mRNA_P-wetherbeei_contig16355.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16355.1.1
Unique NamemRNA_P-wetherbeei_contig16355.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16355.1.1 vs. uniprot
Match: A0A835Z6D6_9STRA (Deoxyribodipyrimidine photo-lyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D6_9STRA)

HSP 1 Score: 194 bits (493), Expect = 4.650e-57
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 VQEGKMHGFMRMYWAKKILEWTASPAEALRIANRLNDRYELDGRDPNGYTGVAWSIMGIHDMGWAERAIFGKIRYMNYAGCSRKFDIANYVARYKPAAQNCIVAGGTIARPKK 339
            VQEGKMHGF+RMYWAKKILEWT SPAEAL  A  LNDRYELDGRDPNGY G+AWSIMGIHDMGW ER IFGKIRYMNYAGC RKF++A++VARY  A  NC  AGG  A+PKK
Sbjct:  398 VQEGKMHGFLRMYWAKKILEWTPSPAEALATAIYLNDRYELDGRDPNGYVGIAWSIMGIHDMGWTERPIFGKIRYMNYAGCMRKFNVASFVARYPAAVANCKAAGGEPAKPKK 510
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BLAST of mRNA_P-wetherbeei_contig16355.1.1 vs. uniprot
Match: A0A7S2SIW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SIW7_9STRA)

HSP 1 Score: 180 bits (456), Expect = 7.560e-53
Identity = 82/109 (75.23%), Postives = 90/109 (82.57%), Query Frame = 1 
Query:    1 VQEGKMHGFMRMYWAKKILEWTASPAEALRIANRLNDRYELDGRDPNGYTGVAWSIMGIHDMGWAERAIFGKIRYMNYAGCSRKFDIANYVARYKPAAQNCIVAGGTIA 327
            VQ+G MHGF+RMYWAKKILEWTASP  ALR     NDRY LDG DPNG+ GVAWS+MGIHDMGW ERAIFGKIR+MNYAGC RKF IA +VARY PAA+N + AGG IA
Sbjct:  264 VQDGTMHGFLRMYWAKKILEWTASPELALRTGLYFNDRYALDGNDPNGFVGVAWSVMGIHDMGWKERAIFGKIRFMNYAGCKRKFKIAPFVARYPPAAKNALKAGGVIA 372
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BLAST of mRNA_P-wetherbeei_contig16355.1.1 vs. uniprot
Match: A0A7S1RYE5_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RYE5_ALECA)

HSP 1 Score: 174 bits (440), Expect = 1.090e-52
Identity = 82/120 (68.33%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:    1 VQEGKMHGFMRMYWAKKILEWTASPAEALRIANRLNDRYELDGRDPNGYTGVAWSIMGIHDMGWAERAIFGKIRYMNYAGCSRKFDIANYVARYKPAAQNCIVAGGTIARP--KKTSNKA 354
            V+EGKMHGF+RMYWAKKILEW+A P EAL IA  LND+Y LDGRDPNGY G  WSI GIHDMGW ER IFGKIR+MNYAGC RKF I  +VARY PAA++ +  GG    P  KK + KA
Sbjct:   78 VKEGKMHGFLRMYWAKKILEWSAKPEEALSIAIWLNDKYNLDGRDPNGYVGCMWSICGIHDMGWTERPIFGKIRFMNYAGCKRKFKIPEFVARYPPAAEHAVALGGESPAPSAKKRAKKA 197
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BLAST of mRNA_P-wetherbeei_contig16355.1.1 vs. uniprot
Match: A0A6P9B0F1_PANGU (deoxyribodipyrimidine photo-lyase-like n=3 Tax=Colubroidea TaxID=34989 RepID=A0A6P9B0F1_PANGU)

HSP 1 Score: 168 bits (426), Expect = 7.440e-52
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 VQEGKMHGFMRMYWAKKILEWTASPAEALRIANRLNDRYELDGRDPNGYTGVAWSIMGIHDMGWAERAIFGKIRYMNYAGCSRKFDIANYVARYKP 288
            V+EGKMHGF+RMYWAKKILEWT SP EAL+ +  LNDRYELDGRDPNGY G  WSI GIHD GWAERA+FGKIRYMNYAGC RKFD+A +  +Y P
Sbjct:    2 VREGKMHGFLRMYWAKKILEWTRSPEEALQFSIYLNDRYELDGRDPNGYVGCMWSICGIHDQGWAERAVFGKIRYMNYAGCKRKFDVAQFERKYSP 97
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BLAST of mRNA_P-wetherbeei_contig16355.1.1 vs. uniprot
Match: A0A2D4F5F1_MICCO (Uncharacterized protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4F5F1_MICCO)

