mRNA_P-wetherbeei_contig16322.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16322.1.1
Unique NamemRNA_P-wetherbeei_contig16322.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16322.1.1 vs. uniprot
Match: A0A6H5L3L8_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L8_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 7.920e-84
Identity = 159/293 (54.27%), Postives = 185/293 (63.14%), Query Frame = 1
Query:    1 VRGEWLLLWGALKRLCASGRTLLLTDGACRLHAVPRTRLENPKRLDEAGRALAFVGQSFPLETHVKTAVDPFFVERVEEQQRARAAAAVAATYVGRLRQRIDGAGTDWECLTA---DSDDEEGTGFEPL------------RDTVGNKRSWRAAAAATGAVLEAVDRVLSGRALNAFCAVRPPGHHAGVHLHCVGAVSNGFCLLNNVAVGALYARHQRGAAR---------------DVLCRTLDPGFLYCSMHAY--GESSDGGPT-VFPGTGGEDDAPHAHVLNLPLGPQV 780
            VRGEW  L  AL+R   + RTLLLTD  CR+HAVP  RLE P+R+DEA RAL F+ + +P ET +K +VDP +VE V  +     A   + TYV +LR R+D AG+  ECLTA     DD  G G                RDTVGNKRSW AA  A GAVLEAVDRVL G A NAFCAVRPPGHHAGV LHC+GAVSNGFC+LNNVA+ ALYA H    AR               DVLCRT  PGFLY S+HA+  GE  +     +FPGTG E +A H +VLN+PLG QV
Sbjct:   64 VRGEWAALRSALRRRVGAARTLLLTDATCRMHAVPEDRLEQPRRMDEAWRALLFLQKVYPNETVLKRSVDPAWVEMVTPETMLMLAH--SRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGGLGGGDRGGPQERAMAVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGNVARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEA-HGNVLNIPLGDQV 353          
BLAST of mRNA_P-wetherbeei_contig16322.1.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 1.330e-75
Identity = 156/279 (55.91%), Postives = 180/279 (64.52%), Query Frame = 1
Query:    1 VRGEWLLLWGALKRLCASGRTLLLTDGACRLHAVPRTRLENPKRLDEAGRALAFVGQSFPLETHVKTAVDPFFVERVEEQQRARAAAAVAATYVGRLRQRIDGAGTDWECLTA---DSDDEEGTGFEPL------------RDTVGNKRSWRAAAAATGAVLEAVDRVLSGRALNAFCAVRPPGHHAGVHLHCVGAVSNGFCLLNNVAVGALYARHQRGAARDVLCR-TLDPGFLYCSMHAY--GESSDGGPT-VFPGTGGEDDAPHAHVLNLPLGPQV 780
            VRGEW  L  AL+R   + RTLLLTDG CRLHAVP  RLE P+R+DEA RAL F+ + +P ET +K +VDP +VE V  +     A   + TYV +LR R+D AG+  ECLTA     DD  G G                RDTVGNKRSW AA  A GAVLEAVDRVL G A NAFCAVRPPGHHAGV LHC+GAVSNGFC+LNNVA+ ALYA H         C  T  PGFLY S+HA+  GE  +     +FPGTG E +A H +VLNLPLG QV
Sbjct: 1506 VRGEWAALRSALRRRVGAARTLLLTDGTCRLHAVPEDRLEQPRRMDEAWRALLFLQKVYPNETVLKRSVDPAWVEMVTPETMLMLAH--SRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGGLGGGDRGGAQERAMAVYGRDTVGNKRSWEAAMTAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHY-----GTCCAWTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEA-HGNVLNLPLGDQV 1776          
