mRNA_P-wetherbeei_contig16379.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16379.1.1
Unique NamemRNA_P-wetherbeei_contig16379.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16379.1.1 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.580e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:  637 LLLDLFEWLGAASCGLRTVLRRTKV--DPFLSSFATPRHLHFHPNRDVVRVRFAGLVPLAAVSRLIE 831
            L+LD+FEWLGA SCGL   +RR+    +P+LS F TPRHL +  +R V R R  G +P  AVSR ++
Sbjct:  436 LVLDMFEWLGAVSCGLDAAVRRSPSPPEPYLSKFETPRHLRYRRDRVVCRARLRGFLPPVAVSRFVD 502
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BLAST of mRNA_P-wetherbeei_contig16379.1.1 vs. uniprot
Match: UPI000719D647 (ribonuclease P protein subunit p40-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D647)

HSP 1 Score: 61.6 bits (148), Expect = 3.120e-7
Identity = 52/204 (25.49%), Postives = 85/204 (41.67%), Query Frame = 1 
Query:  130 FFAIAAQASAYLGNTFAITPDGKLTLLLDRETFQALGVPAAALPRNAQRAGTPGGGRPVRYRAVIDLTAPSFRPGKGLYDRLLVCLAEDRVGPVRMVAARCRGDPAAATLSAGEVEFPPGFATRRVPLLPVVKILRDVCVPSLDWSRYEGDGNGGNGAAGDDSRNGGRTLLLDLFEWLGAASCGLRTVLRRTKVDPFLSSFATP 741
            F+A++      + N+ A+ P GKL L +D++ ++ LG+      R +  + T    R  ++   ++LT PSF PGK  Y+R   C +E        V      D +  + S G+     G +        +   ++DVCVP L       +                     DLFEWLGA SC + +       + F+S + TP
Sbjct:   90 FYAVSLNTRIDVANSVAVLPTGKLVLSVDKDMYETLGLEG----RRSIFSQT----RERKFVIEVELTKPSFTPGKKNYERTKWCFSERLNLRFDFVFTWVPHDKSICSSSVGKYFSGMGLSVSSCRAQMMSNTMKDVCVPDLLALNILENSQ-------------------DLFEWLGAVSCYIDS--EEEASNDFVSMYTTP 264
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BLAST of mRNA_P-wetherbeei_contig16379.1.1 vs. uniprot
Match: A0A6J8BN03_MYTCO (RPP40 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8BN03_MYTCO)

HSP 1 Score: 60.5 bits (145), Expect = 7.690e-7
Identity = 52/189 (27.51%), Postives = 83/189 (43.92%), Query Frame = 1 
Query:  178 AITPDGKLTLLLDRETFQALGVPA--AALPRNAQRAGTPGGGRPVRYRAVIDLTAPSFRPGKGLYDRLLVCLAEDRVG-PVRMVAARCRGDPAAATLSAGEVEFPPGFATRRVPLLPVVKILRDVCVPSLDWSRYEGDGNGGNGAAGDDSRNGGRTLLLDLFEWLGAASCGLRTVLRRTKVDPFLSSFA 735
            A+ P G L L L ++T+Q LG+    +  P+  +           +Y   IDLT+PSF+PGK  Y+R+  C  +DR+G     ++     D      S  +     G   + V +   +K   DV VP +D S  + D    N                D++EWLG  SCG+  +      D +LS+++
Sbjct:  107 AVLPTGHLILHLSKDTYQQLGLEGKPSQFPKRKKS----------KYIVDIDLTSPSFKPGKKGYNRVKWCF-KDRLGLKFNFISTWTPSDDEICPSSMQKYFTMKGCKCKPVKIKCNMKKYNDVLVPDIDPSHVDFDNMDYN--------------YTDVYEWLGGFSCGIDLLCN---PDDYLSTYS 267
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BLAST of mRNA_P-wetherbeei_contig16379.1.1 vs. uniprot
Match: A0A167XWV2_9PEZI (Ribonuclease P, Rpp40 n=1 Tax=Sporothrix insectorum RCEF 264 TaxID=1081102 RepID=A0A167XWV2_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 1.200e-6
Identity = 60/198 (30.30%), Postives = 85/198 (42.93%), Query Frame = 1 
Query:  169 NTFAITPDGKLTLLLDRETFQALGVPAAALPRNAQRAGTPGGGRPVRYRAVI--DLTAPSFRPGKGLYDRLLVCLAEDRVGPVRMVAARC----RGDPAAATLSAGEVEFPPGFATRRVPLLPVVKILRDVCVPSLDWSRYEGDGNGGNGAAGDDSRNGGRTLLLDLFEWLGAASCGLRTVLRRTKVDPFLSSFATPR 744
            N F +  DG+LTL L+RET++  G+     P   +      G R +R R V+  DL A S  PGK  +DRLL         PV  +          DP AA L       P      RV L P+    R  C+       +  DG+G +  A D++       ++ L+EWL     G   V    ++DP+LS +  PR
Sbjct:  160 NVFTLK-DGRLTLFLERETYERAGL--VGKPHGVK------GNRGLRPRWVVEFDLNAKSMWPGKSGFDRLLYACHNVLNTPVTWLFYNLFDTPNPDPLAAFLPTLVTAVPTILEHNRVALPPLG---RPACLLV-----HNDDGDGPDRVAADEA-------VVALYEWLALVRLGSPRVAADDRIDPYLSRYHVPR 333
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BLAST of mRNA_P-wetherbeei_contig16379.1.1 vs. uniprot
Match: A0A6P8B5A0_MAGGR (Uncharacterized protein n=6 Tax=Pyricularia TaxID=48558 RepID=A0A6P8B5A0_MAGGR)

