mRNA_P-wetherbeei_contig16372.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16372.1.1
Unique NamemRNA_P-wetherbeei_contig16372.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Match: A0A840XHX9_9PROT (Sarcosine oxidase subunit gamma n=3 Tax=Roseomonas alkaliterrae TaxID=1452450 RepID=A0A840XHX9_9PROT)

HSP 1 Score: 70.1 bits (170), Expect = 6.580e-12
Identity = 54/146 (36.99%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   46 ILEVSARRGRENALSELLRAMCGFALPAPGRSEISTLDTALWIAPATFLFLAA---EARCAEIGAAVPADVAAINDQSAGYEAMMLDMSAGSLPLASLCRLDLSK--FAVGHATRTPLGQIPAVLWRP-EHDRYGILVPRTLARTF 465
            +++V ARRGRE+AL+E  RA  G ALP  G++  +   TA+WI P  +LF A    E   A   AA  A +AA+ DQS G   + +   A    LA  CRLDL    F  G A  T +  +  ++ +  E   + + V  TLA  F
Sbjct:   36 MVQVMARRGREDALAEAARAAFGLALPPAGQAAAAPDATAVWIQPGHWLFAAPRGMEGALAARAAAAFAGLAAVADQSHGRTTIAVSGPAARRVLARGCRLDLHPRAFGPGRAAATQIAHVGCLIHQTDEAPVFELTVFATLAEPF 181          
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Match: UPI0018EA9F00 (hypothetical protein n=2 Tax=unclassified Bosea TaxID=2653178 RepID=UPI0018EA9F00)

HSP 1 Score: 61.2 bits (147), Expect = 1.530e-8
Identity = 45/144 (31.25%), Postives = 72/144 (50.00%), Query Frame = 1
Query:   46 ILEVSARRGRENALSELLRAMCGFALPAPGRSEISTLDTALWIAPATFLFLAAEARCAEIGAAVPADV---AAINDQSAGYEAMMLDMSAGSLPLASLCRLDLSK--FAVGHATRTPLGQIPAVLWRPEHD--RYGILVPRTLA 456
            +++V+AR+GR+N +S  L       LPA GR    +  TA+W+ P ++L  A+  +  ++ A +   +   AA+ DQS G     L        LA LCRLDL    F +G +  T +G +   L+R E     + ++V  T A
Sbjct:   35 LVQVTARKGRQNDVSATLGHTFSIELPASGRVASGSAGTAIWVQPGSWLIRASGDQREDLAARLRQALDGTAAVVDQSHGRSVFELSGKHAHAVLARLCRLDLHDRAFPLGSSASTIVGHVSCQLYRNEAPVPSFSLIVGSTFA 178          
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Match: UPI000DBE1290 (sarcosine oxidase subunit gamma n=1 Tax=Roseovarius amoyensis TaxID=2211448 RepID=UPI000DBE1290)

HSP 1 Score: 60.8 bits (146), Expect = 1.770e-8
Identity = 54/164 (32.93%), Postives = 73/164 (44.51%), Query Frame = 1
Query:    7 VSEASILRPYLTGILEVSARRGRENALSELLRAMCGFALPAPGR------SEISTLDTA--LWIAPATFLFLAAEARCAEIGAAVPADVAAINDQSAGYEAMMLDMSAGSLPLASLCRLDL--SKFAVGHATRTPLGQIPAVLWRPEHDRYGILVPRTLARTFI 468
            V   ++    L  +  V+  RGR+  LSE L+A  G A P PGR      +  S  D A  +W     FL   A+   A       A  AA++DQS G+    +     +  LA L  +DL  + F  GH  RT L  + A + R   D Y ILV R LA T +
Sbjct:   18 VGRMTLTEVDLGRLTSVAPYRGRDEGLSEALKAAHGIAAPEPGRVTGRVAARASGRDEACAIWFGQRMFLLAGADPDPAL------AQYAALSDQSDGWACARIQGRGATQVLARLTPIDLRPAAFRRGHTARTELQHMAASITRLGEDDYLILVFRALAGTLV 175          
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Match: A0A0C1J2B2_9RHOB (Sarcosine oxidase subunit gamma n=1 Tax=Ruegeria sp. ANG-R TaxID=1577903 RepID=A0A0C1J2B2_9RHOB)

HSP 1 Score: 56.2 bits (134), Expect = 8.020e-7
Identity = 43/158 (27.22%), Postives = 75/158 (47.47%), Query Frame = 1
Query:    1 MRVSEASILRPYLTGILEVSARRGRENALSELLRAMCGFALPAPGRSEISTLDTALWIAPATFLFLAAEARCAEIGAAVPADVAAINDQSAGYEAMMLDMSAGSLPLASLCRLDL--SKFAVGHATRTPLGQIPAVLWRPEHDRYGILVPRTLARTFI 468
            + V   ++       I  +S  +G++ ALS++L+A  G A P+  R+       A+W  PA  + +      A +  AV      + DQS  +  + L+ +     LA +  +DL  S F  GH  RTPL  + A + R   + + I+V R++A+T +
Sbjct:   16 LTVGSVTLSEEEAVTIHSISPLKGKQKALSDVLKAAHGMACPSANRATGKAGARAVWFGPAHAMLIGPVPDVALMEHAV------VVDQSDAWTVVRLEGAGVEDVLARVVPVDLRSSHFKRGHTARTPLFHMTASITRVGENAFQIMVFRSMAKTLV 167          
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Match: A0A2M7ENN0_9RHOB (Sarcosine oxidase subunit gamma n=1 Tax=Rhodobacteraceae bacterium CG17_big_fil_post_rev_8_21_14_2_50_65_11 TaxID=1974083 RepID=A0A2M7ENN0_9RHOB)

