mRNA_P-wetherbeei_contig16347.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16347.1.1
Unique NamemRNA_P-wetherbeei_contig16347.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16347.1.1 vs. uniprot
Match: A0A6V1NFC1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NFC1_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 3.650e-11
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   43 QVLVGERVLMLTIGFDLCVPHPHRHLHAVLKAVFSAR--DGARPDRRRCTMRQALQAAANFATDQLRTDLCLRHPAENVAAAAVYLA 297
            ++L  ER+L+ T+GFD+C+ HP+++L  V K + +     G + D      RQ  Q A NF  D  RT LCLRHP   VAA AV+LA
Sbjct:  127 KILTCERILLHTMGFDMCIEHPYKYLIEVCKKLKNKGIIGGNQDD---AGGRQFAQTALNFVNDSFRTSLCLRHPPPLVAAGAVFLA 210          
BLAST of mRNA_P-wetherbeei_contig16347.1.1 vs. uniprot
Match: A0A7S4F3M7_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F3M7_CHRCT)

HSP 1 Score: 67.8 bits (164), Expect = 4.360e-11
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   43 QVLVGERVLMLTIGFDLCVPHPHRHLHAVLKAVFSARDGARPDRRRCTMRQALQAAANFATDQLRTDLCLRHPAENVAAAAVYLALRLL 309
            ++LV ERVL+ T+GFDL V H +R L A +K++   RD A             Q A NF  D LRT +CL++   +V+AAAVYLA R L
Sbjct:  163 RILVSERVLLQTLGFDLTVEHAYRPLLAYVKSIQGTRDLA-------------QVAWNFINDSLRTTICLQYAPRHVSAAAVYLAARYL 238          
BLAST of mRNA_P-wetherbeei_contig16347.1.1 vs. uniprot
Match: A0A7S0PZF2_9EUKA (Hypothetical protein n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PZF2_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 2.000e-10
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   43 QVLVGERVLMLTIGFDLCVPHPHRHLHAVLKAVFSARDGARPDRRRCTMRQALQAAANFATDQLRTDLCLRHPAENVAAAAVYLALRLL 309
            ++LV ERVL+ T+GFDL V HP+R L A +K++   RD A             Q A NF  D LRT +CL++    V+AAAV LA R L
Sbjct:  150 RILVSERVLLQTLGFDLTVEHPYRPLLAYVKSIQGTRDLA-------------QVAWNFINDSLRTTICLQYAPRCVSAAAVALAARYL 225          
BLAST of mRNA_P-wetherbeei_contig16347.1.1 vs. uniprot
Match: A0A7S0J0B8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J0B8_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 2.030e-10
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   43 QVLVGERVLMLTIGFDLCVPHPHRHLHAVLKAVFSARDGARPDRRRCTMRQALQAAANFATDQLRTDLCLRHPAENVAAAAVYLALRLL 309
            ++LV ERVL+ T+GFDL V HP+R L A +K++   RD A             Q A NF  D LRT +CL++    V+AAAV LA R L
Sbjct:  152 RILVSERVLLQTLGFDLTVEHPYRPLLAYVKSIQGTRDLA-------------QVAWNFINDSLRTTICLQYAPRCVSAAAVSLAARYL 227          
BLAST of mRNA_P-wetherbeei_contig16347.1.1 vs. uniprot
Match: D8LLM1_ECTSI (Cycline T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM1_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 6.480e-10
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   28 KRICPQVLVGERVLMLTIGFDLCVPHPHRHLHAVLKAVFSARDGARPDRR--RCTMRQALQAAANFATDQLRTDLCLRHPAENVAAAAVYL 294
            KR+  ++L+ ER ++ T+GF L V HP+  + ++LK +F+   GA   +   +   RQ  QAA +F  D L T LCL++  + VAAA VYL
Sbjct:  123 KRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGGKGADKALNRQLSQAATSFVNDSLLTTLCLQYRPKQVAAAVVYL 213          
BLAST of mRNA_P-wetherbeei_contig16347.1.1 vs. uniprot
Match: A0A6H5JMA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.440e-9
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   28 KRICPQVLVGERVLMLTIGFDLCVPHPHRHLHAVLKAVFSARDGARPDRR--RCTMRQALQAAANFATDQLRTDLCLRHPAENVAAAAVYL 294
            KR+  ++L+ ER ++ T+GF L V HP+  + ++LK +F+   GA   +   +   RQ  QAA +F  D L T LCL++  + VAAA VYL
Sbjct:  136 KRLREKILIAERCVLHTLGFQLTVEHPYSVVMSLLKKLFTMGKGADGGKGADKALNRQLSQAATSFVNDSLLTTLCLQYRPKQVAAAVVYL 226          
BLAST of mRNA_P-wetherbeei_contig16347.1.1 vs. uniprot
Match: A0A2P5XK92_GOSBA (CYCLIN domain-containing protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5XK92_GOSBA)

