mRNA_P-wetherbeei_contig1634.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1634.1.2
Unique NamemRNA_P-wetherbeei_contig1634.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1634.1.2 vs. uniprot
Match: D8LU97_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU97_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 8.340e-94
Identity = 197/443 (44.47%), Postives = 270/443 (60.95%), Query Frame = 1
Query:    1 ATRFSLDAQDLRDFGSQFFAP----NHKADDWVIVQGVAGVDASGAEVIAVVPPGKMRAGDTIVADARHVVLKPASLPWQQAAALPALAVSCLCPMERAGVTEETARGKRCIVTGGHSSLSLFPIQALKAWGADVVVVSTASADSLRKMGANAVIDFRKDSFAEVESGGVQLVVDTIGRENDETRRMIKQVLGSEYVSIMPQVLKLAVDEGLLYGAGKLMGYSKALGNSDARTYWMPGAAAVSAVAAXXXXXXXXXLAPASLAGG-VGMPEYLEALAWPKDADTGLRYGFPGRTTRSW-----DGXXXXXXXXXXXXXXXXXXXXXXXXGSGRRA-----EVLEIEGEAEL--VVGAGQRTVLFVSANSCRVCRYLQPHYRKLQSKYGNTVNFMHMNAQRDPTFARKLGLEAVPSFVSFRDGRVAKVVSTSNKEKIEELITEL 1278
            +TR  +DA  L   GS F+A     N   D  V++Q ++GV   G EVI VV PGK   G +++ + RH+V KP  L W +AA LP LA+SCL P+  AG  +    G+  +VTGGH SL+ F +  LKAWG  V + +T S    R +GA+  +DFRK+S+++V       VVDT+GRE +  + M+K+  G+EYVS+ P +LK+AV++GLL+G+GK++ Y K +   D+RTY++P   AV  V+          +    +    VGM EYLEALAWPKD DTGLR+GFPG+T RSW     D           XXXXXXXXXXXXXX  G RA     EV+ ++   +L  +V  G  T++FVS+ SCR C+YL P YRKL  +    V F  ++A   P  AR+LGL AVPSFV+FR+G V    +TS+K+ IE+L+ EL
Sbjct:   63 STRNPVDAYQLSGCGSTFYASGYDQNGNKDGLVLMQTISGVLDDGREVIGVVKPGKYPGGGSVLVEERHLVDKPQGLGWDKAAMLPFLAISCLWPLSEAGFGDSMDAGQTFVVTGGHGSLAPFVVAVLKAWGGRVALATTKSEGGARALGADLAVDFRKESYSDVVQD-FSAVVDTLGREKEGPQDMLKEARGAEYVSLQPSILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPNPEAVGLVSQVSALVAAGKVRLGEVGTDYVGMQEYLEALAWPKDTDTGLRFGFPGKTNRSWGWLGGDSLDERLAWEDEXXXXXXXXXXXXXXXXGGRAVSPTGEVVGLKSREDLKDLVREGG-TMIFVSSRSCRACKYLTPFYRKLARRQ-EQVLFGRVDASSHPELARQLGLTAVPSFVTFREGEVVTSKATSSKKNIEKLVEEL 502          
BLAST of mRNA_P-wetherbeei_contig1634.1.2 vs. uniprot
Match: A0A835YMJ9_9STRA (Thioredoxin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMJ9_9STRA)

HSP 1 Score: 275 bits (704), Expect = 2.780e-83
Identity = 169/438 (38.58%), Postives = 245/438 (55.94%), Query Frame = 1
Query:   79 DWVIVQGVAGVDASGAEVIAVVPPGKMRAGDTIVADARHVVLKPASLPWQQAAALPALAVSCLCPMERAGVTEETARGKRCIVTGGHSSLSLFPIQALKAWGADVVVVSTASADSLRKMGANAVIDFRKDSFAEVESGGVQLVVDTIGRENDETRRMIKQVLGSEYVSIMPQVLKLAVDEGLLYGAGKLMGYSKALGNSDARTYWMP--GAAA---VSAVAAXXXXXXXXXLAPASLAGG---VGMPEYLEALAWPKDADTGLRYGFPGRTTRSW------DGXXXXXXXXXXXXXXXXXXXXXXXXGSGRRAE---------------------VLEIEGEAELVVGAGQ-RTVLFVSANSCRVCRYLQPHYRKLQSKYGNTVNFMHMNAQRDPTFA-RKLGLEAVPSFVSFRDGRVAKVVSTSNKEKIEELITELA 1281
