mRNA_P-wetherbeei_contig16354.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16354.1.1
Unique NamemRNA_P-wetherbeei_contig16354.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16354.1.1 vs. uniprot
Match: A0A836CKN4_9STRA (Peptide chain release factor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN4_9STRA)

HSP 1 Score: 569 bits (1467), Expect = 4.660e-202
Identity = 285/368 (77.45%), Postives = 334/368 (90.76%), Query Frame = 1
Query:    1 MALDEFVERQLDGIKRSYNELSERLGDPDVLSDSKKLMQVTKDRSKIERVVNTYDEYQLVASDLDGARELFAESGSDTEMREMAREEVRELETRLEDMEADLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLSVYRKYATECGWELRIIDEALADMGGYKAVVAEVRGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVQIRPEDIEMHAARAGGAGGQNVNKVESAIDLFHKPTGIRIFCQQERSQLRNKETALALLRSRLYEMELEKQQSAVAGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINKNFPLASFMSGDIDEMISTCIIADQQEAMENMARRQQQPV 1104
            MALD+FV RQL GI+RSYNE++ERLGDPDVL+DSKKLM+++KDR+K+E VV  + EY+   + L GA E+F ES  D E+REMAREE+R+LE R+E ME DLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLL+VYRKYATE GW LR+++EA ADMGG+K++VAEVRG++VYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTV+I P DI+MH ARAGG+GGQNVNKVE+A+DLFHKPTGIRIFCQQERSQL+NKE A+++LRSRLYE+ELEKQQ+AV+GNRRAQVGSGARSEKIRTYNWKDSRCSDHRIN+N+PL +F+SG ID+MI+ CI+ DQQE ++ MAR+Q Q V
Sbjct:    1 MALDDFVVRQLGGIERSYNEMTERLGDPDVLADSKKLMEISKDRAKMEGVVTMFGEYKDALAQLGGATEMFQESAGDAELREMAREEMRDLEARMERMEVDLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLNVYRKYATEMGWTLRVVEEAAADMGGFKSIVAEVRGDAVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVRIDPGDIDMHTARAGGSGGQNVNKVETAVDLFHKPTGIRIFCQQERSQLKNKELAMSILRSRLYEIELEKQQAAVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINRNWPLDTFLSGTIDDMIAACIVMDQQEQLQEMARKQAQGV 368          
BLAST of mRNA_P-wetherbeei_contig16354.1.1 vs. uniprot
Match: A0A6H5KZD5_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZD5_9PHAE)

HSP 1 Score: 508 bits (1308), Expect = 1.220e-176
Identity = 253/370 (68.38%), Postives = 313/370 (84.59%), Query Frame = 1
Query:    1 MALDEFVERQLDGIKRSYNELSERLGDPDVLSDSKKLMQVTKDRSKIERVVNTYDEYQLVASDLDGARELFAES---GSDTEMREMAREEVRELETRLEDMEADLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLSVYRKYATECGWELRIIDEALADMGGYKAVVAEVRGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVQIRPEDIEMHAARAGGAGGQNVNKVESAIDLFHKPTGIRIFCQQERSQLRNKETALALLRSRLYEMELEKQQSAVAGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINKNFPLASFMSGD-IDEMISTCIIADQQEAMENMARRQQQ 1098
