mRNA_P-wetherbeei_contig16343.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16343.1.1
Unique NamemRNA_P-wetherbeei_contig16343.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: D7FI29_ECTSI (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI29_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 6.380e-32
Identity = 68/122 (55.74%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    7 LVWSLMNKAAAFRRDGNKFGILSAVAP-GVKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTV--SAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
            L  S+MNKA AF+ +G  FG+ SAV P G KGF+YLEA NEP V+ +I+G+  IYHSKLR VPI DM  VL+V  + +A+P+R+ Q++RL R P Y DDLA+V E+   G RAVV +IPR+D
Sbjct:  174 LCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKP-YTDDLAKVVEVLAGGERAVVQFIPRID 294          
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A6H5JFI1_9PHAE (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.890e-30
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    4 QLVWSLMNKAAAFRRDGNKFGILSAVAP-GVKGFIYLEAMNEPDVR------RSISGMSKIYHSKLRMVPIRDMPNVLTV--SAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
            QL  S+MNKA AF+ +G  FG+ SAV P G KGF+YLEA NEP V+      R + G+  IYHSKLR VPI DM  VL+V  + +A+P+R+ Q++RL R P Y DDLA+V E+   G RAVV +IPR+D
Sbjct:   25 QLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGVRGVCLIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKP-YTDDLAKVVEVLAGGERAVVQFIPRID 152          
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A7S1TVX0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVX0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.100e-24
Identity = 55/120 (45.83%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    7 LVWSLMNKAAAFRRDGNKFGILSAVAPGVKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTVSAKAR-PLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
            +V  +M+KA A  R+GN  GI SA+  G K  I++E  +EP V+ ++ G++ +Y  K+++VP+  M  VL V+ +A+ PLREGQ+VRL R  +YK DLA+V E+ D GS+A+V  +PRLD
Sbjct:   32 IVTKIMSKAIAEAREGNDIGIESAMTTGSKEIIFVEGRSEPKVKAALGGINNVYMRKIKLVPLGQMTEVLNVARRAKKPLREGQWVRLKRG-VYKGDLAKVLEMVDGGSKALVQLVPRLD 150          
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A830HJZ3_9CHLO (Transcription elongation factor SPT5 n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HJZ3_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 1.520e-16
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    1 QQLVWSLMNKAAAFRRDGNKFGILSAVAPG-VKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTVSAKA-RPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
            +++++ LM K   F   G    I S  +   +KG IY+EAM E  VR +  G   IY SK+R+VPI +M  V+TV  +A   +R GQ+VR+ R   YKDDLARV E+ ++  +  V  +PRLD
Sbjct:  267 REVIFQLMQKCVDFASRGTPLMIYSVTSRDELKGHIYVEAMKESHVRDATRGFHFIYQSKVRLVPIDEMVEVVTVVRRASESIRPGQWVRM-RTGAYKDDLARVAEIDEAVGQITVQLVPRLD 388          
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A0L0DWS7_THETB (Transcription elongation factor SPT5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DWS7_THETB)

HSP 1 Score: 83.2 bits (204), Expect = 3.730e-16
Identity = 48/122 (39.34%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 QQLVWSLMNKAAAFRRDGNKFGILSAVA-PGVKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
            ++LV +LM K A  +  G + GI S +    ++G+ ++EA  E  V+ +ISG+  +  S + ++P+++M + L V+A+   LR+  +VR+ R   Y+ DLAR+  L DSGSRAVV  IPRLD
Sbjct:  118 RKLVLALMYKFADKQSRGKRMGITSVICRDNLRGYFFVEARREDTVKAAISGLRGVRQSSVTILPLKEMVDTLEVTAQDVTLRKDAWVRMKRGQ-YRGDLARIVRLDDSGSRAVVKLIPRLD 238          
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A6A5Y9T8_9PLEO (Transcription elongation factor SPT5 n=1 Tax=Aaosphaeria arxii CBS 175.79 TaxID=1450172 RepID=A0A6A5Y9T8_9PLEO)

HSP 1 Score: 82.8 bits (203), Expect = 5.220e-16
Identity = 44/124 (35.48%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 QQLVWSLMNKAAAFRRDGNKFGILSAVAPG--VKGFIYLEAMNEPDVRRSISGMSKIYHSKLRM-VPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
            +++V +L  K   + R G + G+ SA   G  + G++YLEA  + D+   I G+  I+ S+ ++ + +++ P++L    K  PL EG++VR++RPPLY+ DLA+V E++ +G    V  +PRLD
Sbjct:  217 REIVMALTKKIDDYARAGRQIGVYSAFERGGTMTGYMYLEADAKQDMLSLIDGVQNIFMSQPQIAIEVKERPDLLR-KRKRTPLEEGKFVRMVRPPLYRGDLAKVVEVHSNGLDCTVQLVPRLD 339          
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A197JXB0_9FUNG (Transcription elongation factor SPT5 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JXB0_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 4.640e-15
Identity = 46/122 (37.70%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 QQLVWSLMNKAAAFRRDGNKFGILSAVA-PGVKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
            + LV+SLM K            I +A +   +KG++Y+E M + +V+ +++G++ ++ SKL +VPI++M +VL V  K   LR G +VR+ R   Y  DLA++ ++ DSG  A V  IPRLD
Sbjct:  208 KDLVFSLMRKFFDTEYSAQPLEISAAFSRESLKGYVYIECMRQANVQAALNGLNNVFASKLTLVPIKEMTDVLKVRHKESDLRPGTWVRVKRGK-YAMDLAQILDIADSGDTAKVKLIPRLD 328          
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: G9N2I6_HYPVG (Transcription elongation factor SPT5 (Fragment) n=16 Tax=Trichoderma TaxID=5543 RepID=G9N2I6_HYPVG)