BLAST of mRNA_P-wetherbeei_contig16322.1.1 vs. uniprot
Match: A0A8J2SBW9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBW9_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.690e-37
Identity = 102/256 (39.84%), Postives = 135/256 (52.73%), Query Frame = 1
Query:   58 RTLLLTDGACRLHAVPRTRLENPKRLDEAGRALAFVGQSFPLETHVKTAVDPFFVERVEEQ---QRARAAAAVAAT--YVGRLRQRIDGAGTDWECLTADSDDEEGTGFEPLRDTVGNKRSWRAAAAATGAVLEAVDRVLSGRALNAFCAVRPPGHHAGVHLHCVGAVSNGFCLLNNVAVGALYARHQRGAAR---------------DVLCRTLDPGFLYCSMHAYGESSDGGPTVFPGTGGEDDAPHAHVLNLP 765
            RTL + D  CRLH+        P  +++A RA+A       +E   +   +  +VER       QRA ++ A A T  YVG +RQR     T+   +    D+          DT GN+ +W AA AA+ AV++AVD VLSG A NA CAVRPPGHHAG  ++ +GA  NG+CLLN+ A+GA +A H+RG  R               D+L RT DP F+Y S+HA GE       VFPG+G      H  VLN P
Sbjct: 1264 RTLCVYDRRCRLHST------KPHCVEQARRAVAAAAV---VEARARRCSNKLWVERTVHGSYLQRAASSLAYAHTRSYVGAVRQRCLDLATEATMIFGGEDE----------DTCGNRDTWGAAIAASAAVIQAVDAVLSGEARNALCAVRPPGHHAGASINSLGAPGNGYCLLNHAALGAKHAAHERGLKRVAVFDFDVHHGNGTEDILARTFDPRFMYLSLHATGED------VFPGSGRRARPDHPGVLNAP 1494          
BLAST of mRNA_P-wetherbeei_contig16322.1.1 vs. uniprot
Match: F0Y5Z7_AURAN (Hist_deacetyl domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Z7_AURAN)

HSP 1 Score: 144 bits (364), Expect = 1.480e-35
Identity = 95/251 (37.85%), Postives = 128/251 (51.00%), Query Frame = 1
Query:   58 RTLLLTDGACRLHAVPRTRLENPKRLDEAGRALAFVGQSFPLETHVKTAVDPFFVERVEEQQRARAAAAVAATYVGRLRQRIDGAGTDWECLTADSDDEEGTGFEPLRDTVGNKRSWRAAAAATGAVLEAVDRVLSGRALNAFCAVRPPGHHAGVHLHCVGAVSNGFCLLNNVAVGALYARHQRGAAR---------------DVLCRTLDPGFLYCSMHAYGESSDGGPTVFPGTGGEDDAPHAHVLNLP 765
            RTL + D  CRLH      +E  +R   A   +       P    V+ +V   ++ R      A  + A +  YV  +R+R     T+   L    D+          DT GN+ +W A+ AA+ AVL+AVD V+SG A NA CAVRPPGHHAG  ++ +GA SNG+C+LN+ A+GA YA H+RG  R               DVL RT DP F+Y S+HA G        V+PG+G  +   H  VLNLP
Sbjct: 1403 RTLAIYDRRCRLHETKVYCMEQSRRAVAAAAVVEAAALRHPTRLWVERSVHEGYLGRAT----ALLSYAHSRVYVSAVRRRCLDLKTNATMLFGGEDE----------DTCGNRHTWDASLAASAAVLQAVDAVVSGEAKNALCAVRPPGHHAGASVNALGAESNGYCILNHAALGAKYAAHERGLQRVAVFDFDVHHGNGTEDVLARTCDPRFMYLSLHACGRD------VYPGSGKREVPDHPGVLNLP 1633          
BLAST of mRNA_P-wetherbeei_contig16322.1.1 vs. uniprot
Match: B8BX74_THAPS (Hist_deacetyl domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BX74_THAPS)

HSP 1 Score: 139 bits (349), Expect = 1.400e-33