            D V++Q + G    G EVI VV P  +R G  +      +V KP     ++++ LP LA++    +  AG+T++TA GK C VTGG+S ++ F +  L  WGA V+ V+ A  ++  K GA+ V+DFR DSFA+   G + LVVDT+GRE+  +   +K+ LG++YVS+MP++LKLAVD+G+++G GK+M Y  AL   +   +W+P  G A+   V+AVA             A   G    V M EYLEALAWPKD DTGLRYGFPGRT+  W      +                         G+G  A                      + E+   A+L     + + +LFVS+ SCRVC+YL   YRKL+ ++ + + F+HM+AQ DP    R+LGL AVPSFV+F+ G++   V++S+K KIEEL+ +LA
Sbjct:   54 DLVLLQSIVGKTEDGKEVIGVVEPQTLRKGAKVEVQETMLVNKPQGWRVEESSMLPHLAITSGTALMAAGITQDTAPGKHCAVTGGNSPMAAFMMCLLAGWGASVIAVTNARKEACLKCGASTVVDFRADSFADEAKGSLDLVVDTLGRESKSSIAELKRALGAQYVSVMPEILKLAVDDGVIFGGGKIMAYRSALQGGNNHAFWLPDDGGASMGMVNAVAELSASSPHLQKWGAGAGGSTDMVSMQEYLEALAWPKDRDTGLRYGFPGRTSEYWMEPSAEEVEVEDEQVAVAYRQQPTLLQQFSGAGAGATAGGAAQAAKGGKKGASSKPIGGGIKEVASAADLAAATHEDKAILFVSSGSCRVCKYLGTWYRKLEPQFED-IEFLHMDAQSDPQLVGRQLGLNAVPSFVAFKGGKMLATVTSSDKTKIEELVQKLA 490          
BLAST of mRNA_P-wetherbeei_contig1634.1.2 vs. uniprot
Match: A0A6H5JDM2_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM2_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 3.440e-46
Identity = 117/257 (45.53%), Postives = 158/257 (61.48%), Query Frame = 1
Query:  547 MIKQVLGSEYVSIMPQVLKLAVDEGLLYGAGKLMGYSKALGNSDARTYWMPGAAAVSAVAAXXXXXXXXXLAPASLAGG-VGMPEYLEALAWPKDADTGLRYGFPGRTTRSW-----DGXXXXXXXXXXXXXXXXXXXXXXXXGSGRRA-----EVLEIEGEAEL--VVGAGQRTVLFVSANSCRVCRYLQPHYRKLQSKYGNTVNFMHMNAQRDPTFARKLGLEAVPSFVSFRDGRVAKVVSTSNKEKIEELITEL 1278
            M+K+  G+EYVS+ P +LK+AV++GLL+G+GK++ Y K +   D+RTY++P   AV  V+          +    +    VGM EYLEALAWPKD DTGLR+GFPG+T RSW     D             XXXXXXXXXXXX    RA     EV+ ++   +L  +V  G  T++FVS+ SCR C+YL P YRKL  +    V F  ++A   P  AR+LGL AVPSFV+FR+G V    +TS+K+ IE+L+ EL
Sbjct:    1 MLKEARGAEYVSLQPAILKVAVEDGLLFGSGKILQYQKTVAKDDSRTYFLPNPEAVGLVSQVSALVAAGKVRLGEVGTDYVGMQEYLEALAWPKDTDTGLRFGFPGKTNRSWGWLGGDSLDERLAWEDEDEXXXXXXXXXXXXXXXGRAVSPTGEVVGLKSRQDLKDLVREGG-TIVFVSSRSCRACKYLTPFYRKLARRQ-EQVLFGRVDASTHPELARQLGLTAVPSFVTFREGEVVTSKATSSKKNIEKLVEEL 255          
BLAST of mRNA_P-wetherbeei_contig1634.1.2 vs. uniprot
Match: A0A7S0ESB2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ESB2_9CRYP)

HSP 1 Score: 108 bits (269), Expect = 2.100e-21
Identity = 110/392 (28.06%), Postives = 180/392 (45.92%), Query Frame = 1
Query:  184 DARHVVLKPASLPWQQAAALPALAVSCLCPMERAGVTEETA-RGKRCIVTGGHSSLSLFPIQALKAWGADVVVVSTASADSLRKMGANAVIDFRKDSFAEVESGGVQLVVDTIGRENDETRRMIKQVLGSEYVSIMPQVLKLAVDEGLLYGAGKLMGYSKALGNSDARTYWMPGAAAVSAVAAXXXXXXXXXLAPASLAGGVGMPEYLEALAWPKDADTGLRYGFPGRTTRSWDGXXXXXXXXXXXXXXXXXXXXXXXXGSGRR---------AEVLEIEGEAELVVGAGQRTV-------LFVSANS------------CRVCRYLQPHYRKLQSKYGNTVNFMHMNAQRDPTFARKLGLEAVPSFVSFRDG-RVAKVVSTSNKEKIEELI 1269