HSP 1 Score: 79.7 bits (195), Expect = 6.250e-15
Identity = 46/127 (36.22%), Postives = 75/127 (59.06%), Query Frame = 1
Query:    1 QQLVWSLMNKAAAFRRDGNKFGILSAVAPG-----VKGFIYLEAMNEPDVRRSISGMSKIY-HSKLRMVPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
            +++V S+M +    R   ++  I +A   G     +K F+Y+E   + D+  ++ G+  +Y HSKL +V I+DMP +L V+ K   L  G +VRL RPP +  DLA+V ++ ++G  A V +IPRLD
Sbjct:  172 REVVMSIMKRVEERRGTKDELAITAAFERGGPDSVMKSFVYVETQRQTDILVALDGILNVYPHSKLTLVDIKDMPELLRVT-KTPTLEPGAWVRLRRPPKHSGDLAQVIDVTENGLEARVRFIPRLD 297          
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A0M8N1Q7_9HYPO (Transcription elongation factor SPT5 n=1 Tax=Escovopsis weberi TaxID=150374 RepID=A0A0M8N1Q7_9HYPO)

HSP 1 Score: 79.7 bits (195), Expect = 6.270e-15
Identity = 46/127 (36.22%), Postives = 75/127 (59.06%), Query Frame = 1
Query:    1 QQLVWSLMNKAAAFRRDGNKFGILSAVAPG-----VKGFIYLEAMNEPDVRRSISGMSKIY-HSKLRMVPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
            ++++ S+M +    R   ++  I +A   G     +K FIY+E   + D+  ++ G+  +Y HSKL +V I+DMP +L V+ K   L  G +VRL RPP +  DLA+V ++ ++G  A V +IPRLD
Sbjct:  241 REVIMSIMKRVEERRGTKDELAITAAFERGGPDSVMKSFIYVETRRQTDILVALDGLLNVYPHSKLTLVDIKDMPELLRVT-KTPTLEPGAWVRLRRPPKHSGDLAQVLDVTENGLEARVRFIPRLD 366          
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A0L0VIV0_9BASI (Chromatin elongation factor SPT5 n=4 Tax=Puccinia striiformis TaxID=27350 RepID=A0A0L0VIV0_9BASI)

HSP 1 Score: 79.7 bits (195), Expect = 6.340e-15
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 QQLVWSLMNKAAAFRRDGNKFGILSAV-APGVKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
            +++V SL  K     +   +  I+SA     +KG+IY+EA  E DVR +I G   +Y S+ RMVP+ +MP++L    +  P+  G +VR+ R   Y  DLA+V E+ ++G    + ++PR+D
Sbjct:  197 KEIVASLFRKCEVHYKTAQELRIISAFYRDSLKGYIYVEARLELDVREAIQGFVGVYKSEFRMVPLEEMPDLLRTKKRETPIVPGGWVRIKRGK-YNGDLAQVLEVLENGDEVGLRFVPRID 317          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI29_ECTSI6.380e-3255.74Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
A0A6H5JFI1_9PHAE1.890e-3053.49Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
A0A7S1TVX0_9STRA4.100e-2445.83Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A830HJZ3_9CHLO1.520e-1641.46Transcription elongation factor SPT5 n=1 Tax=Pycno... [more]
A0A0L0DWS7_THETB3.730e-1639.34Transcription elongation factor SPT5 n=1 Tax=Theca... [more]
A0A6A5Y9T8_9PLEO5.220e-1635.48Transcription elongation factor SPT5 n=1 Tax=Aaosp... [more]
A0A197JXB0_9FUNG4.640e-1537.70Transcription elongation factor SPT5 n=1 Tax=Linne... [more]
G9N2I6_HYPVG6.250e-1536.22Transcription elongation factor SPT5 (Fragment) n=... [more]
A0A0M8N1Q7_9HYPO6.270e-1536.22Transcription elongation factor SPT5 n=1 Tax=Escov... [more]
A0A0L0VIV0_9BASI6.340e-1535.25Chromatin elongation factor SPT5 n=4 Tax=Puccinia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16343contigP-wetherbeei_contig16343:476..1482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FI29
PFAMsCTD,KOW,Spt5-NGN,Spt5_N
Model size363
Max annot lvl2759|Eukaryota
KEGG koko:K11292,ko:K15172
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.99e-32
EggNOG OGsCOG5164@1|root,KOG1999@2759|Eukaryota
Descriptionregulation of DNA-templated transcription, elongation
Cds size342
COG categoryK
BRITEko00000,ko03019,ko03021,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.0915167-UTR-P-wetherbeei_contig16343:475..4961683186084.0915167-UTR-P-wetherbeei_contig16343:475..496Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16343 476..496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.1025198-CDS-P-wetherbeei_contig16343:496..6161683186084.1025198-CDS-P-wetherbeei_contig16343:496..616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16343 497..616 +
1683186084.1118698-CDS-P-wetherbeei_contig16343:988..11591683186084.1118698-CDS-P-wetherbeei_contig16343:988..1159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16343 989..1159 +
1683186084.121614-CDS-P-wetherbeei_contig16343:1431..14821683186084.121614-CDS-P-wetherbeei_contig16343:1431..1482Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16343 1432..1482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16343.1.1prot_P-wetherbeei_contig16343.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16343 497..1482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16343.1.1