            MALD+FV  QL GI R++NEL+ERLGDPDVL++ K +M+V+++R+ +E +VN Y EY   A DL+GA+E+F ES   G D EM+EMAREE+R+LE  +E +E  +KL+LLPTDPND RNVMLEIRAGTGGDEAA+WA +LL VY+KYA E GW L++I+ A+ + GG++ V+AEV G+ VYSKLKYEAGVHRVQRVPATE+QGRVHTSTATVA+MPEVDEV V IRPEDIE+  AR+GG+GGQNVNKVESA+DLFHKPTGIRIFC QERSQL+N+E A+ LLRSR+Y++ELEKQQ+  +GNR+AQVGSG+RSEKIRTYNWKDSRCSDHRI KNFPL +F+SG  +D+MI  CI+ DQQE M  +A +Q+Q
Sbjct:   70 MALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVSGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHKPTGIRIFCTQERSQLKNREVAMKLLRSRVYDIELEKQQAETSGNRKAQVGSGSRSEKIRTYNWKDSRCSDHRIGKNFPLNNFLSGSGLDDMIGACILLDQQELMAELAAKQRQ 439          
BLAST of mRNA_P-wetherbeei_contig16354.1.1 vs. uniprot
Match: A0A6S9M8F3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M8F3_HETAK)

HSP 1 Score: 490 bits (1262), Expect = 3.860e-170
Identity = 243/364 (66.76%), Postives = 306/364 (84.07%), Query Frame = 1
Query:    1 MALDEFVERQLDGIKRSYNELSERLGDPDVLSDSKKLMQVTKDRSKIERVVNTYDEYQLVASDLDGARELFAESGSDTEMREMAREEVRELETRLEDMEADLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLSVYRKYATECGWELRIIDEALADMGGYKAVVAEVRGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVQIRPEDIEMHAARAGGAGGQNVNKVESAIDLFHKPTGIRIFCQQERSQLRNKETALALLRSRLYEMELEKQQSAVAGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINKNFPLASFMSGDIDEMISTCIIADQQEAMENMARRQ 1092
            MA+  +++ +L GI++++N+L+  L DPDVL+DSK+LM+++K+RSK+E +V  + EY+   +DL GA+ELF+ES  D EMREMAR+E+ E ET +++++  LK++LLPTDPNDERN MLEIRAGTGGDEA IWAGDL+ VY+KYA   GW   +I+E+ ADMGG K+   EVRGE+VYSKLKYEAGVHRVQRVPATE+QGRVHTSTATVA+MPEVDEVTV+I P+DIE+  AR+GGAGGQNVNKVE+A DLFHKPTGIRIFC QERSQL+NKE A+ LLR+RLYEMELEKQ+S V+G RRAQVG+GARSEKIRTYNWKDSRCSDHRI +NFPL  F+ G +D++I   I++DQQ+ ++ MA  Q
Sbjct:   49 MAIPSYMQDKLKGIEQTFNQLTNSLADPDVLNDSKQLMKISKERSKLEEIVEAFQEYKSREADLTGAKELFSESAGDPEMREMARDEIDECETVMDELQEKLKILLLPTDPNDERNCMLEIRAGTGGDEAGIWAGDLVEVYKKYAQTQGWACTLIEESAADMGGVKSCTLEVRGEAVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVTVKIDPKDIELTTARSGGAGGQNVNKVETAADLFHKPTGIRIFCTQERSQLKNKEMAMNLLRARLYEMELEKQRSEVSGARRAQVGTGARSEKIRTYNWKDSRCSDHRIGQNFPLQMFLDGKVDDIIQALIVSDQQDQLKEMAEEQ 412          
BLAST of mRNA_P-wetherbeei_contig16354.1.1 vs. uniprot
Match: A0A140ECJ7_9STRA (Plastid peptide chain release factor 1 n=1 Tax=Trachydiscus minutus TaxID=1032745 RepID=A0A140ECJ7_9STRA)

HSP 1 Score: 461 bits (1186), Expect = 1.960e-158
Identity = 225/368 (61.14%), Postives = 298/368 (80.98%), Query Frame = 1
Query:    1 MALDEFVERQLDGIKRSYNELSERLGDPDVLSDSKKLMQVTKDRSKIERVVNTYDEYQLVASDLDGARELFAESGSDTEMREMAREEVRELETRLEDMEADLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLSVYRKYATECGWELRIIDEALADMGGYKAVVAEVRGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVQIRPEDIEMHAARAGGAGGQNVNKVESAIDLFHKPTGIRIFCQQERSQLRNKETALALLRSRLYEMELEKQQSAVAGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINKNFPLASFMSGDIDEMISTCIIADQQEAMENMARRQQQPV 1104