            D+   +LKP+S    QA+  P+LA   L  + + G+   +  +GKR +VTGG S +    IQ  KA G+ V+  S  + +  +++GA+ VID++++SF + E   + LVVD +G   +E   + +   G  Y SIM  ++ +   EG L G  ++  +S+          W        ++           + P     G    E+LEA++WPKD DTGLR+GFPG++    +                XXXXXXXXX S R          +E +  E      VGA ++         L VS+ +            C  CR +   ++KL  K  + + F+ +N +   T A    +  VPSFV FR G +VA+     +++++   +
Sbjct:  154 DSTFAILKPSSFTNTQASLFPSLACLILQALWKCGIVNSSVLKGKRVVVTGGSSPVGSLAIQYFKALGSHVIAASDKAGEE-KRIGADEVIDYKRNSFYD-ELPDLFLVVDALGSSTEEELALRRA--GILYASIMNPLVAMVTREGALKGGLEVYKFSR---GEQTPCEWRLSEEGARSLREFAELMQGAGVKPKFDREGYTAAEWLEAMSWPKDMDTGLRFGFPGQSLWKDEDTASGASQETSEYEREXXXXXXXXXXSLRELYERVRQTGSEEISFEAFKRSQVGAVRQVESAEHMDELLVSSPADVPVLVEFHAPFCMTCRKMMTRFKKLSKKKNDAI-FLSVNVKEQKTVAGMYQVTDVPSFVLFRAGTKVAQCKGAISEKELSRFL 537          
BLAST of mRNA_P-wetherbeei_contig1634.1.2 vs. uniprot
Match: A0A5J4Z2Z4_PORPP (Thioredoxin domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2Z4_PORPP)

HSP 1 Score: 98.2 bits (243), Expect = 2.990e-18
Identity = 113/358 (31.56%), Postives = 166/358 (46.37%), Query Frame = 1
Query:  307 RGKRCIVTGGHSSL-SLFPIQALKAWGADVVVVSTAS-----ADSLRKMGANAVIDFRKDSFA-EVESGGVQLVVDTIGRENDETRRMIKQVLGSEYVSIMPQVLKLAVDEGLLYGAGKLMGYSKALGNSDART-------YWMPGAAAVSAVAAXXXXXXXXXLA--PASLAGGVGMPEYLEALAWPKDADTGLRYGFP-----GRTTRS-WDGXXXXXXXXXXXXXXXXXXXXXXXXGSGRRAEVLEIEGEAELV-----VGAGQRTVLFVSANSCRVCRYLQPHY----RKLQSKYGNTVNFMHMNAQRDPTFARKLGLEAVPSFVSFRDG-RVAKVVSTSNKEKIEELITELAA 1284
            RG+R +V GG +S  + F + AL   GA VV V+TA+       +L K+GA+AVID RK S++ E++      V+D +  E +  R +     G+ Y+SIMP  LK + ++GLL         SKA  +S+ART        W         VAA         L+  P  L+    M   LEA  WP+D D+G RYGFP     G T+ S  D                  XXXXXX      + V ++ G + L+         +  +LFVSA SC+ C+ ++P +    R+L   + N   F  +   RD   A+ L +  VP F+ +R G R    VST   +  +E + +  A
Sbjct:  136 RGRRVVVIGGANSPGACFAVHALSRLGARVVCVTTATRIGFDGSALLKLGADAVIDPRKVSWSDELKGSSYDAVLDALADEEENARIINALPRGARYLSIMPYALKGSTEDGLLG--------SKARSSSEARTGKVNTEQQWS------DVVAAVLERVDLDALSRIPTKLS---SMGAVLEAATWPRDTDSGERYGFPAPSVWGDTSDSEGDDAPGVVRSAVFYEPEEGEXXXXXXFSESIVSRVTDMTGLSTLLEDNEFADNDESLLLFVSATSCKRCKIIKPQFEIIARELSEAHPN-AKFGLLEIGRDKEPAKFLNVRDVPQFLLYRRGARFDLQVSTQTFDSFQEGLEKALA 475          
BLAST of mRNA_P-wetherbeei_contig1634.1.2 vs. uniprot
Match: R1FNI8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FNI8_EMIHU)

HSP 1 Score: 80.5 bits (197), Expect = 4.130e-13
Identity = 71/226 (31.42%), Postives = 104/226 (46.02%), Query Frame = 1