HSP 1 Score: 54.7 bits (130), Expect = 6.370e-5
Identity = 56/191 (29.32%), Postives = 76/191 (39.79%), Query Frame = 1 
Query:  169 NTFAITPDGKLTLLLDRETFQALGVPAAALPRNAQRAGTPGGGRPVRYRAVIDLTAPSFRPGKGLYDRLLVCLAEDRVGPVRMVAARCRGDPAAATLSAGEVEFPPGFATRRVPLLPVVKILRDVCVPSLDWSRYEGDGNGGNGAAGDDSRNGGRTLLLDLFEWLGAASCGLRTVLRRTKVDPFLSSFATP 741
            N F I  DGKLT+ LDRET++  G+          R     G RP R+    DL AP+  PGK  +DRL+         PV  +       P    L A    FP  + +      P +     V +P+L            N    DD R+       + +EWL     G   VL   KVDP++S +  P
Sbjct:  112 NVFTIK-DGKLTMYLDRETYERAGMVGTTHGVKGDR-----GLRP-RWIVEYDLRAPASFPGKKGFDRLIYATKNALSFPVTWLFCNLGKTPEPDPLLA---HFPTAYTST-----PGITHDFPVLIPALKPES--------NSVIKDD-RDEAERFATETYEWLSLVRLGSPRVLVGDKVDPYISQYTLP 278
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16379.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K807_9PHAE2.580e-1150.75Cyclic nucleotide-binding domain-containing protei... [more]
UPI000719D6473.120e-725.49ribonuclease P protein subunit p40-like n=1 Tax=Pr... [more]
A0A6J8BN03_MYTCO7.690e-727.51RPP40 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8BN03_... [more]
A0A167XWV2_9PEZI1.200e-630.30Ribonuclease P, Rpp40 n=1 Tax=Sporothrix insectoru... [more]
A0A6P8B5A0_MAGGR6.370e-529.32Uncharacterized protein n=6 Tax=Pyricularia TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16379contigP-wetherbeei_contig16379:40..975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog109760.SPPG_00422T0
PFAMsRibonuc_P_40
Model size834
Max annot lvl4751|Fungi
KEGG koko:K14530
KEGG Pathwayko03008,ko03013,map03008,map03013
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.61e-18
EggNOG OGs28JWQ@1|root,2QSAV@2759|Eukaryota,39S65@33154|Opisthokonta,3NVM6@4751|Fungi
Ec32 ortholog descriptionRibonuclease P, Rpp40
Ec32 orthologEc-04_004570.1
EC3.1.26.5
DescriptionRibonuclease P 40kDa (Rpp40) subunit
Cds size834
COG categoryS
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.9712756-CDS-P-wetherbeei_contig16379:39..6731683186084.9712756-CDS-P-wetherbeei_contig16379:39..673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16379 40..673 +
1683186084.981246-CDS-P-wetherbeei_contig16379:775..9751683186084.981246-CDS-P-wetherbeei_contig16379:775..975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16379 776..975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16379.1.1prot_P-wetherbeei_contig16379.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16379 40..975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16379.1.1