            MALD+FV  +LDGI R++ E++ERL DPDV+++     ++ ++R+KIE VV  Y+ ++ +  +L+ A+ L  ESG D +MREMAR EV++L++  E++E  L +++LP DP D++NVMLEIRAGTGG EA ++AGDL+ VY ++    GW++R+IDE+  D GGYK  V E++G+ VYSK+K+EAGVHRVQRVPATE+QGRVHTSTATVAVMPEVDEVTV+I P++IEMH AR+GG+GGQNVNKVE+A+DL HKPTGIRIFC QERSQL+NKE A+ LLRS+LYEMELEKQQ  + G RR+Q+GSG RSEKIRTYNWKDSRC+DHR+ +NF L  F+SG+IDEMI+ C++ +Q E +E M++ Q Q V
Sbjct:   60 MALDDFVVNKLDGILRAFTEMTERLADPDVINNPNLSREINQERTKIEEVVGAYEHWRKLGQELEDAKNLLMESGDDPDMREMARLEVKQLDSSREELEDRLMILMLPQDPMDDKNVMLEIRAGTGGSEAGLFAGDLIDVYTRFGQTQGWKVRMIDESRNDEGGYKTAVLEIQGDKVYSKMKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVTVKIDPKEIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMTLLRSKLYEMELEKQQEQITGQRRSQIGSGGRSEKIRTYNWKDSRCTDHRLGQNFNLDKFLSGEIDEMINQCLLMEQNEKLEQMSKEQLQKV 427          
BLAST of mRNA_P-wetherbeei_contig16354.1.1 vs. uniprot
Match: A0A140ECK3_9STRA (Plastid peptide chain release factor 1 n=1 Tax=Monodopsis sp. MarTras21 TaxID=1745953 RepID=A0A140ECK3_9STRA)

HSP 1 Score: 460 bits (1184), Expect = 2.340e-158
Identity = 224/360 (62.22%), Postives = 299/360 (83.06%), Query Frame = 1
Query:    1 MALDEFVERQLDGIKRSYNELSERLGDPDVLSDSKKLMQVTKDRSKIERVVNTYDEYQLVASDLDGARELFAESGSDTEMREMAREEVRELETRLEDMEADLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLSVYRKYATECGWELRIIDEALADMGGYKAVVAEVRGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVQIRPEDIEMHAARAGGAGGQNVNKVESAIDLFHKPTGIRIFCQQERSQLRNKETALALLRSRLYEMELEKQQSAVAGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINKNFPLASFMSGDIDEMISTCIIADQQEAMENM 1080
            MALD FV+ +LD IKR+Y+EL+ERLGDPDV+++   LMQV ++R KIE VV +Y ++Q +  D+ GA++LF E+G+D E++EMAR E+++LE +  ++EA L +++LP DP D+RNVMLEIRAGTGG EA ++AG+L+ VY +YAT  GW +R+I+++  D GGYK  V E++G+ VYSKLK+EAGVHRVQRVPATE+QGRVHTSTATVA+MPEVD+V VQI  +DIEMH AR+GG+GGQNVNKVE+A+DL HKPTGIRIFC QERSQL+NKE A+ LLRSRL+EME EKQ+ ++AG RR+Q+GSG RSEKIRTYNWKDSRC+DHR+ +NFPL +F+ G+++ + + C++ +QQE +  M
Sbjct:   46 MALDPFVQSKLDSIKRTYHELTERLGDPDVIANPNSLMQVNQERMKIEEVVLSYQKWQKLGEDMVGAKQLFNEAGNDVELKEMARAEIKDLEAQQGEIEARLVVLMLPQDPLDDRNVMLEIRAGTGGSEAGLFAGNLVDVYTRYATAQGWRVRVIEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDDVQVQIDAKDIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMQLLRSRLFEMEQEKQRESIAGQRRSQIGSGGRSEKIRTYNWKDSRCTDHRLGQNFPLQTFLDGNLEGITNQCLLQEQQEKLAEM 405          
BLAST of mRNA_P-wetherbeei_contig16354.1.1 vs. uniprot
Match: A0A140ECJ9_9STRA (Plastid peptide chain release factor 1 n=1 Tax=Vischeria sp. CAUP Q 202 TaxID=1805947 RepID=A0A140ECJ9_9STRA)

HSP 1 Score: 460 bits (1183), Expect = 2.350e-158
