mRNA_P-wetherbeei_contig1632.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1632.1.1
Unique NamemRNA_P-wetherbeei_contig1632.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1632.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1632contigP-wetherbeei_contig1632:2..1568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1569
Hectar predicted targeting categoryother localisation
Exons1
Cds size1140
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.2477164-UTR-P-wetherbeei_contig1632:1..4281683186083.2477164-UTR-P-wetherbeei_contig1632:1..428Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1632 2..428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.2587562-CDS-P-wetherbeei_contig1632:428..15681683186083.2587562-CDS-P-wetherbeei_contig1632:428..1568Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1632 429..1568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1632.1.1prot_P-wetherbeei_contig1632.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1632 429..1568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1632.1.1

>prot_P-wetherbeei_contig1632.1.1 ID=prot_P-wetherbeei_contig1632.1.1|Name=mRNA_P-wetherbeei_contig1632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=380bp
MPSGIVSSERHTANGSVVSLLERRPLETHSSHSVTLPPLPSFLFHCSCFT
FLPLSPLFFNRFLLPFPFLPTFFLLSPSLAPSLRKKALMRGYARRGMSNR
AFELLKRAKYRGVAVDVSMHNLCITACGMAGKWRNACDVIPAMRRAGIAP
NAASYAAAIAACAAAMRSKPGKRLPNESPGGDGGSDVGGGRGAASFSRNV
IRRGSNDGASAAARSDGDGSNDSDADNDDEDAESATAAEEGLVAAGVNDD
GSTGSAGRIDSPATAAATGGEAFSTASDGSPKTAAAPKQGSRVIAEFINA
ARRAVALLAEMRAAGVPVDGGTFTSLMQVHGAAGDTVGAAATLADMAAAG
IHPTPRARDALVEAHARAGDLPGAWAAIGA
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mRNA from alignment at P-wetherbeei_contig1632:2..1568+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1632.1.1 ID=mRNA_P-wetherbeei_contig1632.1.1|Name=mRNA_P-wetherbeei_contig1632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1567bp|location=Sequence derived from alignment at P-wetherbeei_contig1632:2..1568+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCAAAGACGTACAAGGTGAGCCGAGTCGGGAGGAGGGGAGGATGGGGA
AAGTGTGATAAGTCAGAAAGATTTTAAAGTTGTGAATGCGGTGCTTCTCC
ACATTTTAAAGCTGCAAACTCTTCTTCTGCCTTTGTTGGATCCGTGCGCC
CCTCGTCTGTACTTGAGTGTGGGCGAGTGCTGTTGTTCAAGGGTATCTCG
TCCAAACCCTTTTGCATGCTTTGTGGCAGTCAGGCAACTTGGCCTTGGGT
TGCGGCGTTCTTGTCAGTTGTATTTTGTCATATACCTTGCTATTTCTGCT
TTAGCGACCATGGCAAATATTATGTGGGCCCTCGGAGCGTCGTGCGAGAG
ACCGCCCTTGCCTCACACCTTACTGATCAGTCTATACCTTTCTAGCTGCT
GGATCTGCTTTCCTTGTGCTTTGTTTTATGCCTTCAGGCATAGTAAGTTC
AGAGCGCCACACGGCGAATGGCTCTGTGGTCTCACTGCTAGAACGGCGTC
CGCTTGAAACACACTCGTCTCACAGTGTTACCTTGCCACCTCTGCCGTCC
