTPLNHAMQAGRSDCVAALNRAQ 409
            H   EA+LEL+AAGAN   AD  G+T LH A   GHI  + IL A     D           +     TPLH AA  +  G         V +L++ GA L   D + R  L++A  AG S  +  L R +
Sbjct:   76 HDFTEAVLELVAAGANVNLADAAGITPLHMASGGGHISTLRILIARGAPPDP----------LDNHARTPLHYAARAANPGPGGSNFVSVVEMLLSAGALLGRRDADGRLALHNAATAGSSKLIKILVRGR 196
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BLAST of mRNA_P-wetherbeei_contig164.3.1 vs. uniprot
Match: A0A8C6BC76_MONMO (Ankyrin repeat domain 28 n=18 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8C6BC76_MONMO)

HSP 1 Score: 54.7 bits (130), Expect = 7.700e-6
Identity = 36/107 (33.64%), Postives = 52/107 (48.60%), Query Frame = 2 
Query:   77 ANPCGADVFGLTALHYAVWNGHIRCVEILCANSLGRDKNGELKSALHLVSRKGWTPLHLAAAESIEGARCVPILVAFGAALDAIDFEERTPLNHAMQAGRSDCVAAL 397
            ANP  AD  G TALH+A +NGH  CVE+L    + +   G             ++PLH A     EGA  + I     ++++A D + RTPL+ A      +C+  L
Sbjct:  777 ANPAMADNHGYTALHWACYNGHETCVELLLEQDVFQKTEGN-----------AFSPLHCAVINDNEGAAEMLIDTLGASSVNATDSKGRTPLHAAAFTDHVECLQLL 872
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BLAST of mRNA_P-wetherbeei_contig164.3.1 vs. uniprot
Match: A0A2U4B9S9_TURTR (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X2 n=2 Tax=Cetacea TaxID=9721 RepID=A0A2U4B9S9_TURTR)

HSP 1 Score: 54.7 bits (130), Expect = 7.750e-6
Identity = 36/107 (33.64%), Postives = 52/107 (48.60%), Query Frame = 2 
Query:   77 ANPCGADVFGLTALHYAVWNGHIRCVEILCANSLGRDKNGELKSALHLVSRKGWTPLHLAAAESIEGARCVPILVAFGAALDAIDFEERTPLNHAMQAGRSDCVAAL 397
            ANP  AD  G TALH+A +NGH  CVE+L    + +   G             ++PLH A     EGA  + I     ++++A D + RTPL+ A      +C+  L
Sbjct:  765 ANPAMADNHGYTALHWACYNGHETCVELLLEQDVFQKTEGN-----------AFSPLHCAVINDNEGAAEMLIDTLGASSVNATDSKGRTPLHAAAFTDHVECLQLL 860
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig164.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUI1_ECTSI2.550e-3053.92Ankyrin repeat protein E2_17 n=2 Tax=Ectocarpus Ta... [more]
A0A7S4VTH5_9STRA4.630e-2038.22Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A835Z6I7_9STRA1.010e-1746.46Ankyrin repeat protein (Fragment) n=1 Tax=Tribonem... [more]
A0A482S1M6_9ARCH1.440e-1546.99Ankyrin repeat protein n=1 Tax=archaeon TaxID=1906... [more]
F0YDZ5_AURAN3.580e-1051.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2RNC7_9STRA3.220e-845.59Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI000F6860E27.470e-635.11transient receptor potential channel pyrexia-like ... [more]
A0A3R7LSC8_PENVA7.680e-635.11Ion_trans domain-containing protein n=4 Tax=Penaeu... [more]
A0A8C6BC76_MONMO7.700e-633.64Ankyrin repeat domain 28 n=18 Tax=Boreoeutheria Ta... [more]
A0A2U4B9S9_TURTR7.750e-633.64serine/threonine-protein phosphatase 6 regulatory ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig164contigP-wetherbeei_contig164:4616..5266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog9739.XP_004321283.1
Preferred nameANKRD28
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5
Model size439
Max annot lvl33208|Metazoa
KEGG koko:K15502
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0016050,GO:0016192,GO:0022607,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0065003,GO:0070013,GO:0071840,GO:0090114
Exons2
Evalue3.58e-07
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,39YNX@33154|Opisthokonta,3B9NB@33208|Metazoa,3CRFJ@33213|Bilateria,47ZCI@7711|Chordata,48XCP@7742|Vertebrata,3J221@40674|Mammalia,4IY8H@91561|Cetartiodactyla
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-21_003800.1
DescriptionSerine threonine-protein phosphatase 6 regulatory ankyrin repeat subunit
Cds size438
COG categoryS
BRITEko00000,ko01009,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186085.6910768-UTR-P-wetherbeei_contig164:4615..46161683186085.6910768-UTR-P-wetherbeei_contig164:4615..4616Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig164 4616..4616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186085.7059221-CDS-P-wetherbeei_contig164:4616..47121683186085.7059221-CDS-P-wetherbeei_contig164:4616..4712Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig164 4617..4712 +
1683186085.7165422-CDS-P-wetherbeei_contig164:4924..52661683186085.7165422-CDS-P-wetherbeei_contig164:4924..5266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig164 4925..5266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig164.3.1prot_P-wetherbeei_contig164.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig164 4617..5266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig164.3.1