Identity = 230/359 (64.07%), Postives = 295/359 (82.17%), Query Frame = 1
Query:    1 MALDEFVERQLDGIKRSYNELSERLGDPDVLSDSKKLMQVTKDRSKIERVVNTYDEYQLVASDLDGARELFAESGS-DTEMREMAREEVRELETRLEDMEADLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLSVYRKYATECGWELRIIDEALADMGGYKAVVAEVRGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVQIRPEDIEMHAARAGGAGGQNVNKVESAIDLFHKPTGIRIFCQQERSQLRNKETALALLRSRLYEMELEKQQSAVAGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINKNFPLASFMSGDIDEMISTCIIADQQEAME 1074
            MAL+ FV+ +LDGI+RSY EL+ERLGDPDV+   + LM V ++RSKIE VV  Y +Y+    DL GA++LF E+G  D E+REMAR+E++ LE + +D+E  L +++LP DP D+RNVMLEIRAGTGGDEA+++AGDL+ VY +YA   GW  R++ EA +D GGYK  V EV G+ VYSKLK+EAGVHRVQRVPATE+QGRVHTSTATVAVMPEVDEV V+I P+DIEMH AR+GG+GGQNVNKVE+A+DL HKPTGIRIFC QERSQL+NKE A+ +LRS+LYEME+EKQ + V G RR+Q+GSGARSEKIRTYNWKDSRC+DHR+ +NFPL + + G ++++ + C++++QQE +E
Sbjct:   37 MALEPFVKTKLDGIERSYKELTERLGDPDVIKSPQTLMHVNQERSKIEGVVVAYQQYKKNDEDLLGAKQLFNEAGQEDPELREMARDEIKGLEVQQDDLEKQLMVLMLPKDPMDDRNVMLEIRAGTGGDEASLFAGDLVDVYSRYAQIQGWRSRMVSEARSDDGGYKMAVLEVHGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVRIDPKDIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMQILRSKLYEMEVEKQMNEVTGQRRSQIGSGARSEKIRTYNWKDSRCTDHRLGQNFPLQTVLEGKLEDITNQCLLSEQQEKLE 395          
BLAST of mRNA_P-wetherbeei_contig16354.1.1 vs. uniprot
Match: A0A4D9DHG8_9STRA (RF_PROK_I domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHG8_9STRA)

HSP 1 Score: 455 bits (1171), Expect = 4.260e-157
Identity = 221/360 (61.39%), Postives = 295/360 (81.94%), Query Frame = 1
Query:    1 MALDEFVERQLDGIKRSYNELSERLGDPDVLSDSKKLMQVTKDRSKIERVVNTYDEYQLVASDLDGARELFAESGSDTEMREMAREEVRELETRLEDMEADLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLSVYRKYATECGWELRIIDEALADMGGYKAVVAEVRGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVQIRPEDIEMHAARAGGAGGQNVNKVESAIDLFHKPTGIRIFCQQERSQLRNKETALALLRSRLYEMELEKQQSAVAGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINKNFPLASFMSGDIDEMISTCIIADQQEAMENM 1080
            M LD FV+ +L+   R+Y EL+ERLGDPDV+++   LMQV ++R  IE VV +Y E+Q +A+D+ GA++LF E+  D EM+EMAR E+++LE R ED+E  L +++LP+DP D+RNVMLEIRAGTGG EA ++AGDL+ VY++Y    GW +R+++++  D GGYK  V E++G+ VYSKLK+EAGVHRVQRVPATE+QGRVHTSTATVAVMPEVDEV V+I P+DI +  AR+GG+GGQNVNKVE+A+DL HKPTGIRIFC QERSQL+NKE A+++LRSRL+++E EKQ+ AVAG RR+Q+GSG+RSEKIRTYNWKDSRC+DHR+  NFPL  F+ G+++E+ + C++ +QQE +E M
Sbjct:    1 MTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEGRQEDIEEQLVVLMLPSDPLDDRNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCVLLEQQEKLEAM 360          
BLAST of mRNA_P-wetherbeei_contig16354.1.1 vs. uniprot