TTTCTTTTCCACTGCTCGTGCTTCACTTTCCTGCCCCTCTCGCCTCTTTT
TTTCAATCGTTTCCTTTTGCCTTTCCCGTTCCTGCCTACTTTCTTCCTCC
TGTCTCCTTCCCTTGCCCCCTCCCTACGGAAAAAGGCGCTGATGCGCGGT
TACGCCCGGCGCGGAATGTCGAACCGCGCCTTCGAGCTGCTGAAGCGGGC
TAAATACCGCGGCGTCGCTGTCGACGTGAGCATGCACAACCTGTGCATCA
CAGCGTGCGGCATGGCCGGCAAGTGGCGCAACGCCTGCGACGTCATCCCG
GCGATGAGACGCGCCGGTATCGCCCCCAACGCCGCATCGTACGCCGCGGC
GATCGCCGCCTGCGCCGCCGCCATGCGGTCCAAACCCGGGAAGCGCCTTC
CGAACGAGAGCCCCGGCGGCGACGGTGGCAGCGATGTCGGCGGTGGTCGT
GGTGCTGCAAGCTTCAGCAGGAATGTTATTAGAAGAGGGAGCAATGACGG
CGCTTCGGCCGCCGCTAGGAGTGATGGCGACGGTAGTAACGACAGCGACG
CGGATAACGACGACGAAGACGCTGAAAGCGCCACTGCCGCCGAGGAAGGT
TTGGTTGCTGCTGGCGTCAATGACGACGGCAGCACTGGCAGCGCCGGAAG
AATAGACAGTCCCGCCACCGCTGCGGCCACTGGCGGCGAGGCCTTTTCGA
CCGCATCGGACGGAAGCCCCAAGACCGCCGCCGCCCCGAAGCAGGGGTCG
CGGGTCATCGCCGAGTTCATCAACGCGGCGCGGCGCGCAGTGGCGCTGCT
GGCGGAGATGCGCGCCGCGGGCGTGCCCGTCGACGGCGGCACCTTCACCT
CGCTGATGCAGGTACATGGCGCCGCCGGCGACACGGTCGGCGCCGCCGCC
ACGCTCGCCGACATGGCCGCCGCAGGGATCCACCCCACGCCGCGGGCCCG
CGACGCGCTCGTGGAGGCGCACGCGCGGGCGGGCGACCTGCCGGGGGCGT
GGGCGGCGATCGGTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1632:2..1568+

>mRNA_P-wetherbeei_contig1632.1.1 ID=mRNA_P-wetherbeei_contig1632.1.1|Name=mRNA_P-wetherbeei_contig1632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1140bp|location=Sequence derived from alignment at P-wetherbeei_contig1632:2..1568+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTTCAGGCATAGTAAGTTCAGAGCGCCACACGGCGAATGGCTCTGT
GGTCTCACTGCTAGAACGGCGTCCGCTTGAAACACACTCGTCTCACAGTG
TTACCTTGCCACCTCTGCCGTCCTTTCTTTTCCACTGCTCGTGCTTCACT
TTCCTGCCCCTCTCGCCTCTTTTTTTCAATCGTTTCCTTTTGCCTTTCCC
GTTCCTGCCTACTTTCTTCCTCCTGTCTCCTTCCCTTGCCCCCTCCCTAC
GGAAAAAGGCGCTGATGCGCGGTTACGCCCGGCGCGGAATGTCGAACCGC
GCCTTCGAGCTGCTGAAGCGGGCTAAATACCGCGGCGTCGCTGTCGACGT
GAGCATGCACAACCTGTGCATCACAGCGTGCGGCATGGCCGGCAAGTGGC
GCAACGCCTGCGACGTCATCCCGGCGATGAGACGCGCCGGTATCGCCCCC
AACGCCGCATCGTACGCCGCGGCGATCGCCGCCTGCGCCGCCGCCATGCG
GTCCAAACCCGGGAAGCGCCTTCCGAACGAGAGCCCCGGCGGCGACGGTG
GCAGCGATGTCGGCGGTGGTCGTGGTGCTGCAAGCTTCAGCAGGAATGTT
ATTAGAAGAGGGAGCAATGACGGCGCTTCGGCCGCCGCTAGGAGTGATGG
CGACGGTAGTAACGACAGCGACGCGGATAACGACGACGAAGACGCTGAAA
GCGCCACTGCCGCCGAGGAAGGTTTGGTTGCTGCTGGCGTCAATGACGAC
GGCAGCACTGGCAGCGCCGGAAGAATAGACAGTCCCGCCACCGCTGCGGC
CACTGGCGGCGAGGCCTTTTCGACCGCATCGGACGGAAGCCCCAAGACCG
CCGCCGCCCCGAAGCAGGGGTCGCGGGTCATCGCCGAGTTCATCAACGCG
GCGCGGCGCGCAGTGGCGCTGCTGGCGGAGATGCGCGCCGCGGGCGTGCC
CGTCGACGGCGGCACCTTCACCTCGCTGATGCAGGTACATGGCGCCGCCG
GCGACACGGTCGGCGCCGCCGCCACGCTCGCCGACATGGCCGCCGCAGGG
ATCCACCCCACGCCGCGGGCCCGCGACGCGCTCGTGGAGGCGCACGCGCG
GGCGGGCGACCTGCCGGGGGCGTGGGCGGCGATCGGTGCG
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