mRNA_P-wetherbeei_contig163.16.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig163.16.1
Unique NamemRNA_P-wetherbeei_contig163.16.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig163.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig163contigP-wetherbeei_contig163:11499..12475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size860
Hectar predicted targeting categoryother localisation
Exons2
Cds size855
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.3859422-CDS-P-wetherbeei_contig163:11498..118061683186082.3859422-CDS-P-wetherbeei_contig163:11498..11806Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig163 11499..11806 -
1683186082.3970304-CDS-P-wetherbeei_contig163:11923..124701683186082.3970304-CDS-P-wetherbeei_contig163:11923..12470Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig163 11924..12470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.4065309-UTR-P-wetherbeei_contig163:12470..124751683186082.4065309-UTR-P-wetherbeei_contig163:12470..12475Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig163 12471..12475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig163.16.1prot_P-wetherbeei_contig163.16.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig163 11499..12470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig163.16.1

>prot_P-wetherbeei_contig163.16.1 ID=prot_P-wetherbeei_contig163.16.1|Name=mRNA_P-wetherbeei_contig163.16.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=285bp
MPSPALPPTGYAAAATGGSNGNWSSAKSKLTVPDRPCDRCIKVFPNAKDR
MHFRRLCPTNAGHQANTLKKEHPKRSQEDINKRWASIKAKHPHAVRCPKH
PQGGHSADRCHTDSPTNGVVRAVAPACGNAGGPPPAPSQTGMPHPGSDTC
PPSEHSMGFACAAKSRPKTPVATSNCFSILGEAQSDTKVATGISDILYLK
NPKRFIIDVAHALDAPLNAKRPKAVQPEPAHPEIMLSDDGMGVPGGIGYG
NRHIRKDSSDELDYEADEMEYEFRDVPSDNTKLSP
back to top

mRNA from alignment at P-wetherbeei_contig163:11499..12475-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig163.16.1 ID=mRNA_P-wetherbeei_contig163.16.1|Name=mRNA_P-wetherbeei_contig163.16.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=977bp|location=Sequence derived from alignment at P-wetherbeei_contig163:11499..12475- (Phaeothamnion wetherbeei SAG_119_79)
TTAACATGCCGTCCCCGGCTCTACCTCCAACTGGCTATGCCGCCGCTGCC
ACCGGCGGATCGAACGGCAACTGGAGCTCAGCAAAGAGCAAGCTCACCGT
CCCTGACCGGCCATGCGACCGGTGCATCAAAGTTTTCCCAAACGCGAAAG
ACCGCATGCACTTCCGGCGCCTCTGCCCAACAAACGCAGGTCACCAAGCG
AACACTCTAAAGAAAGAGCACCCTAAGCGGTCCCAAGAGGACATCAACAA
GCGCTGGGCAAGCATCAAGGCTAAGCATCCACACGCTGTTCGCTGCCCCA
AGCACCCGCAAGGCGGCCACTCCGCCGACCGCTGCCACACCGACTCGCCC
ACAAACGGCGTTGTACGAGCCGTAGCTCCGGCCTGCGGCAATGCTGGGGG
GCCCCCGCCTGCCCCATCTCAAACCGGCATGCCACACCCGGGCTCTGACA
CTTGCCCACCATCCGAGCATTCGATGGGTTTTGCCTGCGCCGCAAAATCC
CGACCGAAAACGCCCGTCGCAACAAGCAACTGCTTCTCAATCCTTGGCGA
AGGTACGCTCCGCCGTAACACAAATTTCTCCAACCTAACCCGGCTGATAA
CCGACCAAAACATAACGCAATTCAAAGACGTTCCCCCCGTCCCCACCCAT
TTTTCGAAATTTTTGCCAGCTCAGTCTGACACCAAAGTCGCTACTGGCAT
CAGCGACATTTTGTACTTGAAGAACCCCAAGAGGTTCATCATCGATGTCG
CCCACGCCCTCGACGCGCCGCTGAACGCCAAGCGTCCCAAGGCGGTGCAG
CCAGAGCCCGCACACCCTGAGATCATGCTCTCTGATGATGGCATGGGGGT
TCCTGGCGGCATCGGATATGGCAACCGGCACATTCGAAAAGACTCCAGCG
ATGAACTCGACTATGAGGCTGACGAGATGGAGTATGAATTCAGAGACGTG
CCTAGCGATAATACAAAACTTTCCCCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig163:11499..12475-

>mRNA_P-wetherbeei_contig163.16.1 ID=mRNA_P-wetherbeei_contig163.16.1|Name=mRNA_P-wetherbeei_contig163.16.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=855bp|location=Sequence derived from alignment at P-wetherbeei_contig163:11499..12475- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCCCCGGCTCTACCTCCAACTGGCTATGCCGCCGCTGCCACCGG
CGGATCGAACGGCAACTGGAGCTCAGCAAAGAGCAAGCTCACCGTCCCTG
ACCGGCCATGCGACCGGTGCATCAAAGTTTTCCCAAACGCGAAAGACCGC
ATGCACTTCCGGCGCCTCTGCCCAACAAACGCAGGTCACCAAGCGAACAC
TCTAAAGAAAGAGCACCCTAAGCGGTCCCAAGAGGACATCAACAAGCGCT
GGGCAAGCATCAAGGCTAAGCATCCACACGCTGTTCGCTGCCCCAAGCAC
CCGCAAGGCGGCCACTCCGCCGACCGCTGCCACACCGACTCGCCCACAAA
CGGCGTTGTACGAGCCGTAGCTCCGGCCTGCGGCAATGCTGGGGGGCCCC
CGCCTGCCCCATCTCAAACCGGCATGCCACACCCGGGCTCTGACACTTGC
CCACCATCCGAGCATTCGATGGGTTTTGCCTGCGCCGCAAAATCCCGACC
GAAAACGCCCGTCGCAACAAGCAACTGCTTCTCAATCCTTGGCGAAGCTC
AGTCTGACACCAAAGTCGCTACTGGCATCAGCGACATTTTGTACTTGAAG
AACCCCAAGAGGTTCATCATCGATGTCGCCCACGCCCTCGACGCGCCGCT
GAACGCCAAGCGTCCCAAGGCGGTGCAGCCAGAGCCCGCACACCCTGAGA
TCATGCTCTCTGATGATGGCATGGGGGTTCCTGGCGGCATCGGATATGGC
AACCGGCACATTCGAAAAGACTCCAGCGATGAACTCGACTATGAGGCTGA
CGAGATGGAGTATGAATTCAGAGACGTGCCTAGCGATAATACAAAACTTT
CCCCT
back to top