Match: A0A7S3P9F9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P9F9_9STRA)

HSP 1 Score: 451 bits (1161), Expect = 6.760e-155
Identity = 227/362 (62.71%), Postives = 286/362 (79.01%), Query Frame = 1
Query:    1 MALDEFVERQLDGIKRSYNELSERLGDPDVLSDSKKLMQVTKDRSKIERVVNTYDEYQLVASDLDGARELFAESGSDTEMREMAREEVRELETRLEDMEADLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLSVYRKYATECGWELRIIDEALADMGGYKAVVAEVRGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVQIRPEDIEMHAARAGGAGGQNVNKVESAIDLFHKPTGIRIFCQQERSQLRNKETALALLRSRLYEMELEKQQSAVAGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINKNFPLASFMSGDIDEMISTCIIADQQEAMENMAR 1086
            MALDE +  +L+ I+RSYN L+ERLGDPDV+SDS  L +V  DRS+ E VV  Y+EY  +  DL GARELF E+G D +MREMAREE++ELE +LE++E  +K+++LP DPND RNVMLEIRAGTGG EA+I+AGDLL VYRKY +  GW+  +IDE+  D GGYK VV E++G+ VYSKLK+EAGVHRVQRVPATESQGRVHTSTATVA+MPE D+V V+I P+DIE+   R+GGAGGQNVNKVE+A+DL HKPTGIRI C QERSQL+NKE A+ +L S+LY+ME EK++      R +Q+G+G RSEKIRTYNWKDSRCSDHR+ +N+PL  F+ GD+  M    I  DQ+E ++ + +
Sbjct:   44 MALDEAMMSRLENIRRSYNALTERLGDPDVISDSNLLQKVMSDRSQSEEVVLAYEEYSQMLEDLAGARELFQEAGDDADMREMAREEMKELEPKLEELEERMKILMLPKDPNDNRNVMLEIRAGTGGSEASIFAGDLLDVYRKYISSQGWQSNLIDESTGDDGGYKNVVLEIKGDMVYSKLKWEAGVHRVQRVPATESQGRVHTSTATVAIMPECDDVDVKIDPKDIELSTMRSGGAGGQNVNKVETAVDLLHKPTGIRIKCTQERSQLKNKELAMKMLMSKLYDMENEKREMEERSRRGSQIGTGGRSEKIRTYNWKDSRCSDHRLGQNYPLQQFLGGDLGPMHEAMIAKDQEERLKELTQ 405          
BLAST of mRNA_P-wetherbeei_contig16354.1.1 vs. uniprot
Match: A0A1E7FE44_9STRA (Peptide chain release factor 1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE44_9STRA)

HSP 1 Score: 446 bits (1147), Expect = 1.640e-153
Identity = 220/352 (62.50%), Postives = 286/352 (81.25%), Query Frame = 1
Query:   28 QLDGIKRSYNELSERLGDPDVLSDSKKLMQVTKDRSKIERVVNTYDEYQLVASDLDGARELFAESGSDTEMREMAREEVRELETRLEDMEADLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLSVYRKYATECGWELRIIDEALADMGGYKAVVAEVRGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVQIRPEDIEMHAARAGGAGGQNVNKVESAIDLFHKPTGIRIFCQQERSQLRNKETALALLRSRLYEMELEKQQSAVAGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINKNFPLASFMSGDIDEMISTCIIADQQEAMENMA 1083
            +LDG+KRSYN ++ERLGDPDVL DSK L +V  DR+  E+VV  YDEY  +  +LDGA ELF E+G D E+REMAR E++E+E +L+ +E ++K++LLP DPNDERNVM+EIRAGTGG EA+I+ GDLL VYRKY +  GW+++IIDE+  + GG+K +V E++G+SVYSK+K+EAGVHRVQRVPATES GRVHTSTATVA+MPE DEV V+I  +DI+M   R+GGAGGQNVNKVE+A+DL HKPTGIRI C QERSQ++NKE A+ +L ++LY++ELEK+       R  QVG+G RSEKIRTYNWKDSRCSDHRI +N+PL+ F++GDID +IS  I+ DQ+E ++ ++