Identity = 104/282 (36.88%), Postives = 134/282 (47.52%), Query Frame = 1
Query:   52 SGRTLLLTDGACRLHAVPRTRLENPKRLDEAGRALAFVGQSFPLETHVKTAVDPFFVERVEEQQRARAAAAVAATYVGRLRQRIDGAGTDWECLTADSDDEEGTGFEPLRDTVGNKRSWRAAAAATGAVLEAVDRVLSGRALNAFCAVRPPGHHAGVHLHCVGAVSNGFCLLNNVAVGALYAR--------------------HQRGAARDVLCRTLDPGFLYCSMHAYG---------ESSD-------GGPT---VFPGTGGEDDAPHAHVLNLPLGPQV 780
            +G T ++TD  C  H       E P RL  A +     G       H+ T V+  ++E  EE   A    A  A+Y+ RL+ RI     D E     S+D EG G +   DT G++ S+ AA     A L+A D V+ G+ +N FCA+RPPGHHAG  L  + AVSNGFCLLN  A  A YA                     H     +D+LC T DP FLY S+HA G         +S D       G  T   +FPG  G D +PH  VLN+PLG +V
Sbjct:  821 NGNTSVITDSRCNGHIGHSGAFERPVRLPAAIKGAKLAGAGSDPNIHLITTVEDHYLEIAEE---AIIPKAHQASYLKRLKSRIASIPAD-ETGVPLSEDSEGEGGD---DTKGSRGSYTAATVGVAAALKACDMVVGGKCVNVFCAIRPPGHHAGRELRPMKAVSNGFCLLNAAACAAFYAVTSPSQGGLGLRRVCVIDFDVHHGNGTQDILCSTYDPRFLYVSLHAGGADINGYDDEDSEDESRRLKPGSKTTEGIFPGRCG-DSSPHTGVLNIPLGQRV 1094          
BLAST of mRNA_P-wetherbeei_contig16322.1.1 vs. uniprot
Match: K0TPX8_THAOC (Hist_deacetyl domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPX8_THAOC)

HSP 1 Score: 134 bits (336), Expect = 7.570e-32
Identity = 94/282 (33.33%), Postives = 134/282 (47.52%), Query Frame = 1
Query:   52 SGRTLLLTDGACRLHAVPRTRLENPKRLDEAGRALAFVGQSFPLETHVKTAVDPFFVERVEEQQRARAAAAVAATYVGRLRQRIDGAGTDWECLTADSDDEEGTGFEPLRDTVGNKRSWRAAAAATGAVLEAVDRVLSGRALNAFCAVRPPGHHAGVHLHCVGAVSNGFCLLNNVAVGALYAR--------------------HQRGAARDVLCRTLDPGFLYCSMHAYGESSDG-------------------GPTVFPGTGGEDDAPHAHVLNLPLGPQV 780
            +G T +LTD  C  H       E   RL  A +A    G        + T+V+  +++  E+    +A      +Y+ RL+ +     +D E   A +DD +G G E   DT G++ S+ AA     A L+A + V+ G+ +N+FCA+RPPGHHAG+ L  + A+SNGFCL N  A  A++A                     H     +D+LC T DP FLY S+HA G   +G                     ++FPG  G D +PH  VLNLPLG QV
Sbjct:  843 NGTTAILTDSRCNGHISQNGSFERNVRLPAAIKATRLAGAGVSKNVPLITSVEDSYLDIAEKSVIPKAH---KISYIKRLKAKCASISSD-EFGVALTDDSDGEGGE---DTTGSRGSYMAAVIGVAASLKAAEMVVGGQCVNSFCAIRPPGHHAGLELRSMNAISNGFCLFNAAACAAIFATTPRSQGGLGLRRVCVIDFDVHHGNGTQDILCSTYDPRFLYVSLHAGGSEVNGYDIDEDDALFLGGYCGGKKQDSIFPGRCG-DFSPHEGVLNLPLGKQV 1116          
BLAST of mRNA_P-wetherbeei_contig16322.1.1 vs. uniprot
Match: A0A7S4IKT0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IKT0_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.280e-31
Identity = 96/281 (34.16%), Postives = 133/281 (47.33%), Query Frame = 1