>prot_P-wetherbeei_contig16343.1.1 ID=prot_P-wetherbeei_contig16343.1.1|Name=mRNA_P-wetherbeei_contig16343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MNKAAAFRRDGNKFGILSAVAPGVKGFIYLEAMNEPDVRRSISGMSKIYH
SKLRMVPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYD
SGSRAVVAYIPRLD
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mRNA from alignment at P-wetherbeei_contig16343:476..1482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16343.1.1 ID=mRNA_P-wetherbeei_contig16343.1.1|Name=mRNA_P-wetherbeei_contig16343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1007bp|location=Sequence derived from alignment at P-wetherbeei_contig16343:476..1482+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCAATTGGTGTGGAGCCTGATGAACAAGGCAGCGGCGTTCCGGCGGGA CGGCAACAAGTTCGGCATCCTGAGTGCCGTGGCCCCCGGCGTGAAGGGCT TCATCTACCTTGAGGCCATGAACGAGCCCGATGTCCGGCGGGTGAGGACA GAGGAAGTGGAGAGGGAAGACGGAAGAGACGGGCGGATTACTGAGGTCTG AGAGGAGCGAGAGGCGGGTTTGCCGTCCGCTTTGACGATGCATGTAGCTG TTGTTTTCACCGGTTTCACTCCCCGAAGCCGGCTCGCCGGTATCGTTGGT GCCGCTGCTGCTTTCGTCTGTTGAAACTAGACAGACGTTCATGAGCTGCT CTTAGCCAGCTCATTTGTGCCCCCCCGGCCACCGTCGTCGCTGTCTTGCG TCGCTGTCGATGCTGTATTGCCATTGTTGCCATCGCTGCTGTCGTTGCCA TTGCCGCCGCCTTCAAACAATGAAACTGACGACAAATAACAAACGTGAAA AACCCGGTGACAGTCGATCTCGGGCATGTCGAAGATTTACCACAGCAAGC TGCGGATGGTGCCGATCCGGGACATGCCCAACGTGCTGACGGTGTCCGCC AAGGCCCGCCCGCTGCGCGAGGGGCAGTATGTCCGCCTTATCCGCCCGCC CCTCTACAAGGACGACCTCGCTCGCGTCGAGGAGGTGCGTTACTTGCTTG AGATGGTGGCTGTTTTCCTTGGCTTCTTTTGCAGTCCTGTTATCTTCCCT CTCATTTCACGGGCTCATGTTTTATTTTTCTCATTTCTGGGCACTGGTGC CCCTTCCCGATTTCCGCCGCTGGTTTGTGTCCCTGAACTCTGTTTTCTCC TTCATGCTTTCTGTTCCTCGTCCGTTGTTGTGTGGCCTATGATGTGACAC TCCAGTCCCAATTACGCGGCCCCATCTTTCTTTACTTTACCCTTCCCTCC GAGCAGTTGTACGACAGCGGGAGCCGCGCAGTGGTGGCGTACATCCCCCG CCTCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16343:476..1482+

>mRNA_P-wetherbeei_contig16343.1.1 ID=mRNA_P-wetherbeei_contig16343.1.1|Name=mRNA_P-wetherbeei_contig16343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig16343:476..1482+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAAGGCAGCGGCGTTCCGGCGGGACGGCAACAAGTTCGGCATCCT
GAGTGCCGTGGCCCCCGGCGTGAAGGGCTTCATCTACCTTGAGGCCATGA
ACGAGCCCGATGTCCGGCGGTCGATCTCGGGCATGTCGAAGATTTACCAC
AGCAAGCTGCGGATGGTGCCGATCCGGGACATGCCCAACGTGCTGACGGT
GTCCGCCAAGGCCCGCCCGCTGCGCGAGGGGCAGTATGTCCGCCTTATCC
GCCCGCCCCTCTACAAGGACGACCTCGCTCGCGTCGAGGAGTTGTACGAC
AGCGGGAGCCGCGCAGTGGTGGCGTACATCCCCCGCCTCGAC
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