Sbjct:    4 RLDGMKRSYNAMTERLGDPDVLEDSKLLQKVMSDRASSEQVVTAYDEYCGLQEELDGATELFQEAGDDAELREMARAEIKEIEPQLDRLEEEMKILLLPKDPNDERNVMVEIRAGTGGSEASIFVGDLLDVYRKYISTQGWQMKIIDESSGESGGFKNIVMEIKGDSVYSKMKWEAGVHRVQRVPATESAGRVHTSTATVAIMPECDEVDVKIDKKDIDMSTMRSGGAGGQNVNKVETAVDLLHKPTGIRIKCTQERSQIKNKELAMKMLMAKLYDIELEKRDMEDRERRGVQVGTGGRSEKIRTYNWKDSRCSDHRIQQNYPLSQFLNGDIDPIISAMILKDQEEKLQALS 355          
BLAST of mRNA_P-wetherbeei_contig16354.1.1 vs. uniprot
Match: A0A448Z911_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z911_9STRA)

HSP 1 Score: 444 bits (1141), Expect = 6.600e-152
Identity = 226/362 (62.43%), Postives = 282/362 (77.90%), Query Frame = 1
Query:    4 ALDEFVERQLDGIKRSYNELSERLGDPDVLSDSKKLMQVTKDRSKIERVVNTYDEYQLVASDLDGARELFAESGSDTEMREMAREEVRELETRLEDMEADLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLSVYRKYATECGWELRIIDEALADMGGYKAVVAEVRGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVQIRPEDIEMHAARAGGAGGQNVNKVESAIDLFHKPTGIRIFCQQERSQLRNKETALALLRSRLYEMELEKQQSAVAGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINKNFPLASFMSGDIDEMISTCIIADQQEAMENMARR 1089
            ALDE +  +L+ IKRSYN L+ERLGDPDVL DSK L +V  DR+  E VV  YDEY  +  +L+GA+ELF ++G D EM+EMAR E++E+E +LE +E  +K++LLP DPND+RNVMLEIRAGTGG EA+I+ GDLL VYRKY +  GW   IIDE+  D GGYK +V EV+G+ VYSKLK+EAGVHRVQRVPATES GRVHTSTATVA+MPE DEV + I  +DIE+   R+GGAGGQNVNKVE+A+DL HKPTGIRI C QERSQL+NKE A+ +L S+LY++E EK+       R +QVG+G RSEKIRTYNWKDSRCSDHRI +N+PL  F+ GDID +I   I+ DQ+E ++ +A +
Sbjct:   43 ALDEGMMGRLENIKRSYNALTERLGDPDVLGDSKLLQKVMSDRASSEEVVLAYDEYTGLLEELEGAKELFQDAGDDPEMKEMARAEMKEIEPKLEPIEDKIKILLLPKDPNDDRNVMLEIRAGTGGSEASIFVGDLLDVYRKYISSQGWSANIIDESTGDDGGYKNIVMEVKGDKVYSKLKWEAGVHRVQRVPATESAGRVHTSTATVAIMPECDEVDINIDKKDIEISTMRSGGAGGQNVNKVETAVDLLHKPTGIRIKCTQERSQLKNKELAMKMLMSKLYDLENEKRDMEERARRGSQVGTGGRSEKIRTYNWKDSRCSDHRIQQNYPLNQFLGGDIDPIIGAMIMKDQEEKLKELAEQ 404          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16354.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKN4_9STRA4.660e-20277.45Peptide chain release factor 1 n=1 Tax=Tribonema m... [more]
A0A6H5KZD5_9PHAE1.220e-17668.38RF_PROK_I domain-containing protein n=2 Tax=Ectoca... [more]
A0A6S9M8F3_HETAK3.860e-17066.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A140ECJ7_9STRA1.960e-15861.14Plastid peptide chain release factor 1 n=1 Tax=Tra... [more]
A0A140ECK3_9STRA2.340e-15862.22Plastid peptide chain release factor 1 n=1 Tax=Mon... [more]
A0A140ECJ9_9STRA2.350e-15864.07Plastid peptide chain release factor 1 n=1 Tax=Vis... [more]
A0A4D9DHG8_9STRA4.260e-15761.39RF_PROK_I domain-containing protein n=3 Tax=Monodo... [more]
A0A7S3P9F9_9STRA6.760e-15562.71Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1E7FE44_9STRA1.640e-15362.50Peptide chain release factor 1 n=1 Tax=Fragilariop... [more]