Query:   52 SGRTLLLTDGACRLHAVPRTRLENPKRLDEAGRALAFVGQSFPLETHVKTAVDPFFVERVEEQQRARAAAAVAATYVGRLRQRIDGAGTDWECLTADSDDEEGTGFEPLRDTVGNKRSWRAAAAATGAVLEAVDRVLSGRALNAFCAVRPPGHHAGVHLHCVGAVSNGFCLLNNVAVGALYAR--------------------HQRGAARDVLCRTLDPGFLYCSMHA----------YGESSDGGPT--------VFPGTGGEDDAPHAHVLNLPLGPQV 780
            +G T ++TD  C  H       E   RL  A +     G        +   VD  ++E  EE+   +A     A+Y+ RL+ +I     D + +   +DD EG G E   DT+G++ S+ AA     A L+ VD ++ G+ +N FCA+RPPGHHAG  L  + A+SNGFCLLN  A  ALYA                     H     +D+LC T D  FLY S+HA           G++ DG           +FPG  G D +PH  VLN+PLG +V
Sbjct:   10 NGVTSVITDSRCNQHITASGSFERAVRLPAAIKGARKAGAGKKETIPLLYTVDQKYMELAEEEIIPKAH---KASYLKRLKAKIANLPADAKGMPL-TDDSEGEGGE---DTMGSRGSYTAAVLGVAAALQGVDMIVGGQCVNVFCAIRPPGHHAGRELRPMHAISNGFCLLNAAACAALYATAPQAEGGLGLKRVCIIDFDVHHGNGTQDILCSTHDSRFLYVSLHAGGAHINGYDDQGDAQDGHTVLGGGKNEGIFPGRCG-DTSPHEGVLNIPLGSKV 282          
BLAST of mRNA_P-wetherbeei_contig16322.1.1 vs. uniprot
Match: A0A7S2K2L8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2L8_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.550e-31
Identity = 102/285 (35.79%), Postives = 137/285 (48.07%), Query Frame = 1
Query:   55 GRTLLLTDGACRLHAVPRTRLENPKRLDEA--GRALAFVGQ-SFPLETHVKTAVDPFFVERVEEQQRARAAAAVAATYVGRLRQRIDGAGTDWECLTADSDDEEGTGFEPLRDTVGNKRSWRAAAAATGAVLEAVDRVLSGRALNAFCAVRPPGHHAGVHLHCVGAVSNGFCLLNNVAVGALYAR--------------------HQRGAARDVLCRTLDPGFLYCSMHAYG------ESSDGGPT--------------VFPGTGGEDDAPHAHVLNLPLGPQV 780
            G T +LTD  C  H       E   RL  A  G  LA  G  + PL   VK +    ++E VE+   ++A     A+Y+ +++ +I     D        D +E TG E   DT G++ S+ AA    GA ++AVD V+ G+  NAFCAVRPPGHHAG  L  + A+SNGFC+LN+ A  A++A                     H     +D+LC T D  FLY S+HA G      E SD   T              +FPG  G D +PH  VLN+PLG +V
Sbjct:  760 GVTAVLTDLRCNGHITANDSFERTVRLPAAIKGAKLAGAGSLNVPLVCKVKES----YIELVEKSILSKAH---NASYLRKMKSKIAAIPADVTGFPLTDDSDEDTGGE---DTKGSRGSFTAALTGVGAAIQAVDMVVGGQCANAFCAVRPPGHHAGKELRAMNAISNGFCILNSAACAAIFAVTPVSEGGRGLKRVVVIDFDVHHGNGTQDILCSTHDSRFLYVSVHAGGAHLNGYEDSDDSDTDEYSRRSLGGNKDGIFPGKCG-DTSPHPGVLNIPLGKKV 1033          
BLAST of mRNA_P-wetherbeei_contig16322.1.1 vs. uniprot
Match: A0A7S3QDP7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDP7_9STRA)

HSP 1 Score: 132 bits (331), Expect = 3.490e-31
Identity = 95/281 (33.81%), Postives = 134/281 (47.69%), Query Frame = 1