HSP 1 Score: 170 bits (430), Expect = 2.200e-51
Identity = 75/96 (78.12%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 VQEGKMHGFMRMYWAKKILEWTASPAEALRIANRLNDRYELDGRDPNGYTGVAWSIMGIHDMGWAERAIFGKIRYMNYAGCSRKFDIANYVARYKP 288
            V EGKMHGF+RMYWAKKILEWT SP EALR +  LNDRYELDGRDPNGY G  WSI GIHD GWAERAIFGKIRYMNYAGC RKFD+A +  +Y P
Sbjct:   81 VHEGKMHGFLRMYWAKKILEWTRSPEEALRFSIYLNDRYELDGRDPNGYVGCMWSICGIHDQGWAERAIFGKIRYMNYAGCKRKFDVAQFERKYSP 176
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BLAST of mRNA_P-wetherbeei_contig16355.1.1 vs. uniprot
Match: A0A7S2CNB1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNB1_9STRA)

HSP 1 Score: 172 bits (435), Expect = 3.960e-51
Identity = 77/111 (69.37%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:    7 EGKMHGFMRMYWAKKILEWTASPAEALRIANRLNDRYELDGRDPNGYTGVAWSIMGIHDMGWAERAIFGKIRYMNYAGCSRKFDIANYVARYKPAAQNCIVAGGTIARPKK 339
            E K+HGF+RMYWAKKILEWT +PAEALRIA   ND+Y +DGRDPNGY G  WSI GIHDMGW ER IFGKIR+MNY GC RKF +  +V++Y PA  NCI AGGT A  KK
Sbjct:  134 EAKLHGFLRMYWAKKILEWTPNPAEALRIAILFNDKYAIDGRDPNGYVGCMWSICGIHDMGWTERPIFGKIRFMNYNGCMRKFGVHEFVSKYDPARSNCISAGGTPAPEKK 244
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BLAST of mRNA_P-wetherbeei_contig16355.1.1 vs. uniprot
Match: M7BI87_CHEMY (Deoxyribodipyrimidine photo-lyase n=1 Tax=Chelonia mydas TaxID=8469 RepID=M7BI87_CHEMY)

HSP 1 Score: 169 bits (427), Expect = 3.930e-50
Identity = 74/96 (77.08%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    1 VQEGKMHGFMRMYWAKKILEWTASPAEALRIANRLNDRYELDGRDPNGYTGVAWSIMGIHDMGWAERAIFGKIRYMNYAGCSRKFDIANYVARYKP 288
            V EGKMHGF+RMYWAKKILEWT SP EAL+ A  LNDRYELDGRDPNGY G  WSI GIHD GWAERA+FGKIRYMNYAGC RKFD+  +  RY P
Sbjct:  142 VHEGKMHGFLRMYWAKKILEWTRSPEEALKFAIYLNDRYELDGRDPNGYVGCMWSICGIHDQGWAERAVFGKIRYMNYAGCKRKFDVGQFERRYDP 237
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BLAST of mRNA_P-wetherbeei_contig16355.1.1 vs. uniprot
Match: A0A224XXV6_9HEMI (Putative deoxyribodipyrimidine photolyase/cryptochrome (Fragment) n=2 Tax=Triatominae TaxID=70999 RepID=A0A224XXV6_9HEMI)

HSP 1 Score: 166 bits (420), Expect = 7.490e-50
Identity = 74/94 (78.72%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:    1 VQEGKMHGFMRMYWAKKILEWTASPAEALRIANRLNDRYELDGRDPNGYTGVAWSIMGIHDMGWAERAIFGKIRYMNYAGCSRKFDIANYVARY 282
            V+EGKMHGF+RMYWAKKILEWT+SP EALRIA  LNDRY LDGRDPNG+ G  WSI GIHD GW ER IFGKIRYMNY GC RKFD+  YVARY
Sbjct:   79 VKEGKMHGFLRMYWAKKILEWTSSPEEALRIALYLNDRYSLDGRDPNGFVGCMWSICGIHDQGWREREIFGKIRYMNYEGCKRKFDVPAYVARY 172
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BLAST of mRNA_P-wetherbeei_contig16355.1.1 vs. uniprot
Match: A0A7S1V6P4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6P4_9STRA)