>prot_P-wetherbeei_contig16379.1.1 ID=prot_P-wetherbeei_contig16379.1.1|Name=mRNA_P-wetherbeei_contig16379.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=278bp
GFYYDCTGPLVALLRPPFLRAHIAPARPGDGGGGDGDGGGSGGFFAIAAQ
ASAYLGNTFAITPDGKLTLLLDRETFQALGVPAAALPRNAQRAGTPGGGR
PVRYRAVIDLTAPSFRPGKGLYDRLLVCLAEDRVGPVRMVAARCRGDPAA
ATLSAGEVEFPPGFATRRVPLLPVVKILRDVCVPSLDWSRYEGDGNGGNG
AAGDDSRNGGRTLLLDLFEWLGAASCGLRTVLRRTKVDPFLSSFATPRHL
HFHPNRDVVRVRFAGLVPLAAVSRLIER
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mRNA from alignment at P-wetherbeei_contig16379:40..975+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16379.1.1 ID=mRNA_P-wetherbeei_contig16379.1.1|Name=mRNA_P-wetherbeei_contig16379.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=936bp|location=Sequence derived from alignment at P-wetherbeei_contig16379:40..975+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCTACTACGACTGCACTGGCCCGCTCGTCGCGCTGCTCCGCCCGCC
GTTCCTGCGCGCTCACATCGCCCCGGCCCGCCCCGGCGATGGCGGCGGCG
GCGACGGCGATGGGGGAGGAAGCGGCGGTTTTTTTGCGATTGCGGCGCAA
GCATCCGCGTACCTCGGCAACACCTTCGCCATCACCCCCGACGGCAAGCT
GACCCTGCTGCTAGACCGTGAGACCTTCCAGGCGCTCGGCGTGCCCGCCG
CGGCGCTGCCGCGAAATGCCCAGCGGGCCGGCACGCCCGGGGGCGGCCGG
CCGGTGCGTTACCGCGCCGTCATCGACTTGACCGCGCCGAGCTTCCGCCC
CGGCAAGGGCCTCTACGACCGGCTGCTCGTATGCCTGGCGGAGGACCGCG
TCGGGCCGGTCCGGATGGTCGCGGCTCGCTGCCGCGGCGACCCAGCGGCG
GCAACCCTCTCCGCCGGGGAGGTGGAATTCCCACCGGGGTTCGCGACGCG
GCGGGTGCCGCTCCTGCCGGTCGTCAAGATCCTGCGCGACGTCTGCGTCC
CGAGCCTGGACTGGAGCCGCTACGAAGGCGATGGCAATGGTGGCAATGGC
GCCGCCGGCGATGATAGCAGGAACGGAGGGAGAAGTTTCAGCAGCGATCA
AAACCAAACTGCTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACAACA
GCGCTCCGAGAAAACTGGACGGCCGCGCCAAGGGAGCGCTCCTTCTGGAC
CTGTTCGAATGGCTGGGCGCCGCCTCATGCGGCCTCCGCACCGTGCTCCG
CCGCACCAAGGTCGATCCCTTCCTGTCGTCCTTCGCGACGCCGCGCCACC
TCCACTTCCACCCGAACCGCGACGTCGTGCGCGTCCGCTTTGCCGGGCTC
GTGCCGCTGGCAGCGGTTTCGCGTCTCATTGAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16379:40..975+

>mRNA_P-wetherbeei_contig16379.1.1 ID=mRNA_P-wetherbeei_contig16379.1.1|Name=mRNA_P-wetherbeei_contig16379.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=834bp|location=Sequence derived from alignment at P-wetherbeei_contig16379:40..975+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCTACTACGACTGCACTGGCCCGCTCGTCGCGCTGCTCCGCCCGCC
GTTCCTGCGCGCTCACATCGCCCCGGCCCGCCCCGGCGATGGCGGCGGCG
GCGACGGCGATGGGGGAGGAAGCGGCGGTTTTTTTGCGATTGCGGCGCAA
GCATCCGCGTACCTCGGCAACACCTTCGCCATCACCCCCGACGGCAAGCT
GACCCTGCTGCTAGACCGTGAGACCTTCCAGGCGCTCGGCGTGCCCGCCG
CGGCGCTGCCGCGAAATGCCCAGCGGGCCGGCACGCCCGGGGGCGGCCGG
CCGGTGCGTTACCGCGCCGTCATCGACTTGACCGCGCCGAGCTTCCGCCC
CGGCAAGGGCCTCTACGACCGGCTGCTCGTATGCCTGGCGGAGGACCGCG
TCGGGCCGGTCCGGATGGTCGCGGCTCGCTGCCGCGGCGACCCAGCGGCG
GCAACCCTCTCCGCCGGGGAGGTGGAATTCCCACCGGGGTTCGCGACGCG
GCGGGTGCCGCTCCTGCCGGTCGTCAAGATCCTGCGCGACGTCTGCGTCC
CGAGCCTGGACTGGAGCCGCTACGAAGGCGATGGCAATGGTGGCAATGGC
GCCGCCGGCGATGATAGCAGGAACGGAGGGAGAACGCTCCTTCTGGACCT
GTTCGAATGGCTGGGCGCCGCCTCATGCGGCCTCCGCACCGTGCTCCGCC
GCACCAAGGTCGATCCCTTCCTGTCGTCCTTCGCGACGCCGCGCCACCTC
CACTTCCACCCGAACCGCGACGTCGTGCGCGTCCGCTTTGCCGGGCTCGT
GCCGCTGGCAGCGGTTTCGCGTCTCATTGAGCGC
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