Query:   52 SGRTLLLTDGACRLHAVPRTRLENPKRLDEAGRALAFVGQSFPLETHVKTAVDPFFVERVEEQQRARAAAAVAATYVGRLRQRIDGAGTDWECLTADSDDEEGTGFEPLRDTVGNKRSWRAAAAATGAVLEAVDRVLSGRALNAFCAVRPPGHHAGVHLHCVGAVSNGFCLLNNVAVGALYAR--------------------HQRGAARDVLCRTLDPGFLYCSMHAYG--------ESSDGG----------PTVFPGTGGEDDAPHAHVLNLPLGPQV 780
            +G T ++TD  C  H       E   RL  A +     G        + T V+  ++ +VE++       A  ++Y+ R++ ++     D + +   +DD +G G E   DT+G++ S+ AA     A L+ VD ++ G+ +NAFCAVRPPGHHAG  L  + A+SNGFCLLN  A  ALYA                     H     +D+LC T DP F Y S HA G        +SSD G            +FPG  G D  PH  VLN+PLG +V
Sbjct:  802 NGVTAVITDSRCNEHITANGSFERAVRLPAALKGAKMAGAGSRPSMPLITKVEDEYLSKVEDKI---LPMAHKSSYLKRIKDKVSSLPQDAKGVPL-TDDSDGEGGE---DTMGSRGSFTAAVTGVAAALKGVDMIIEGKCVNAFCAVRPPGHHAGRELRPMNAMSNGFCLLNTAASAALYAATPRSQGGLGLNRVCVIDIDVHHGNGTQDILCSTHDPRFFYVSTHAGGSHINGYEDDSSDDGLRRSLNMNKNEGIFPGRCG-DTNPHPGVLNVPLGKKV 1074          
BLAST of mRNA_P-wetherbeei_contig16322.1.1 vs. uniprot
Match: B7GE87_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GE87_PHATC)

HSP 1 Score: 130 bits (327), Expect = 1.180e-30
Identity = 95/282 (33.69%), Postives = 130/282 (46.10%), Query Frame = 1
Query:   55 GRTLLLTDGACRLHAVPRTRLENPKRLDEAGRALAFVGQSFPLETHVKTAVDPFFVERVEEQQRARAAAAVAATYVGRLRQRIDGAGTDWECLTADSDDEEGTGFEPLRDTVGNKRSWRAAAAATGAVLEAVDRVLSGRALNAFCAVRPPGHHAGVHLHCVGAVSNGFCLLNNVAVGALYAR--------------------HQRGAARDVLCRTLDPGFLYCSMHAYGESSDG--------------------GPTVFPGTGGEDDAPHAHVLNLPLGPQV 780
            G + + TD  C  H       E   RL  A +     G        + +AVD  +++ VE     +A     + Y+ R+R R   A  + E L   ++D EG G     DT G+K +W AA  A  A + A D ++ G + NAFCA RPPGHHAG  LH + AVSNGFC+LN VA  A++A                     H     +D+LC T +P FLY S+HA G   +G                    G  ++PG  G D +PH  VLN+PLG +V
Sbjct:  736 GISTVFTDTRCNGHITSNDCFERAVRLPAALKGAKLAGAGSDENCRLISAVDESYLKYVEHTLLPKAH---DSAYLKRMRGRCAAAVNETEILVL-TEDSEGNGGS---DTHGSKGTWAAAVTAVAAAVAAADMIVGGESTNAFCATRPPGHHAGKGLHPMKAVSNGFCVLNAVACAAIHATSSILEGGLGLKRVCIIDFDVHHGNGTQDILCSTFNPHFLYVSIHAGGPHVNGVAIDDDPDHELHELASNPKQGGGIYPGRCG-DTSPHKGVLNIPLGSKV 1009          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16322.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3L8_9PHAE7.920e-8454.27Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D7G6J0_ECTSI1.330e-7555.91CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8J2SBW9_9STRA2.690e-3739.84Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y5Z7_AURAN1.480e-3537.85Hist_deacetyl domain-containing protein n=1 Tax=Au... [more]
B8BX74_THAPS1.400e-3336.88Hist_deacetyl domain-containing protein n=1 Tax=Th... [more]
