mRNA_P-wetherbeei_contig1632.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1632.2.1
Unique NamemRNA_P-wetherbeei_contig1632.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1632.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1632contigP-wetherbeei_contig1632:1603..2960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1358
Hectar predicted targeting categoryother localisation
Exons1
Cds size1326
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.2867143-UTR-P-wetherbeei_contig1632:1602..16071683186083.2867143-UTR-P-wetherbeei_contig1632:1602..1607Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1632 1603..1607 +
1683186083.3024442-UTR-P-wetherbeei_contig1632:2933..29601683186083.3024442-UTR-P-wetherbeei_contig1632:2933..2960Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1632 2934..2960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.2948737-CDS-P-wetherbeei_contig1632:1607..29331683186083.2948737-CDS-P-wetherbeei_contig1632:1607..2933Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1632 1608..2933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1632.2.1prot_P-wetherbeei_contig1632.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1632 1608..2933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1632.2.1

>prot_P-wetherbeei_contig1632.2.1 ID=prot_P-wetherbeei_contig1632.2.1|Name=mRNA_P-wetherbeei_contig1632.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=442bp
MSTFTPLLEEFAAQRDADGALGVLAALETSGATANAFAFRLAIAACEDSS
VRSYGHGEDSNRHQDGGGGKGGGSSSFGGSNGGVSSENGSGDNSSGVSSS
DADEFSAAADDAGSNASGGDPRWEDAVALYHRCAAAGLRPGVEVLLPLAR
VLEAAGRPAEMDAVLAAAVDAGDVALWGPATGALDLHFMNVPLSQSAVRL
ALADMVDAARILYGDGGGDGHGKGGSSSSSNSGNSSGSSGSSGGVSRRRV
RMHDSREDMVIVTGRGRGTRGATGGGVLGPRTREFLATGVRPPLAVEAVE
RNEGRMVVGAAQLLQYVAARLAESGPPAAAAAAAAAARSAAARRDGRSEA
ECFAGAGAGASSSAALAGSGETATAAAAVAMDATAEAREAVAAVDSAAAA
ERGADDAGSAFVPADVAEWPGRVKLSSESETPTAERRYGQP*
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mRNA from alignment at P-wetherbeei_contig1632:1603..2960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1632.2.1 ID=mRNA_P-wetherbeei_contig1632.2.1|Name=mRNA_P-wetherbeei_contig1632.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1358bp|location=Sequence derived from alignment at P-wetherbeei_contig1632:1603..2960+ (Phaeothamnion wetherbeei SAG_119_79)
CGAGGATGTCGACCTTCACGCCGCTGCTCGAAGAGTTCGCGGCGCAGCGG
GACGCGGACGGCGCGCTGGGCGTGCTGGCGGCGCTGGAGACATCGGGGGC
GACGGCCAATGCGTTTGCGTTCCGCCTCGCAATTGCGGCTTGCGAGGACA
GCAGCGTGCGGAGCTACGGCCACGGCGAAGACAGCAATCGACATCAGGAT
GGTGGCGGCGGCAAAGGCGGTGGCAGCAGCAGCTTTGGCGGCAGTAACGG
CGGCGTTAGCAGCGAAAACGGCAGCGGCGACAACAGCAGCGGCGTCAGCA
GCAGCGACGCTGACGAGTTCTCTGCCGCTGCCGACGACGCTGGCAGCAAT
GCCAGCGGCGGCGACCCTCGGTGGGAGGACGCCGTAGCGCTCTACCACCG
