mRNA_P-wetherbeei_contig1628.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1628.4.1
Unique NamemRNA_P-wetherbeei_contig1628.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1628.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1628contigP-wetherbeei_contig1628:5908..6864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size579
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-23_001980.1
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186081.8996985-CDS-P-wetherbeei_contig1628:5907..59871683186081.8996985-CDS-P-wetherbeei_contig1628:5907..5987Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1628 5908..5987 +
1683186081.9101608-CDS-P-wetherbeei_contig1628:6365..68641683186081.9101608-CDS-P-wetherbeei_contig1628:6365..6864Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1628 6366..6864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1628.4.1prot_P-wetherbeei_contig1628.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1628 5908..6864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1628.4.1

>prot_P-wetherbeei_contig1628.4.1 ID=prot_P-wetherbeei_contig1628.4.1|Name=mRNA_P-wetherbeei_contig1628.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
MNNEAQDTINVLKCGRCVAENCTNVPGYGFPGGNAECCSQHRNPRMVEVV
LLRCEAANCTRRRTYGFERGEARFCHSHSLPNMVDLMKRRTQCRVQNCTK
LSTYGTEGSLGRYCFTHKTAAMVYLKNRKRCEYYECTRQPTYGVEGMPAA
FCSAHKAADHIDVKNCRCLHPGCVRQPNYGVEGERARYCSTHK
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mRNA from alignment at P-wetherbeei_contig1628:5908..6864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1628.4.1 ID=mRNA_P-wetherbeei_contig1628.4.1|Name=mRNA_P-wetherbeei_contig1628.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig1628:5908..6864+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAACGAGGCCCAGGACACCATCAATGTCCTAAAGTGCGGCAGATG
TGTTGCCGAGAACTGCACCAATGTCCCTGGGTAAGCTACGCGAATTTCTG
TACAGAGAGCCTAGTTTATTCTCCCCTCACGCCTCTGGAAAGTTTCGGCA
GCACTGTTTTCGTTTTCGAATTGTCTTGCTCCCATCGTCGCGAAAGGCTG
GCGATTCAGAGGTTTTCTTTCGGGTGTGTCTCTCTCCAACTTCACATTCT
TCGCCTCTTTTTTCAAAATTCTGTCCTTTTTGAAGGAGCGCTGTCCGCGC
CCTCGCTTACCCGCCTTTACTTCTGCCCTGTCCATGCATTGTTACCATTT
CCTCGCATTCCCTGCCCCGTCCGGCCTCGCTATGCTCCTGTACCCCCACC
ATTGTTTTTGACATTGTTGACGCCGCATCCCCTGCGCCTGGCGATCGCCG
CGGAGCAGCTACGGCTTCCCCGGCGGCAATGCGGAGTGCTGCAGCCAGCA
TCGGAACCCGCGGATGGTGGAGGTGGTCTTGCTACGATGCGAGGCCGCAA
ACTGCACGCGACGGCGCACCTACGGCTTTGAGCGGGGGGAGGCGCGCTTC
TGCCACTCGCACAGCCTGCCGAACATGGTGGACCTTATGAAGCGGCGGAC
GCAGTGCCGCGTGCAGAACTGCACCAAGCTGTCGACTTACGGGACGGAAG
GCAGCCTGGGCCGATACTGCTTCACGCACAAGACGGCGGCAATGGTCTAC
CTGAAAAACCGCAAGCGGTGCGAGTACTACGAGTGCACGCGGCAGCCGAC
GTACGGCGTAGAAGGGATGCCCGCGGCGTTCTGCTCGGCCCACAAGGCGG
CGGACCATATCGATGTCAAGAACTGCCGCTGCCTGCACCCGGGGTGCGTC
CGACAGCCTAACTACGGCGTCGAGGGGGAGCGCGCGCGCTACTGCTCGAC
GCACAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1628:5908..6864+

>mRNA_P-wetherbeei_contig1628.4.1 ID=mRNA_P-wetherbeei_contig1628.4.1|Name=mRNA_P-wetherbeei_contig1628.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig1628:5908..6864+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAACGAGGCCCAGGACACCATCAATGTCCTAAAGTGCGGCAGATG
TGTTGCCGAGAACTGCACCAATGTCCCTGGCTACGGCTTCCCCGGCGGCA
ATGCGGAGTGCTGCAGCCAGCATCGGAACCCGCGGATGGTGGAGGTGGTC
TTGCTACGATGCGAGGCCGCAAACTGCACGCGACGGCGCACCTACGGCTT
TGAGCGGGGGGAGGCGCGCTTCTGCCACTCGCACAGCCTGCCGAACATGG
TGGACCTTATGAAGCGGCGGACGCAGTGCCGCGTGCAGAACTGCACCAAG
CTGTCGACTTACGGGACGGAAGGCAGCCTGGGCCGATACTGCTTCACGCA
CAAGACGGCGGCAATGGTCTACCTGAAAAACCGCAAGCGGTGCGAGTACT
ACGAGTGCACGCGGCAGCCGACGTACGGCGTAGAAGGGATGCCCGCGGCG
TTCTGCTCGGCCCACAAGGCGGCGGACCATATCGATGTCAAGAACTGCCG
CTGCCTGCACCCGGGGTGCGTCCGACAGCCTAACTACGGCGTCGAGGGGG
AGCGCGCGCGCTACTGCTCGACGCACAAG
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