K0TPX8_THAOC7.570e-3233.33Hist_deacetyl domain-containing protein n=1 Tax=Th... [more]
A0A7S4IKT0_9STRA1.280e-3134.16Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2K2L8_9STRA2.550e-3135.79Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3QDP7_9STRA3.490e-3133.81Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B7GE87_PHATC1.180e-3033.69Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16322contigP-wetherbeei_contig16322:151..1389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6J0
PFAMsAnk,Hist_deacetyl
Model size780
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue2.19e-76
EggNOG OGsCOG0123@1|root,KOG1343@2759|Eukaryota
DescriptionNAD-dependent histone deacetylase activity (H3-K14 specific)
Cds size780
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.476966-CDS-P-wetherbeei_contig16322:150..4261683186083.476966-CDS-P-wetherbeei_contig16322:150..426Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16322 151..426 +
1683186083.4893272-CDS-P-wetherbeei_contig16322:840..11851683186083.4893272-CDS-P-wetherbeei_contig16322:840..1185Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16322 841..1185 +
1683186083.5004458-CDS-P-wetherbeei_contig16322:1230..13891683186083.5004458-CDS-P-wetherbeei_contig16322:1230..1389Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16322 1231..1389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16322.1.1prot_P-wetherbeei_contig16322.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16322 151..1389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16322.1.1

>prot_P-wetherbeei_contig16322.1.1 ID=prot_P-wetherbeei_contig16322.1.1|Name=mRNA_P-wetherbeei_contig16322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
VRGEWLLLWGALKRLCASGRTLLLTDGACRLHAVPRTRLENPKRLDEAGR
ALAFVGQSFPLETHVKTAVDPFFVERVEEQQRARAAAAVAATYVGRLRQR
IDGAGTDWECLTADSDDEEGTGFEPLRDTVGNKRSWRAAAAATGAVLEAV
DRVLSGRALNAFCAVRPPGHHAGVHLHCVGAVSNGFCLLNNVAVGALYAR
HQRGAARDVLCRTLDPGFLYCSMHAYGESSDGGPTVFPGTGGEDDAPHAH
VLNLPLGPQV
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mRNA from alignment at P-wetherbeei_contig16322:151..1389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16322.1.1 ID=mRNA_P-wetherbeei_contig16322.1.1|Name=mRNA_P-wetherbeei_contig16322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1239bp|location=Sequence derived from alignment at