HSP 1 Score: 56.2 bits (134), Expect = 8.360e-7
Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 1
Query:   70 GRENALSELLRAMCGFALPAPGRSEISTLDTALWIAPATFLFLAAEARCAEIGAAVPADVA---AINDQSAGYEAMMLDMSAGSLPLASLCRLDLSK--FAVGHATRTPLGQIPAVLWRPEHDRYGILVPRTLARTFI 468
            G+E A S LL ++ G   P P RS       A+W+                +G AV A VA   A+ DQS  +    L        LA L  LDL++  F  GHA R+ LG + AV+ R   + + I+V R++ART +
Sbjct:   39 GQEAAASALLSSLLGMECPHPNRSTGRDGARAVWVGRGQIFV---------VGKAVDASVARHAALTDQSDAWAVFSLQGHGVEDVLARLTPLDLNRAVFKRGHAARSLLGHMSAVILRTGENTFEIMVFRSMARTAV 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16372.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A840XHX9_9PROT6.580e-1236.99Sarcosine oxidase subunit gamma n=3 Tax=Roseomonas... [more]
UPI0018EA9F001.530e-831.25hypothetical protein n=2 Tax=unclassified Bosea Ta... [more]
UPI000DBE12901.770e-832.93sarcosine oxidase subunit gamma n=1 Tax=Roseovariu... [more]
A0A0C1J2B2_9RHOB8.020e-727.22Sarcosine oxidase subunit gamma n=1 Tax=Ruegeria s... [more]
A0A2M7ENN0_9RHOB8.360e-733.33Sarcosine oxidase subunit gamma n=1 Tax=Rhodobacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16372contigP-wetherbeei_contig16372:562..1029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog314232.SKA53_01926
Preferred namesoxGe
PFAMsSoxG
Model size468
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00060,RC00557
KEGG koko:K00305
KEGG ReactionR00610
KEGG Pathwayko00260,ko01100,map00260,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.25e-09
EggNOG OGsCOG4583@1|root,COG4583@2|Bacteria,1RC66@1224|Proteobacteria,2U5RU@28211|Alphaproteobacteria
EC1.5.3.1
DescriptionSarcosine oxidase, gamma subunit
Cds size468
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.798637-CDS-P-wetherbeei_contig16372:561..10291683186084.798637-CDS-P-wetherbeei_contig16372:561..1029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16372 562..1029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16372.1.1prot_P-wetherbeei_contig16372.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16372 562..1029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16372.1.1

>prot_P-wetherbeei_contig16372.1.1 ID=prot_P-wetherbeei_contig16372.1.1|Name=mRNA_P-wetherbeei_contig16372.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MRVSEASILRPYLTGILEVSARRGRENALSELLRAMCGFALPAPGRSEIS
TLDTALWIAPATFLFLAAEARCAEIGAAVPADVAAINDQSAGYEAMMLDM
SAGSLPLASLCRLDLSKFAVGHATRTPLGQIPAVLWRPEHDRYGILVPRT
LARTFI
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mRNA from alignment at P-wetherbeei_contig16372:562..1029+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16372.1.1 ID=mRNA_P-wetherbeei_contig16372.1.1|Name=mRNA_P-wetherbeei_contig16372.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig16372:562..1029+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTGTCCGAGGCTAGTATCCTTCGTCCTTATTTGACCGGAATACT CGAGGTCTCGGCCCGGCGTGGTCGGGAAAATGCGCTTTCCGAACTGCTTC GGGCCATGTGCGGTTTCGCGCTTCCGGCACCAGGTCGCTCCGAGATCTCG ACTCTGGATACCGCGCTTTGGATCGCGCCGGCCACGTTCCTGTTTCTCGC AGCGGAAGCCCGCTGCGCCGAAATCGGTGCGGCAGTTCCGGCGGACGTGG CGGCAATCAACGACCAGTCTGCCGGTTACGAAGCGATGATGCTCGACATG TCGGCCGGATCCCTGCCGCTAGCATCGCTTTGCCGCCTTGACCTTTCCAA ATTCGCGGTGGGGCATGCGACACGCACGCCGCTCGGGCAAATTCCGGCGG TCCTATGGCGCCCGGAGCATGACCGTTACGGAATCCTTGTCCCGCGAACG CTTGCCCGCACGTTCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16372:562..1029+

>mRNA_P-wetherbeei_contig16372.1.1 ID=mRNA_P-wetherbeei_contig16372.1.1|Name=mRNA_P-wetherbeei_contig16372.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig16372:562..1029+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTGTCCGAGGCTAGTATCCTTCGTCCTTATTTGACCGGAATACT
CGAGGTCTCGGCCCGGCGTGGTCGGGAAAATGCGCTTTCCGAACTGCTTC
GGGCCATGTGCGGTTTCGCGCTTCCGGCACCAGGTCGCTCCGAGATCTCG
ACTCTGGATACCGCGCTTTGGATCGCGCCGGCCACGTTCCTGTTTCTCGC
AGCGGAAGCCCGCTGCGCCGAAATCGGTGCGGCAGTTCCGGCGGACGTGG
CGGCAATCAACGACCAGTCTGCCGGTTACGAAGCGATGATGCTCGACATG
TCGGCCGGATCCCTGCCGCTAGCATCGCTTTGCCGCCTTGACCTTTCCAA
ATTCGCGGTGGGGCATGCGACACGCACGCCGCTCGGGCAAATTCCGGCGG
TCCTATGGCGCCCGGAGCATGACCGTTACGGAATCCTTGTCCCGCGAACG
CTTGCCCGCACGTTCATC
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