mRNA_P-wetherbeei_contig16290.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16290.1.1
Unique NamemRNA_P-wetherbeei_contig16290.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16290.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16290contigP-wetherbeei_contig16290:301..1029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size494
Hectar predicted targeting categoryother localisation
Exons3
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.103679-CDS-P-wetherbeei_contig16290:300..4811683186082.103679-CDS-P-wetherbeei_contig16290:300..481Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16290 301..481 -
1683186082.1153305-CDS-P-wetherbeei_contig16290:506..5341683186082.1153305-CDS-P-wetherbeei_contig16290:506..534Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16290 507..534 -
1683186082.1242893-CDS-P-wetherbeei_contig16290:745..8481683186082.1242893-CDS-P-wetherbeei_contig16290:745..848Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16290 746..848 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186082.1331117-UTR-P-wetherbeei_contig16290:848..10291683186082.1331117-UTR-P-wetherbeei_contig16290:848..1029Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16290 849..1029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16290.1.1prot_P-wetherbeei_contig16290.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16290 301..848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16290.1.1

>prot_P-wetherbeei_contig16290.1.1 ID=prot_P-wetherbeei_contig16290.1.1|Name=mRNA_P-wetherbeei_contig16290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MAGNATAMRQSCLAAPSTTSMQMNCGMTVTATVPEPEQEESRDEPSQVVR
AEDAEKKPRACRFPSVAWVANAGTIASSTAPGALMRQPRPGSFVSEPATK
QSAG
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mRNA from alignment at P-wetherbeei_contig16290:301..1029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16290.1.1 ID=mRNA_P-wetherbeei_contig16290.1.1|Name=mRNA_P-wetherbeei_contig16290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig16290:301..1029- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCTCAACGACGCTGCGGTAGCCCTCCTAGTTGCCGGCAAGAATAGT
CAGGACCTTCAGTATCCGTTCTACAGGAACTTTATCATCTTCCACGCCGA
AGCTGGAAGAATGGCCGGCAGCGCCGCGGTCGCCCCGGCCGCCACGAGCC
GCTTTGCGATGGCCGCGTTGGGAGGCTTCTCATGGCCGGAAACGCGACTG
CCATGCGGCAAAGCTGCTTGGCAGCGCCATCCACGACGAGCATGCAGATG
AACTGCGGGATGACGGTCACGGCTACAGTTCCAGGTATCTTATCATTAAC
GTTACATTGGAGGGAAAGAGGCAGTTGCATCTCGATGTCGACGTTCCGTT
GCAGGGCTCCTTCGAGCCAAACGCATCGAGGCTATCCTTGCTGTTGCACC
AGGGTTGTATCGCGAACAGCGCCTCGCAGCATGCCGCCCGCGCCAAGCCA
AATGCATCCGACCGGACTTGCAGCGCAGCCGCTATTGCATTGCAGAGCCA
GAGCAAGAGGAGTCGAGGGACGAGTCGGTCCTTGTCGGCCACTTCAAGGC
CTTCCCAAGTGGTCCGCGCTGAAGACGCAGAAAAGAAGCCCAGGGCGTGC
AGATTTCCATCAGTGGCGTGGGTCGCAAATGCGGGCACTATCGCATCGAG
CACTGCTCCCGGCGCGTTGATGCGCCAGCCGCGCCCTGGCTCGTTTGTCA
GCGAGCCTGCGACCAAGCAGTCGGCAGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16290:301..1029-

>mRNA_P-wetherbeei_contig16290.1.1 ID=mRNA_P-wetherbeei_contig16290.1.1|Name=mRNA_P-wetherbeei_contig16290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig16290:301..1029- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGAAACGCGACTGCCATGCGGCAAAGCTGCTTGGCAGCGCCATC
CACGACGAGCATGCAGATGAACTGCGGGATGACGGTCACGGCTACAGTTC
CAGAGCCAGAGCAAGAGGAGTCGAGGGACGAGCCTTCCCAAGTGGTCCGC
GCTGAAGACGCAGAAAAGAAGCCCAGGGCGTGCAGATTTCCATCAGTGGC
GTGGGTCGCAAATGCGGGCACTATCGCATCGAGCACTGCTCCCGGCGCGT
TGATGCGCCAGCCGCGCCCTGGCTCGTTTGTCAGCGAGCCTGCGACCAAG
CAGTCGGCAGGA
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