P-wetherbeei_contig16322:151..1389+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCGTGGCGAGTGGCTGCTCCTGTGGGGTGCCCTCAAGCGCCTGTGCGC ATCCGGTCGGACCCTGCTACTGACAGATGGCGCCTGCCGACTCCACGCCG TGCCCCGGACGCGGCTCGAGAACCCGAAGCGTCTGGACGAGGCGGGACGG GCGCTGGCGTTCGTCGGGCAGAGCTTTCCGCTGGAGACGCACGTCAAGAC GGCCGTCGACCCGTTCTTCGTCGAACGGGTGGAGGAGCAGCAGCGGGCGA GAGCGGCCGCCGCCGTCGCGGCGACGGTGGCGGCCGCCGCGGGCCGGGAC AGCCTGGCGGAGGGCGAGGAGGAATCCGACAGCAGCAGCGACGACGGCGA TGGCGGCGCAGGCCCCGAAGCTAATGAGATGAATGGCGCTGCCGATGGCG CTTCCAACGGCGCTGCTGCCAACGGTGGTGGCAGCGGCGCCAGCAACGCC GGTGGGGATGGCGCTGCAGCCAGCGACGGCGGCTTAGCGGACGCCGGCGG CCTCAACGGCGTCGTGTCGTCCGTTGAATCGGCGGCGACGGCGCTGACGG CAAAGCTATCGACCGCCCCCGTGCCGCTGCTGCTACCGCCCGTCGCGTTC GACGGACATGACACGGAGGGCTCCACAGGGGCAGCGGACCCGTCGACGCT GCGTGGGCTGGGCTTCCTCCCGTTCGCGCACGACATGCAGTACGTGGGGC GGTTGCGGCAGCGCATTGACGGCGCCGGCACCGACTGGGAGTGCCTGACG GCCGACTCGGACGATGAAGAGGGGACAGGCTTTGAGCCGCTACGCGATAC GGTCGGCAACAAACGGTCGTGGCGGGCGGCGGCGGCCGCTACCGGCGCCG TACTGGAGGCCGTGGACCGGGTGCTGTCTGGCCGCGCCCTGAATGCGTTC TGCGCGGTCCGACCGCCGGGCCACCACGCAGGCGTGCATCTGCATTGCGT GGGCGCCGTCAGCAACGGCTTCTGCCTGCTTAACAACGTCGCCGTCGGCG CGCTCTACGCGCGGCACCAGCGCGGCGCCGCCCGCGTTGCCGTCGTCGAC TTCGACGTGCATCACGGCAACGGAACCCAGGACGTCCTGTGCCGCACGCT TGACCCGGGGTTCCTGTACTGCTCGATGCATGCCTATGGGGAGAGCAGCG ACGGCGGGCCGACGGTGTTTCCTGGAACGGGCGGTGAAGACGACGCGCCG CACGCCCACGTGCTCAACCTCCCGCTGGGCCCGCAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16322:151..1389+

>mRNA_P-wetherbeei_contig16322.1.1 ID=mRNA_P-wetherbeei_contig16322.1.1|Name=mRNA_P-wetherbeei_contig16322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig16322:151..1389+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCGTGGCGAGTGGCTGCTCCTGTGGGGTGCCCTCAAGCGCCTGTGCGC
ATCCGGTCGGACCCTGCTACTGACAGATGGCGCCTGCCGACTCCACGCCG
TGCCCCGGACGCGGCTCGAGAACCCGAAGCGTCTGGACGAGGCGGGACGG
GCGCTGGCGTTCGTCGGGCAGAGCTTTCCGCTGGAGACGCACGTCAAGAC
GGCCGTCGACCCGTTCTTCGTCGAACGGGTGGAGGAGCAGCAGCGGGCGA
GAGCGGCCGCCGCCGTCGCGGCGACGTACGTGGGGCGGTTGCGGCAGCGC
ATTGACGGCGCCGGCACCGACTGGGAGTGCCTGACGGCCGACTCGGACGA
TGAAGAGGGGACAGGCTTTGAGCCGCTACGCGATACGGTCGGCAACAAAC
GGTCGTGGCGGGCGGCGGCGGCCGCTACCGGCGCCGTACTGGAGGCCGTG
GACCGGGTGCTGTCTGGCCGCGCCCTGAATGCGTTCTGCGCGGTCCGACC
GCCGGGCCACCACGCAGGCGTGCATCTGCATTGCGTGGGCGCCGTCAGCA
ACGGCTTCTGCCTGCTTAACAACGTCGCCGTCGGCGCGCTCTACGCGCGG
CACCAGCGCGGCGCCGCCCGCGACGTCCTGTGCCGCACGCTTGACCCGGG
GTTCCTGTACTGCTCGATGCATGCCTATGGGGAGAGCAGCGACGGCGGGC
CGACGGTGTTTCCTGGAACGGGCGGTGAAGACGACGCGCCGCACGCCCAC
GTGCTCAACCTCCCGCTGGGCCCGCAGGTG
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