HSP 1 Score: 62.8 bits (151), Expect = 2.750e-9
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    1 FCVKIQNIRKRICPQVLVGERVLMLTIGFDLCVPHPHRHLHAVLKAVFSARDGARPDRRRCTMRQALQAAANFATDQLRTDLCLRHPAENVAAAAVYLALRLL 309
            FC++   + ++    +L+GERV++ T+GFDL V HP++ L   +K    A++               Q A NF  D LRT LCL+    ++AA A++LA + L
Sbjct:  104 FCIQFSEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNAL------------AQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFL 194          
BLAST of mRNA_P-wetherbeei_contig16347.1.1 vs. uniprot
Match: A0A7S3TKL7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TKL7_9SPIT)

HSP 1 Score: 62.0 bits (149), Expect = 4.620e-9
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   43 QVLVGERVLMLTIGFDLCVPHPHRHLHAVLKAVFSARDGARPDRRRCTMRQALQAAANFATDQLRTDLCLRHPAENVAAAAVYLA 297
            +VL+ ER+L+ T+GFDL + HP+R L   +K++   RD A             Q A NF  D LRT +CL++    VAAAA+ LA
Sbjct:  146 KVLISERILLQTLGFDLSIEHPYRPLLGYVKSITGTRDLA-------------QIAWNFINDSLRTTVCLQYSPRYVAAAALSLA 217          
BLAST of mRNA_P-wetherbeei_contig16347.1.1 vs. uniprot
Match: A0A7R9UUW5_DIALT (Hypothetical protein (Fragment) n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UUW5_DIALT)

HSP 1 Score: 61.6 bits (148), Expect = 6.230e-9
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   43 QVLVGERVLMLTIGFDLCVPHPHRHLHAVLKAVFSARDGARPDRRRCTMRQALQAAANFATDQLRTDLCLRHPAENVAAAAVYLA 297
            QVLV ERVL+ T+GF+L + HP+R L A +K+V   R+ A             Q A NF  D  RT +CL++  + VAAAAV LA
Sbjct:  136 QVLVSERVLLQTLGFELQLEHPYRELLAYIKSVAMPREFA-------------QLAWNFVNDSYRTLVCLQYDHKTVAAAAVALA 207          
BLAST of mRNA_P-wetherbeei_contig16347.1.1 vs. uniprot
Match: A0A1D6M6R4_MAIZE (Cyclin-T1-5 (Fragment) n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6M6R4_MAIZE)