Query:  205 KPASLPWQQAAALPALAVSCLCPMERAGVTEETARGKRCIVTGGHSSLSLFPIQALKAWGA-DVVVVSTASADSLRKMGANAVIDFRKDSFAEVESG-GVQLVVDTIGRENDETRRMIKQVLGSEYVSIMPQVLKLAVDEGLLYGAGKLMGYSKALGNS--DARTYWMPGAAAVSAVAAXXXXXXXXXLAP---ASLAGGVGMPEYLEALAWPKDADTGLRYGFPG 861
            KP SL    AA LP L ++    +               ++ G    L    ++ L A GA   V  +   AD+L++ GA+AV ++  +SF E  +G G+  VVD +GRE  E    +++ LG  YVS     L    ++G L  A    G+ +  G    + R  W     A  A++          L P   AS A   GM +YLE L WP+D++TG R+GFPG
Sbjct:   79 KPRSLSHVAAAQLPILVLTAAAALHSV------------LIAGSTGRLPKLLVELLSARGARPCVAAAEGGADALQRAGASAVFNYHAESFTEQLAGTGLSAVVDVVGRE--EEPGWVREALGCAYVSAASPALLSLSEDGALAAA---RGWQRRWGRRPHEGRRVWRADDRAAEALSEAMALLESGKLTPPAEASAASETGM-QYLEFLRWPRDSETGRRFGFPG 286          
BLAST of mRNA_P-wetherbeei_contig1634.1.2 vs. uniprot
Match: A0A6I6MKQ7_9CAUL (Zinc-type alcohol dehydrogenase-like protein n=1 Tax=Terricaulis silvestris TaxID=2686094 RepID=A0A6I6MKQ7_9CAUL)

HSP 1 Score: 77.8 bits (190), Expect = 5.840e-12
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1
Query:  196 VVLKPASLPWQQAAALPALAVSCLCPM-ERAGVTEETARGKRCIVTGGHSSLSLFPIQALKAWGADVV-VVSTASADSLRKMGANAVIDFRKDSFAEVESGGVQLVVDTIGRENDETRRMIKQVLGSEYVSIMPQ----VLKLAVDEGLLYG 633
            V  KP +L + +AAALP  A++    + +  G++ ETARGKR I+  G   +  F IQ +KAWGA V  + ST + + ++ +GA+ V+D+ KD FA++      +  DT     ++    +K   G+ YVSI+      + K  +DEG  +G
Sbjct:  113 VASKPTNLTFAEAAALPYAALTAWTALVDVVGLSPETARGKRIIIPRGAGGVGSFAIQLMKAWGAHVASICSTRNVELVKSLGADVVVDYTKDDFADLLQE-YDVAFDTAFDTEEKLLGALKTNAGAHYVSIVTPRFQFIDKYGLDEGQKHG 263          
BLAST of mRNA_P-wetherbeei_contig1634.1.2 vs. uniprot
Match: UPI00145FB259 (zinc-binding dehydrogenase n=2 Tax=Acinetobacter TaxID=469 RepID=UPI00145FB259)

HSP 1 Score: 69.7 bits (169), Expect = 2.800e-9
Identity = 47/156 (30.13%), Postives = 83/156 (53.21%), Query Frame = 1
Query:  175 IVADARHVVLKPASLPWQQAAALPALAVSCLCPM-ERAGVTEETARGKRCIVTGGHSSLSLFPIQALKAWGADVVVV-STASADSLRKMGANAVIDFRKDSFAEVESGGVQLVVDTIGRENDETRRMIKQVLGSEY-VSIMPQVLKLAVDEGLLYG 633
            +V     +  KPASL + +AA+LP +  +    +  +AG+  E  +GKR  + GG   +  F +Q +KAWG  V    ST   + L ++GA+ VID++K+ +++V S    + ++TIG   +     I +  G  Y  +++  +L+   D GL+ G
Sbjct:  108 VVVSVDDIAYKPASLTFNEAASLPYVICTVWDALVNKAGLNPENTKGKRVFIQGGSGGIGSFAVQLIKAWGGYVATTCSTNHVEKLSELGADHVIDYKKEDYSQVLSD-FDVALETIGGTLESKTLSILRHDGHGYFTTLIHPLLRNFDDNGLIKG 262          
BLAST of mRNA_P-wetherbeei_contig1634.1.2 vs. uniprot
Match: C6B6E9_RHILS (Alcohol dehydrogenase zinc-binding domain protein n=124 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=C6B6E9_RHILS)

HSP 1 Score: 69.3 bits (168), Expect = 3.430e-9