HSP 1 Score: 166 bits (421), Expect = 8.880e-50
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    1 VQEGKMHGFMRMYWAKKILEWTASPAEALRIANRLNDRYELDGRDPNGYTGVAWSIMGIHDMGWAERAIFGKIRYMNYAGCSRKFDIANYVARYKPAAQNCIVA 312
            VQ+GK+HGF+RMYWAKKILEWT SP  ALR A  +ND+Y LDG DPNG+ GV WSIMGIHDMGW ER IFGKIRYMNYAGC RKF +A++V +YK A  N I A
Sbjct:   58 VQDGKLHGFLRMYWAKKILEWTPSPEVALRTAQYMNDQYALDGLDPNGFVGVGWSIMGIHDMGWKERPIFGKIRYMNYAGCKRKFKVADFVNKYKGAQTNAIAA 161
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BLAST of mRNA_P-wetherbeei_contig16355.1.1 vs. uniprot
Match: A0A8K0P5Q8_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P5Q8_LADFU)

HSP 1 Score: 164 bits (414), Expect = 9.650e-50
Identity = 72/93 (77.42%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    4 QEGKMHGFMRMYWAKKILEWTASPAEALRIANRLNDRYELDGRDPNGYTGVAWSIMGIHDMGWAERAIFGKIRYMNYAGCSRKFDIANYVARY 282
            +EGKMHGF+RMYWAKKILEWT SP EAL IA  LNDR+ LDGRDPNG+ G  WSI GIHD GWAERA+FGKIRYMNY GC RKFD+A +VARY
Sbjct:   20 KEGKMHGFLRMYWAKKILEWTESPEEALSIAIYLNDRFSLDGRDPNGFVGCMWSICGIHDQGWAERAVFGKIRYMNYEGCKRKFDVAAFVARY 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16355.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6D6_9STRA4.650e-5778.76Deoxyribodipyrimidine photo-lyase n=1 Tax=Tribonem... [more]
A0A7S2SIW7_9STRA7.560e-5375.23Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1RYE5_ALECA1.090e-5268.33Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6P9B0F1_PANGU7.440e-5276.04deoxyribodipyrimidine photo-lyase-like n=3 Tax=Col... [more]
A0A2D4F5F1_MICCO2.200e-5178.13Uncharacterized protein (Fragment) n=1 Tax=Micruru... [more]
A0A7S2CNB1_9STRA3.960e-5169.37Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
M7BI87_CHEMY3.930e-5077.08Deoxyribodipyrimidine photo-lyase n=1 Tax=Chelonia... [more]
A0A224XXV6_9HEMI7.490e-5078.72Putative deoxyribodipyrimidine photolyase/cryptoch... [more]
A0A7S1V6P4_9STRA8.880e-5071.15Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A8K0P5Q8_LADFU9.650e-5077.42Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16355contigP-wetherbeei_contig16355:2..840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2903.EOD11422
Preferred namephr
PFAMsDNA_photolyase
Model size414
Max annot lvl2759|Eukaryota
KEGG koko:K01669
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000719,GO:0003674,GO:0003824,GO:0003904,GO:0003913,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009987,GO:0016829,GO:0016830,GO:0033554,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051716,GO:0071704,GO:0071949,GO:0090304,GO:0097159,GO:0140097,GO:1901265,GO:1901360,GO:1901363
Exons3
Evalue9.75e-48
EggNOG OGsCOG0415@1|root,KOG0133@2759|Eukaryota
EC4.1.99.3
DescriptionDNA photolyase activity
Cds size399
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.4054716-UTR-P-wetherbeei_contig16355:1..161683186084.4054716-UTR-P-wetherbeei_contig16355:1..16Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16355 2..16 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.4146078-CDS-P-wetherbeei_contig16355:16..361683186084.4146078-CDS-P-wetherbeei_contig16355:16..36Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16355 17..36 +
1683186084.4232018-CDS-P-wetherbeei_contig16355:216..3671683186084.4232018-CDS-P-wetherbeei_contig16355:216..367Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16355 217..367 +
1683186084.4386158-CDS-P-wetherbeei_contig16355:612..8401683186084.4386158-CDS-P-wetherbeei_contig16355:612..840Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16355 613..840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16355.1.1prot_P-wetherbeei_contig16355.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16355 17..840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16355.1.1