A0A448Z911_9STRA6.600e-15262.43RF_PROK_I domain-containing protein n=1 Tax=Pseudo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16354contigP-wetherbeei_contig16354:358..1525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FY16
Preferred nameMRF1
PFAMsPCRF,RF-1
Model size1168
Max annot lvl2759|Eukaryota
KEGG koko:K02835
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009658,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016149,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032543,GO:0032544,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0061024,GO:0070126,GO:0071704,GO:0071840,GO:0097159,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue2.38e-178
EggNOG OGsCOG0216@1|root,KOG2726@2759|Eukaryota
Ec32 ortholog descriptionpeptide chain release factor 1
Ec32 orthologEc-08_004700.1
Descriptiontranslation release factor activity
Cds size1110
COG categoryJ
BRITEko00000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.3731935-CDS-P-wetherbeei_contig16354:357..14671683186084.3731935-CDS-P-wetherbeei_contig16354:357..1467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16354 358..1467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.3822284-UTR-P-wetherbeei_contig16354:1467..15251683186084.3822284-UTR-P-wetherbeei_contig16354:1467..1525Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16354 1468..1525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16354.1.1prot_P-wetherbeei_contig16354.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16354 358..1467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16354.1.1

>prot_P-wetherbeei_contig16354.1.1 ID=prot_P-wetherbeei_contig16354.1.1|Name=mRNA_P-wetherbeei_contig16354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=370bp
MALDEFVERQLDGIKRSYNELSERLGDPDVLSDSKKLMQVTKDRSKIERV
VNTYDEYQLVASDLDGARELFAESGSDTEMREMAREEVRELETRLEDMEA
DLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLSVYRKYATECGW
ELRIIDEALADMGGYKAVVAEVRGESVYSKLKYEAGVHRVQRVPATESQG
RVHTSTATVAVMPEVDEVTVQIRPEDIEMHAARAGGAGGQNVNKVESAID
LFHKPTGIRIFCQQERSQLRNKETALALLRSRLYEMELEKQQSAVAGNRR
AQVGSGARSEKIRTYNWKDSRCSDHRINKNFPLASFMSGDIDEMISTCII
ADQQEAMENMARRQQQPVG*
back to top

mRNA from alignment at P-wetherbeei_contig16354:358..1525+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16354.1.1 ID=mRNA_P-wetherbeei_contig16354.1.1|Name=mRNA_P-wetherbeei_contig16354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1168bp|location=Sequence derived from alignment at P-wetherbeei_contig16354:358..1525+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTCTGGACGAGTTTGTGGAACGACAATTAGACGGCATCAAGCGATC GTATAACGAGCTGAGCGAGCGTCTGGGCGACCCGGATGTTTTGTCGGACA