Identity = 49/135 (36.30%), Postives = 79/135 (58.52%), Query Frame = 1
Query:  148 PGKMRAG---DTIVADARHVVLKPASLPWQQAAALPALAVSCLCPM-ERAGVTEETARGKRCIVTGGHSSLSLFPIQALKAWGADVVV-VSTASADSLRKMGANAVIDFRKDSFAEVESGGVQLVVDTIGRENDE 537
            PGK R G   + I  DA  V LKPA+L  ++AA++P +A++    + ERA    +  +G+R ++  G   +    IQ  K  GA V   VSTA+ D ++ +GA+ V+D+RKD F +V  G   +V++++G+E  E
Sbjct:   91 PGKDRIGTFAEYIAIDAADVALKPANLSMEEAASIPLVALTAWQALVERA----KLQKGQRVLIHAGSGGVGTIAIQLAKHLGAHVATTVSTANIDLVKSLGADVVVDYRKDDFEKVLKG-YDVVLNSLGKETLE 220          
BLAST of mRNA_P-wetherbeei_contig1634.1.2 vs. uniprot
Match: A0A7V8VNT4_9BACT (NAD(P)-dependent alcohol dehydrogenase (Fragment) n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7V8VNT4_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 9.090e-9
Identity = 54/166 (32.53%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  190 RHVVLKPASLPWQQAAALPALAVSCLCPMERAGVTEETARGKRCIVTGGHSSLSLFPIQALKAWGADVV-VVSTASADSLRKMGANAVIDFRKDSFAEVESGGVQ---LVVDTIGRENDETRRMIKQVLGSEYVSIMPQVLKLAVDEGLLYGAGKLMGYSKALGNS 675
            R VVLKPA+L ++QAAA+P  A++ L  +   G  +    G++ ++ G    +  F +Q  KA+GA+V  V ST + + +R +GA+ VID+ K+ F +    G Q   L+ D +G  +   RR I Q  G   + ++  V     ++G L    +L+G  +AL  S
Sbjct:  109 RAVVLKPANLTFEQAAAVPVAAITALQGLRDKGKIQA---GQKVLINGASGGVGTFAVQIAKAFGAEVTGVCSTRNLEMVRSIGADHVIDYTKEDFTK----GAQRYDLLFDLVGNHSFSERRRILQPNG---ICVLAGVGGSGSNDGQL--GRRLLGTLRALAGS 262          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1634.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU97_ECTSI8.340e-9444.47Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A835YMJ9_9STRA2.780e-8338.58Thioredoxin domain-containing protein n=1 Tax=Trib... [more]
A0A6H5JDM2_9PHAE3.440e-4645.53Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A7S0ESB2_9CRYP2.100e-2128.06Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A5J4Z2Z4_PORPP2.990e-1831.56Thioredoxin domain-containing protein n=1 Tax=Porp... [more]
R1FNI8_EMIHU4.130e-1331.42Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A6I6MKQ7_9CAUL5.840e-1234.21Zinc-type alcohol dehydrogenase-like protein n=1 T... [more]
UPI00145FB2592.800e-930.13zinc-binding dehydrogenase n=2 Tax=Acinetobacter T... [more]
C6B6E9_RHILS3.430e-936.30Alcohol dehydrogenase zinc-binding domain protein ... [more]
A0A7V8VNT4_9BACT9.090e-932.53NAD(P)-dependent alcohol dehydrogenase (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1634contigP-wetherbeei_contig1634:3812..6859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LU97
Model size1522
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue7.51e-84