>prot_P-wetherbeei_contig16355.1.1 ID=prot_P-wetherbeei_contig16355.1.1|Name=mRNA_P-wetherbeei_contig16355.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
MHGFMRMYWAKKILEWTASPAEALRIANRLNDRYELDGRDPNGYTGVAWS
IMGIHDMGWAERAIFGKIRYMNYAGCSRKFDIANYVARYKPAAQNCIVAG
GTIARPKKTSNKAKAAAAKPTAKPSAKRTTGSS
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mRNA from alignment at P-wetherbeei_contig16355:2..840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16355.1.1 ID=mRNA_P-wetherbeei_contig16355.1.1|Name=mRNA_P-wetherbeei_contig16355.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=839bp|location=Sequence derived from alignment at P-wetherbeei_contig16355:2..840+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCAAGAGGGCAAGATGCACGGCTTCATGCGTATGTGAGTCATCAAGGT
AGCCTGCCGAAGCTGTATTACGGGCGGTGGACGGTTTCGGCCTCCGCTGA
ACTGCGCGTGCACGCGTTCTCTGCATCCATCGCTTAAGAAATCTGTCTGC
ATGCTTTAAGAACCTCGCTGTTGATTTGCCCCTCATTCCCACTTTTCTCG
CCGCCGCAAACGCAGGTACTGGGCGAAGAAGATCCTTGAATGGACCGCGT
CGCCGGCCGAGGCGCTGCGCATCGCCAACCGCCTCAACGACCGCTATGAG
CTCGACGGGCGCGACCCCAACGGCTACACGGGCGTTGCCTGGTCCATCAT
GGGCATTCATGATATGGTGCGTCCGTTTGGGGCGATGGCAGGCGAGAAGG
AGAACAGGAGGGGTGGCGCCGGATTGTGCTGGGTGGCAATGGTGGTCGTT
CTCGTCTCATCTGACCGGCGTCTTAGTTTGCCTTGCTTGTTGAACCTCAT
GCGTCGCTCCCCTCATGCATTGCTGCCAGCGCTGGAAGCGAGCCTTTGCT
CCTCTCAACTCGCGCTTTCTCTTATCTTTGTGTGCAATCTCCCATGCTGC
TGGATTGGTAGGGGTGGGCGGAGCGGGCCATCTTCGGCAAGATCCGCTAT
ATGAACTACGCCGGCTGCTCCCGCAAGTTTGACATTGCCAACTACGTCGC
GCGCTACAAGCCCGCCGCCCAGAACTGCATCGTCGCGGGGGGCACAATTG
CCCGGCCAAAAAAGACATCCAACAAGGCCAAAGCGGCGGCGGCCAAGCCG
ACGGCCAAACCGAGTGCGAAGAGGACAACCGGCAGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16355:2..840+

>mRNA_P-wetherbeei_contig16355.1.1 ID=mRNA_P-wetherbeei_contig16355.1.1|Name=mRNA_P-wetherbeei_contig16355.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig16355:2..840+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGCTTCATGCGTATGTACTGGGCGAAGAAGATCCTTGAATGGAC
CGCGTCGCCGGCCGAGGCGCTGCGCATCGCCAACCGCCTCAACGACCGCT
ATGAGCTCGACGGGCGCGACCCCAACGGCTACACGGGCGTTGCCTGGTCC
ATCATGGGCATTCATGATATGGGGTGGGCGGAGCGGGCCATCTTCGGCAA
GATCCGCTATATGAACTACGCCGGCTGCTCCCGCAAGTTTGACATTGCCA
ACTACGTCGCGCGCTACAAGCCCGCCGCCCAGAACTGCATCGTCGCGGGG
GGCACAATTGCCCGGCCAAAAAAGACATCCAACAAGGCCAAAGCGGCGGC
GGCCAAGCCGACGGCCAAACCGAGTGCGAAGAGGACAACCGGCAGCAGC
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