GCAAAAAACTGATGCAGGTCACGAAAGACAGGAGTAAGATCGAGCGCGTC GTTAACACGTACGACGAATACCAATTGGTGGCGTCGGACCTGGATGGCGC GCGGGAGCTTTTTGCTGAGTCCGGAAGCGACACCGAGATGCGCGAAATGG CGCGGGAAGAAGTCCGCGAGCTGGAGACTCGGCTGGAGGACATGGAAGCC GACCTCAAGCTCATGCTGCTCCCCACCGACCCGAACGACGAGCGCAACGT CATGCTCGAAATCCGCGCGGGCACCGGTGGCGACGAGGCCGCCATCTGGG CCGGCGACCTGCTCAGCGTCTACCGCAAGTACGCGACGGAGTGCGGGTGG GAGCTGCGCATCATTGACGAGGCGCTCGCCGACATGGGCGGCTACAAGGC GGTCGTCGCTGAAGTCCGCGGCGAGAGCGTCTACAGCAAGCTGAAGTACG AAGCCGGCGTCCACCGCGTGCAGCGTGTCCCGGCGACCGAGTCGCAGGGC CGCGTGCACACATCAACGGCGACGGTCGCCGTCATGCCGGAGGTGGACGA GGTGACCGTCCAGATCCGGCCGGAAGACATCGAAATGCACGCCGCGCGGG CAGGTGGCGCCGGCGGGCAAAATGTCAACAAGGTGGAGAGCGCGATAGAC CTGTTTCACAAGCCGACCGGCATCCGCATCTTCTGCCAGCAGGAGCGGTC GCAGCTGCGCAACAAGGAGACAGCGCTGGCGCTGCTGCGGAGCCGCCTCT ACGAGATGGAGCTGGAAAAGCAGCAGAGCGCGGTGGCGGGCAACCGCCGG GCCCAGGTCGGCTCCGGCGCGCGGAGCGAGAAGATCCGGACGTATAATTG GAAGGACTCGCGGTGCAGCGACCACCGCATCAACAAGAACTTCCCGCTGG CGTCGTTTATGAGCGGCGACATCGACGAGATGATCTCGACGTGCATCATT GCCGACCAGCAGGAAGCAATGGAAAACATGGCGCGGAGGCAGCAGCAGCC CGTCGGGTGATGCGAAAGCGATGACAAATGGCGAAACGCAGCGGGCGAAA CAAACAAACAAACTGAAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16354:358..1525+

>mRNA_P-wetherbeei_contig16354.1.1 ID=mRNA_P-wetherbeei_contig16354.1.1|Name=mRNA_P-wetherbeei_contig16354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1110bp|location=Sequence derived from alignment at P-wetherbeei_contig16354:358..1525+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTCTGGACGAGTTTGTGGAACGACAATTAGACGGCATCAAGCGATC
GTATAACGAGCTGAGCGAGCGTCTGGGCGACCCGGATGTTTTGTCGGACA
GCAAAAAACTGATGCAGGTCACGAAAGACAGGAGTAAGATCGAGCGCGTC
GTTAACACGTACGACGAATACCAATTGGTGGCGTCGGACCTGGATGGCGC
GCGGGAGCTTTTTGCTGAGTCCGGAAGCGACACCGAGATGCGCGAAATGG
CGCGGGAAGAAGTCCGCGAGCTGGAGACTCGGCTGGAGGACATGGAAGCC
GACCTCAAGCTCATGCTGCTCCCCACCGACCCGAACGACGAGCGCAACGT
CATGCTCGAAATCCGCGCGGGCACCGGTGGCGACGAGGCCGCCATCTGGG
CCGGCGACCTGCTCAGCGTCTACCGCAAGTACGCGACGGAGTGCGGGTGG
GAGCTGCGCATCATTGACGAGGCGCTCGCCGACATGGGCGGCTACAAGGC
GGTCGTCGCTGAAGTCCGCGGCGAGAGCGTCTACAGCAAGCTGAAGTACG
AAGCCGGCGTCCACCGCGTGCAGCGTGTCCCGGCGACCGAGTCGCAGGGC
CGCGTGCACACATCAACGGCGACGGTCGCCGTCATGCCGGAGGTGGACGA
GGTGACCGTCCAGATCCGGCCGGAAGACATCGAAATGCACGCCGCGCGGG
CAGGTGGCGCCGGCGGGCAAAATGTCAACAAGGTGGAGAGCGCGATAGAC
CTGTTTCACAAGCCGACCGGCATCCGCATCTTCTGCCAGCAGGAGCGGTC
GCAGCTGCGCAACAAGGAGACAGCGCTGGCGCTGCTGCGGAGCCGCCTCT
ACGAGATGGAGCTGGAAAAGCAGCAGAGCGCGGTGGCGGGCAACCGCCGG
GCCCAGGTCGGCTCCGGCGCGCGGAGCGAGAAGATCCGGACGTATAATTG
GAAGGACTCGCGGTGCAGCGACCACCGCATCAACAAGAACTTCCCGCTGG
CGTCGTTTATGAGCGGCGACATCGACGAGATGATCTCGACGTGCATCATT
GCCGACCAGCAGGAAGCAATGGAAAACATGGCGCGGAGGCAGCAGCAGCC
CGTCGGGTGA
back to top