EggNOG OGsCOG0604@1|root,KOG1198@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin domain
Ec32 orthologEc-14_004200.1
Descriptionoxidoreductase activity
Cds size1131
COG categoryC
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1634.1.2prot_P-wetherbeei_contig1634.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1634 3968..6624 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.9103057-UTR-P-wetherbeei_contig1634:3811..39671683186083.9103057-UTR-P-wetherbeei_contig1634:3811..3967Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1634 3812..3967 +
1683186083.9845214-UTR-P-wetherbeei_contig1634:6624..68591683186083.9845214-UTR-P-wetherbeei_contig1634:6624..6859Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1634 6625..6859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.9210057-CDS-P-wetherbeei_contig1634:3967..41771683186083.9210057-CDS-P-wetherbeei_contig1634:3967..4177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1634 3968..4177 +
1683186083.9302623-CDS-P-wetherbeei_contig1634:4396..45201683186083.9302623-CDS-P-wetherbeei_contig1634:4396..4520Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1634 4397..4520 +
1683186083.9392822-CDS-P-wetherbeei_contig1634:4702..48061683186083.9392822-CDS-P-wetherbeei_contig1634:4702..4806Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1634 4703..4806 +
1683186083.9481723-CDS-P-wetherbeei_contig1634:5068..51331683186083.9481723-CDS-P-wetherbeei_contig1634:5068..5133Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1634 5069..5133 +
1683186083.9576995-CDS-P-wetherbeei_contig1634:5405..58161683186083.9576995-CDS-P-wetherbeei_contig1634:5405..5816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1634 5406..5816 +
1683186083.9672418-CDS-P-wetherbeei_contig1634:6186..62981683186083.9672418-CDS-P-wetherbeei_contig1634:6186..6298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1634 6187..6298 +
1683186083.9760983-CDS-P-wetherbeei_contig1634:6519..66241683186083.9760983-CDS-P-wetherbeei_contig1634:6519..6624Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1634 6520..6624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1634.1.2

>prot_P-wetherbeei_contig1634.1.2 ID=prot_P-wetherbeei_contig1634.1.2|Name=mRNA_P-wetherbeei_contig1634.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=377bp
MRAGDTIVADARHVVLKPASLPWQQAAALPALAVSCLCPMERAGVTEETA
RGKRCIVTGGHSSLSLFPIQALKAWGADVVVVSTASADSLRKMGANAVID
FRKDSFAEVESGGVQLVVDTIGRENDETRRMIKQVLGSEYVSIMPQVLKL
AVDEGLLYGAGKLMGYSKALGNSDARTYWMPGAAAVSAVAAAARLAAAGA
LAPASLAGGVGMPEYLEALAWPKDADTGLRYGFPGRTTRSWDGGGGGAAE
EDGDEEEDEEGIEAAAGGSGRRAEVLEIEGEAELVVGAGQRTVLFVSANS