HSP 1 Score: 59.3 bits (142), Expect = 8.900e-9
Identity = 34/101 (33.66%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    7 VKIQNIRKRICPQVLVGERVLMLTIGFDLCVPHPHRHLHAVLKAVFSARDGARPDRRRCTMRQALQAAANFATDQLRTDLCLRHPAENVAAAAVYLALRLL 309
            +K++ + ++    +L+GERV+++T+GFDL V HP++ L   +K +F     A             Q A NF  D LRT LCL+    ++A  A++LA + L
Sbjct:   44 IKLKEVYEQQKELILLGERVVLVTLGFDLNVNHPYKPLVEAIK-IFKVAQNA-----------LAQVAWNFVNDGLRTSLCLQFKPHHIAGGAIFLAAKFL 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16347.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1NFC1_HETAK3.650e-1143.68Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4F3M7_CHRCT4.360e-1144.94Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S0PZF2_9EUKA2.000e-1044.94Hypothetical protein n=2 Tax=Coccolithus braarudii... [more]
A0A7S0J0B8_9EUKA2.030e-1044.94Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
D8LLM1_ECTSI6.480e-1039.56Cycline T n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JMA6_9PHAE1.440e-939.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P5XK92_GOSBA2.750e-933.98CYCLIN domain-containing protein n=1 Tax=Gossypium... [more]
A0A7S3TKL7_9SPIT4.620e-941.18Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7R9UUW5_DIALT6.230e-944.71Hypothetical protein (Fragment) n=3 Tax=Diacronema... [more]
A0A1D6M6R4_MAIZE8.900e-933.66Cyclin-T1-5 (Fragment) n=3 Tax=Zea mays TaxID=4577... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16347contigP-wetherbeei_contig16347:701..1009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog242159.ABO94750
Preferred nameCycK
PFAMsCyclin_N
Model size309
Max annot lvl3041|Chlorophyta
KEGG koko:K15188
KEGG Pathwayko05202,map05202
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.1e-10
EggNOG OGsCOG5333@1|root,KOG0834@2759|Eukaryota,37HRJ@33090|Viridiplantae,34MUP@3041|Chlorophyta
DescriptionBelongs to the cyclin family
Cds size309
COG categoryD
BRITEko00000,ko00001,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.1862316-CDS-P-wetherbeei_contig16347:700..10091683186084.1862316-CDS-P-wetherbeei_contig16347:700..1009Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16347 701..1009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16347.1.1prot_P-wetherbeei_contig16347.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16347 701..1009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16347.1.1

>prot_P-wetherbeei_contig16347.1.1 ID=prot_P-wetherbeei_contig16347.1.1|Name=mRNA_P-wetherbeei_contig16347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
FCVKIQNIRKRICPQVLVGERVLMLTIGFDLCVPHPHRHLHAVLKAVFSA
RDGARPDRRRCTMRQALQAAANFATDQLRTDLCLRHPAENVAAAAVYLAL
RLL
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mRNA from alignment at P-wetherbeei_contig16347:701..1009-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16347.1.1 ID=mRNA_P-wetherbeei_contig16347.1.1|Name=mRNA_P-wetherbeei_contig16347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig16347:701..1009- (Phaeothamnion wetherbeei SAG_119_79)
TTTTGCGTTAAAATTCAAAACATCCGGAAACGGATCTGCCCCCAGGTGCT GGTCGGGGAGCGCGTCCTGATGCTGACCATCGGCTTCGATCTGTGCGTGC CGCACCCGCACCGCCATCTCCATGCCGTGCTGAAGGCTGTCTTCTCCGCC CGCGACGGCGCCCGCCCGGACCGCCGCCGCTGCACCATGCGGCAGGCGCT GCAGGCCGCCGCGAACTTTGCGACGGACCAGCTGCGGACAGACCTGTGCC TGAGGCACCCGGCAGAAAATGTGGCAGCAGCGGCGGTGTATTTGGCGCTG CGGCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16347:701..1009-

>mRNA_P-wetherbeei_contig16347.1.1 ID=mRNA_P-wetherbeei_contig16347.1.1|Name=mRNA_P-wetherbeei_contig16347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig16347:701..1009- (Phaeothamnion wetherbeei SAG_119_79)
TTTTGCGTTAAAATTCAAAACATCCGGAAACGGATCTGCCCCCAGGTGCT
GGTCGGGGAGCGCGTCCTGATGCTGACCATCGGCTTCGATCTGTGCGTGC
CGCACCCGCACCGCCATCTCCATGCCGTGCTGAAGGCTGTCTTCTCCGCC
CGCGACGGCGCCCGCCCGGACCGCCGCCGCTGCACCATGCGGCAGGCGCT
GCAGGCCGCCGCGAACTTTGCGACGGACCAGCTGCGGACAGACCTGTGCC
TGAGGCACCCGGCAGAAAATGTGGCAGCAGCGGCGGTGTATTTGGCGCTG
CGGCTGCTG
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