GTGCGCGGCGGCGGGGCTGCGGCCGGGCGTCGAGGTGCTGCTGCCGCTAG
CGCGTGTGTTGGAGGCAGCTGGGCGGCCTGCGGAGATGGACGCGGTGCTC
GCCGCTGCCGTCGACGCCGGCGACGTGGCGCTGTGGGGCCCCGCGACGGG
CGCCCTCGATCTGCATTTCATGAACGTGCCGCTGTCACAGTCCGCTGTCC
GCCTCGCTCTCGCCGACATGGTCGATGCTGCCAGGATTCTCTACGGAGAT
GGCGGCGGCGACGGCCACGGCAAGGGCGGCAGCAGCAGCAGCAGTAACAG
CGGTAACAGCAGCGGCAGCAGTGGCAGCAGCGGCGGCGTGAGTCGCCGCC
GGGTGCGAATGCACGACTCACGTGAAGACATGGTGATTGTGACGGGGCGG
GGCCGGGGCACGCGCGGCGCGACAGGCGGTGGGGTCCTCGGGCCGCGGAC
GCGAGAGTTCCTGGCGACGGGGGTGCGGCCGCCGCTGGCGGTGGAAGCGG
TGGAGCGAAACGAGGGACGAATGGTAGTCGGCGCCGCGCAGCTGCTCCAG
TACGTCGCCGCGCGCCTCGCTGAGTCGGGTCCGCCTGCCGCAGCGGCGGC
CGCGGCGGCGGCGGCAAGAAGCGCCGCCGCGAGAAGGGATGGCCGCTCTG
AAGCGGAGTGCTTCGCTGGCGCTGGCGCCGGGGCAAGTAGTAGTGCGGCA
TTGGCCGGATCAGGCGAGACGGCGACGGCAGCGGCAGCGGTGGCAATGGA
CGCGACGGCCGAGGCAAGAGAAGCGGTTGCTGCGGTCGATAGCGCCGCGG
CAGCGGAGAGAGGCGCTGACGATGCGGGCAGTGCCTTTGTCCCGGCGGAC
GTTGCCGAATGGCCAGGACGAGTAAAGCTTTCGAGCGAGAGCGAGACGCC
CACGGCAGAGCGGCGGTACGGGCAGCCTTGAAAGACTAAAAGAAAACCGC
ATGCCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1632:1603..2960+

>mRNA_P-wetherbeei_contig1632.2.1 ID=mRNA_P-wetherbeei_contig1632.2.1|Name=mRNA_P-wetherbeei_contig1632.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1326bp|location=Sequence derived from alignment at P-wetherbeei_contig1632:1603..2960+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGACCTTCACGCCGCTGCTCGAAGAGTTCGCGGCGCAGCGGGACGC
GGACGGCGCGCTGGGCGTGCTGGCGGCGCTGGAGACATCGGGGGCGACGG
CCAATGCGTTTGCGTTCCGCCTCGCAATTGCGGCTTGCGAGGACAGCAGC
GTGCGGAGCTACGGCCACGGCGAAGACAGCAATCGACATCAGGATGGTGG
CGGCGGCAAAGGCGGTGGCAGCAGCAGCTTTGGCGGCAGTAACGGCGGCG
TTAGCAGCGAAAACGGCAGCGGCGACAACAGCAGCGGCGTCAGCAGCAGC
GACGCTGACGAGTTCTCTGCCGCTGCCGACGACGCTGGCAGCAATGCCAG
CGGCGGCGACCCTCGGTGGGAGGACGCCGTAGCGCTCTACCACCGGTGCG
CGGCGGCGGGGCTGCGGCCGGGCGTCGAGGTGCTGCTGCCGCTAGCGCGT
GTGTTGGAGGCAGCTGGGCGGCCTGCGGAGATGGACGCGGTGCTCGCCGC
TGCCGTCGACGCCGGCGACGTGGCGCTGTGGGGCCCCGCGACGGGCGCCC
TCGATCTGCATTTCATGAACGTGCCGCTGTCACAGTCCGCTGTCCGCCTC
GCTCTCGCCGACATGGTCGATGCTGCCAGGATTCTCTACGGAGATGGCGG
CGGCGACGGCCACGGCAAGGGCGGCAGCAGCAGCAGCAGTAACAGCGGTA
ACAGCAGCGGCAGCAGTGGCAGCAGCGGCGGCGTGAGTCGCCGCCGGGTG
CGAATGCACGACTCACGTGAAGACATGGTGATTGTGACGGGGCGGGGCCG
GGGCACGCGCGGCGCGACAGGCGGTGGGGTCCTCGGGCCGCGGACGCGAG
AGTTCCTGGCGACGGGGGTGCGGCCGCCGCTGGCGGTGGAAGCGGTGGAG
CGAAACGAGGGACGAATGGTAGTCGGCGCCGCGCAGCTGCTCCAGTACGT
CGCCGCGCGCCTCGCTGAGTCGGGTCCGCCTGCCGCAGCGGCGGCCGCGG
CGGCGGCGGCAAGAAGCGCCGCCGCGAGAAGGGATGGCCGCTCTGAAGCG
GAGTGCTTCGCTGGCGCTGGCGCCGGGGCAAGTAGTAGTGCGGCATTGGC
CGGATCAGGCGAGACGGCGACGGCAGCGGCAGCGGTGGCAATGGACGCGA
CGGCCGAGGCAAGAGAAGCGGTTGCTGCGGTCGATAGCGCCGCGGCAGCG
GAGAGAGGCGCTGACGATGCGGGCAGTGCCTTTGTCCCGGCGGACGTTGC
CGAATGGCCAGGACGAGTAAAGCTTTCGAGCGAGAGCGAGACGCCCACGG
CAGAGCGGCGGTACGGGCAGCCTTGA
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