CRVCRYLQPHYRKLQSKYGNTVNFMHMNAQRDPTFARKLGLEAVPSFVSF
RDGRVAKVVSTSNKEKIEELITELAA*
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mRNA from alignment at P-wetherbeei_contig1634:3812..6859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1634.1.2 ID=mRNA_P-wetherbeei_contig1634.1.2|Name=mRNA_P-wetherbeei_contig1634.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3048bp|location=Sequence derived from alignment at P-wetherbeei_contig1634:3812..6859+ (Phaeothamnion wetherbeei SAG_119_79)
GCAACGCGGTTTAGCCTCGACGCGCAGGATTTGAGAGATTTCGGGAGCCA ATTCTTCGCGCCGAACCACAAGGCGGACGACTGGGTGATTGTTCAAGGCG TCGCCGGAGTGGACGCCAGCGGCGCCGAGGTAATCGCCGTGGTCCCTCCC GGGAAGATGCGAGCCGGCGACACCATCGTGGCCGACGCCAGGCACGTCGT GCTCAAGCCGGCATCGCTGCCGTGGCAGCAAGCGGCGGCGCTCCCGGCAT TGGCCGTTTCGTGCCTCTGCCCCATGGAACGTGCCGGCGTCACCGAGGAG ACTGCGCGCGGGAAGCGCTGCATCGTCACCGGAGGCCACAGCAGCCTGTC TTTGTTTCCCATTCAGGTGACGCTTTTGGAGGTTTCAGTTGAAATGCAAT TACATCTCGATGCCGGAAGATGGCGATCTTCGCTGTCGCATTCGGTGATT GCCCGGCCGGGGAAGGGTGTCCTGCCTCGGCCTTCTTTCTTGAGATGACG TGATTGCATCAGACAAATGACATTGAAGTTTGGTATGCTCCCATCTGCCG TTGCTTCTGGGTGCACGTGACATTGGCGGCGACAGGCATTGAAGGCTTGG GGCGCCGACGTGGTCGTGGTGTCGACGGCGAGCGCCGACTCGCTGCGGAA GATGGGGGCCAACGCTGTGATTGACTTTCGCAAGGACAGCTTTGCGGAGG TCGAGTCAGGTGAGAAATGGTATATAGGGATGTGTTTCCCACCTACTCGC CCTTTCTTTCCTGAAACTGTTGCGAGCCTGATGTCGTTTTTGTACTTGCG GTTTGAAGTGAAGTTAGACATCATGGGCCGCATTTTTGCATGCATTATTT GATGGTTTTCTCTCTTTCGTCGCCCGTCAATTGCTCGGCAGGCGGCGTGC AGCTGGTGGTTGATACCATCGGGCGGGAGAATGACGAGACGCGGCGGATG ATCAAGCAGGTCCTCGGCTCCGAGTATGTCTCCATCATGCCGCAGGTGAG AGCGGCTTTCGCGTTTGTATAACTTACAGTGGACCGGCTCGGGCATTTCC CTCTGACCTGACGGGAGCAGGGCCGTTTGTTCGAGTTTTTGTTTTTCGGG CCTCTCGGTTGAATCTGTTTCTGCCCTGAAAGGGCTTTCGTACAGCGGTT TCGTAAAAGGGTGCCGAAAGGCTGTTGTAGCGCGTGTTTGTCGTCGTTTT TACCATCGAAAGGGGTTGGAAGGGGGGTCTGTTCCTGGCCGCCTTCTTTG TACGCAGGTCCTGAAGCTGGCGGTGGATGAAGGGCTTTTGTACGGCGCCG GAAAACTCATGGGCTACTCAAAGTGAGTTTGATTCAGCCGGATACTGTTC TATGGCACTAGCCAGGCGCTCGACGGCGGCTTCGGTTTCGCCTGAATCTC GAGGAAATTCGTTTAAAAAAGCTTTGCCATACCGCCGCATTTATAGGGCG TGCGTGATAACAGCCGCATTTCATCCCGCTTTTGCTATGGGAACGCAGTG TCGTCCTTGCAGAAGTCTTTTCCCTCATTCTTTCTCTCTTCTCTCTGTCT TGGCTTATACTTGCTGCACATCTCGAACGGTTCTCTTACACCAGGGCGCT CGGAAACAGCGACGCCCGCACCTACTGGATGCCGGGGGCGGCGGCCGTGT CGGCGGTCGCCGCGGCTGCCCGCCTGGCGGCGGCGGGCGCGCTGGCGCCG GCATCGCTCGCCGGCGGCGTCGGCATGCCGGAGTACCTCGAAGCGCTTGC GTGGCCGAAGGATGCCGACACCGGGCTGCGCTACGGGTTCCCCGGGCGGA CGACGCGCAGCTGGGACGGGGGCGGCGGCGGCGCCGCCGAAGAAGATGGA GATGAGGAGGAAGATGAAGAAGGGATTGAGGCGGCGGCGGGAGGGAGCGG GAGAAGGGCGGAGGTGCTGGAGATTGAAGGGGAGGCGGAGCTGGTGGTCG GGGCCGGGCAGCGGACGGTGCTCTTCGTCAGCGCCAACTCGTGCCGCGTC TGCAGGTGGGTCGGGGTTGGAGTTTGTTGTATCAGGGTTTGCATTTGTGC