>prot_P-wetherbeei_contig164.3.1 ID=prot_P-wetherbeei_contig164.3.1|Name=mRNA_P-wetherbeei_contig164.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MSSELLRNAALHGKAEALLELLAAGANPCGADVFGLTALHYAVWNGHIRC
VEILCANSLGRDKNGELKSALHLVSRKGWTPLHLAAAESIEGARCVPILV
AFGAALDAIDFEERTPLNHAMQAGRSDCVAALNRAQEEKEARDKV*
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mRNA from alignment at P-wetherbeei_contig164:4616..5266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig164.3.1 ID=mRNA_P-wetherbeei_contig164.3.1|Name=mRNA_P-wetherbeei_contig164.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=651bp|location=Sequence derived from alignment at P-wetherbeei_contig164:4616..5266+ (Phaeothamnion wetherbeei SAG_119_79)
AATGAGTTCAGAGCTCCTCCGGAACGCCGCACTCCATGGTAAGGCGGAAG
CTCTCTTGGAGCTCCTGGCTGCCGGCGCGAACCCTTGCGGCGCAGACGTG
AGTGAAAAAAACTGAATCCTTCCATATCGGAAGTGTCCAGAGGATGAGAG
GATGAAGCCGTTTGTCTTCGCCCATCATGCTAATCTGATTATATTAGTAA
GCGATCGAGTAGGGATGGCTGCAAAGCATTGCGCTTTCCTTTTCATTCCT
TCTACAATATGACACCCTTCTCGGTGTCTCCCTCACGACCCTAACCATTC
CATTTTCAGGTGTTCGGCCTTACGGCGCTTCATTACGCGGTCTGGAACGG
CCACATAAGATGCGTTGAGATTCTTTGCGCCAATTCTCTTGGGCGCGACA
AAAATGGAGAGTTGAAGAGCGCTCTGCACTTGGTTAGTCGCAAGGGTTGG
ACACCGCTACACCTCGCGGCGGCGGAGAGTATCGAAGGCGCACGCTGTGT
GCCGATCCTAGTTGCATTTGGAGCTGCGCTGGACGCAATCGATTTTGAAG
AGCGAACGCCGCTCAACCATGCAATGCAAGCGGGGCGCAGCGACTGCGTC
GCAGCACTGAACAGGGCTCAGGAGGAAAAAGAGGCAAGGGATAAGGTGTG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig164:4616..5266+

>mRNA_P-wetherbeei_contig164.3.1 ID=mRNA_P-wetherbeei_contig164.3.1|Name=mRNA_P-wetherbeei_contig164.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig164:4616..5266+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTTCAGAGCTCCTCCGGAACGCCGCACTCCATGGTAAGGCGGAAGC
TCTCTTGGAGCTCCTGGCTGCCGGCGCGAACCCTTGCGGCGCAGACGTGT
TCGGCCTTACGGCGCTTCATTACGCGGTCTGGAACGGCCACATAAGATGC
GTTGAGATTCTTTGCGCCAATTCTCTTGGGCGCGACAAAAATGGAGAGTT
GAAGAGCGCTCTGCACTTGGTTAGTCGCAAGGGTTGGACACCGCTACACC
TCGCGGCGGCGGAGAGTATCGAAGGCGCACGCTGTGTGCCGATCCTAGTT
GCATTTGGAGCTGCGCTGGACGCAATCGATTTTGAAGAGCGAACGCCGCT
CAACCATGCAATGCAAGCGGGGCGCAGCGACTGCGTCGCAGCACTGAACA
GGGCTCAGGAGGAAAAAGAGGCAAGGGATAAGGTGTGA
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