TTCTTTCCTGCTGGTGCAGCCTCTTCTATGCTTTTTTGGAAGTGAGTGTT TTTGTCCTAAATGGTTGTTACATGCAGCATCTCCACTCTTTCGGCTGGAA TGGCGAAATACCTGCACTACCATTTCATTTCCTGTCCTTTCTTCCTACTG CAGTGTCTCATCCTTTGACAAGGTTATCATCTTTCTTCTTGCTTCTATAG TTGAACATGTCCGTTCGACCCTTCTCAGCATGGACTGCCGCCTTTTTGCA TTTACCTAACGTAATGCTGGTTACCTGATCGTCTCCCGCCTTGCCGCCGA AACCACCTTGACAACCCAACATTAGGTACCTCCAGCCGCACTACCGGAAA CTGCAATCAAAATATGGCAACACGGTTAACTTTATGCACATGAATGCCCA GCGGGACCCCACCTTCGCCCGCAAGCTGGGGCTCGAGGTCAGTCACGGCC TTCTTGCCGTATCATTTCCCCAACAGAAGCTTGCTTACCCTGCACCAAAA ACTGGCCGCCGTCTACAAGTGAGCTCTGCTGCGGCGCTCGCACAGTTCTG GCCCCTCTTGCGGCCTCATAACTGGGTGTCGATTCTCATGCTGCCCTTGG TGTTGCTTCCCTTTTTCCATCATTGGTTTCTTTTCTCCTCCGACTCTCTT TCCTTCAGGCGGTTCCGTCCTTCGTGTCGTTCCGGGACGGGCGGGTGGCC AAGGTGGTGAGCACGAGCAACAAGGAAAAGATCGAGGAGCTCATCACCGA GCTGGCGGCCTGAAGCGGGGACGGGTGAGCTGGTTGCGGCAGATGCGACG CGGCGAGGGCAGCGTGGTGGCAGCAGGATGGCGGCGCGGCATTGCTGCGC AGCGGCAGGGCGGTGGCGCAGCGGCAAAGGTCCGGCGCAGCGGCAGGATG GCGGCGCCAGCATGCAAATGTTGTCGCCGACGGTCACCAGTTGTGGCCTA CGGCGGCGAAAATTTGAGCACCCCGCGGAGCATGGCATATAGTAGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1634:3812..6859+

>mRNA_P-wetherbeei_contig1634.1.2 ID=mRNA_P-wetherbeei_contig1634.1.2|Name=mRNA_P-wetherbeei_contig1634.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1131bp|location=Sequence derived from alignment at P-wetherbeei_contig1634:3812..6859+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGCCGGCGACACCATCGTGGCCGACGCCAGGCACGTCGTGCTCAA
GCCGGCATCGCTGCCGTGGCAGCAAGCGGCGGCGCTCCCGGCATTGGCCG
TTTCGTGCCTCTGCCCCATGGAACGTGCCGGCGTCACCGAGGAGACTGCG
CGCGGGAAGCGCTGCATCGTCACCGGAGGCCACAGCAGCCTGTCTTTGTT
TCCCATTCAGGCATTGAAGGCTTGGGGCGCCGACGTGGTCGTGGTGTCGA
CGGCGAGCGCCGACTCGCTGCGGAAGATGGGGGCCAACGCTGTGATTGAC
TTTCGCAAGGACAGCTTTGCGGAGGTCGAGTCAGGCGGCGTGCAGCTGGT
GGTTGATACCATCGGGCGGGAGAATGACGAGACGCGGCGGATGATCAAGC
AGGTCCTCGGCTCCGAGTATGTCTCCATCATGCCGCAGGTCCTGAAGCTG
GCGGTGGATGAAGGGCTTTTGTACGGCGCCGGAAAACTCATGGGCTACTC
AAAGGCGCTCGGAAACAGCGACGCCCGCACCTACTGGATGCCGGGGGCGG
CGGCCGTGTCGGCGGTCGCCGCGGCTGCCCGCCTGGCGGCGGCGGGCGCG
CTGGCGCCGGCATCGCTCGCCGGCGGCGTCGGCATGCCGGAGTACCTCGA
AGCGCTTGCGTGGCCGAAGGATGCCGACACCGGGCTGCGCTACGGGTTCC
CCGGGCGGACGACGCGCAGCTGGGACGGGGGCGGCGGCGGCGCCGCCGAA
GAAGATGGAGATGAGGAGGAAGATGAAGAAGGGATTGAGGCGGCGGCGGG
AGGGAGCGGGAGAAGGGCGGAGGTGCTGGAGATTGAAGGGGAGGCGGAGC
TGGTGGTCGGGGCCGGGCAGCGGACGGTGCTCTTCGTCAGCGCCAACTCG
TGCCGCGTCTGCAGGTACCTCCAGCCGCACTACCGGAAACTGCAATCAAA
ATATGGCAACACGGTTAACTTTATGCACATGAATGCCCAGCGGGACCCCA
CCTTCGCCCGCAAGCTGGGGCTCGAGGCGGTTCCGTCCTTCGTGTCGTTC
CGGGACGGGCGGGTGGCCAAGGTGGTGAGCACGAGCAACAAGGAAAAGAT
CGAGGAGCTCATCACCGAGCTGGCGGCCTGA
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