mRNA_P-wetherbeei_contig1628.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA) HSP 1 Score: 162 bits (411), Expect = 1.040e-45 Identity = 87/132 (65.91%), Postives = 105/132 (79.55%), Query Frame = 2
Query: 143 PLAPPTPPISALPAF-PGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEM-----DDGREAATGLRKVSQEEILEAQQQSDADSAPHRVEWEF 520
PL P PP+ A P+F PGAASL+EQLD+ ++VVLRDGRHLVG+MRSYDQF+NIVLEDTHERHFVG LYGDIPLGLYIVRGDSVVL+GE+ L++V+ +EIL+AQQ+SD D P +VEW+F
Sbjct: 103 PLGRPXPPVIAPPSFFPGAASLHEQLDKVVMVVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVD--PFKVEWDF 232
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI) HSP 1 Score: 159 bits (401), Expect = 1.750e-45 Identity = 76/113 (67.26%), Postives = 98/113 (86.73%), Query Frame = 2
Query: 185 FPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGLRKVSQEEILEAQQQSDADSAPH-RVEWEF 520
FPG+ASL+EQLD+R++VVLRDGRHLVGVMRSYDQF+NIVLEDTHERHFV D++GDI LGLY+VRGD++VLMGE+D+ RE LR+VS +EI+EAQQ++ A+ +++W F
Sbjct: 22 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 134
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE) HSP 1 Score: 159 bits (403), Expect = 2.180e-44 Identity = 77/113 (68.14%), Postives = 98/113 (86.73%), Query Frame = 2
Query: 185 FPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGLRKVSQEEILEAQQQSDA-DSAPHRVEWEF 520
FPG+ASL+EQLD+R++VVLRDGRHLVGVMRSYDQF+NIVLEDTHERHFV D++GDI LGLY+VRGD++VLMGE+D+ RE LR+VS +EI+EAQQ++ A D +++W F
Sbjct: 129 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLF 241
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A4D9CWQ3_9STRA (Sm domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWQ3_9STRA) HSP 1 Score: 144 bits (363), Expect = 2.560e-37 Identity = 78/127 (61.42%), Postives = 100/127 (78.74%), Query Frame = 2
Query: 146 LAPPTPPISALPAF-PGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGLRKVSQEEILEAQQQSDADSAPHRVEWEFD 523
+ PP P ++ LP + PGAASL EQLDRR+LVVLRDGR+LVGV+RS+DQF+N+VLEDT+ERH V YGD+PLGLY+VRGD+VVL+GE++ RE + L KV+ EEILE Q S A +VEW+F+
Sbjct: 227 MLPPRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVLRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKS-LEKVTTEEILELLQGSGEAGA--KVEWDFE 350
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA) HSP 1 Score: 137 bits (344), Expect = 3.570e-37 Identity = 68/114 (59.65%), Postives = 94/114 (82.46%), Query Frame = 2
Query: 185 FPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGL-RKVSQEEILEAQQQSDADSAPHRVEWEFD 523
F G SL EQLD+++LVVLRDGRHLVGV+RS+DQF+N+V+E+THERH V ++GDIPLGLYIVRGD+VVL+GE+D+ +E+++ R+VS EEIL AQ+ ++ + +V W+FD
Sbjct: 5 FAGGMSLVEQLDKKILVVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQRNTEDKT---KVAWDFD 115
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A7S2CG66_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG66_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.240e-36 Identity = 67/124 (54.03%), Postives = 93/124 (75.00%), Query Frame = 2
Query: 152 PPTPPISALPAFPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGLRKVSQEEILEAQQQSDADSAPHRVEWEFD 523
PP P PGAASL +QLD+R+L+VLRDGRHLVG++RS+DQF+N+VLEDTHERH L D+ LGL+IVRGD++VL+GE+D +EA++GL + +LEA++ +SA +VEW+F+
Sbjct: 4 PPMEPTQMGLLLPGAASLVDQLDKRILIVLRDGRHLVGILRSFDQFSNMVLEDTHERHVANGLRSDMALGLFIVRGDNIVLLGELDPEKEASSGLIDAEPDVVLEAER----NSAFTKVEWDFE 123
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: W4GB80_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB80_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.760e-36 Identity = 68/121 (56.20%), Postives = 91/121 (75.21%), Query Frame = 2
Query: 167 ISALPAFPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAA-TGLRKVSQEEILEAQQQSDADSAPH-RVEWEFD 523
++++ FPG +SL EQLD++LLVVLRDGRHLVG++RS+DQF+NIVLE T ERH VG+ Y DIPLGLYI+RG+++VLMGE+D +EA L + S EE+L A+ + + P R W FD
Sbjct: 1 MNSMTGFPGVSSLVEQLDKQLLVVLRDGRHLVGIIRSFDQFSNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQGLPTVRDAWNFD 121
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A6G0XJC2_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJC2_9STRA) HSP 1 Score: 134 bits (338), Expect = 3.200e-36 Identity = 66/116 (56.90%), Postives = 88/116 (75.86%), Query Frame = 2
Query: 182 AFPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATG--LRKVSQEEILEAQQQSDADSAPHRVEWEFD 523
AFPG SL EQLD+++LVVLRDGRHLVG++RS+DQ++NIVLE+T ERH VG+ Y DIPLGLYI+RG+++VLMGE+D +EAA +RK ++E + +Q + A R W FD
Sbjct: 3 AFPGVTSLVEQLDKQMLVVLRDGRHLVGMIRSFDQYSNIVLEETCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAADENLVRKTAEEVLTAEMEQQEQGQATVRDTWNFD 118
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A485L216_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L216_9STRA) HSP 1 Score: 134 bits (338), Expect = 3.390e-36 Identity = 69/116 (59.48%), Postives = 87/116 (75.00%), Query Frame = 2
Query: 182 AFPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAAT-GLRKVSQEEILEAQQQSDADSAPH-RVEWEFD 523
AFPG SL EQ+D+++LVVLRDGRHLVG++RS+DQF+NIVLEDT ERH VG Y DIPLGLYI+RG+++VLMGE+D +EAA L + S EE+L A+ + P R W FD
Sbjct: 4 AFPGVTSLVEQVDKQMLVVLRDGRHLVGIIRSFDQFSNIVLEDTCERHVVGTTYCDIPLGLYIIRGENIVLMGELDQEKEAADENLTRKSPEEVLTAEMEQMEQGQPTVRDAWNFD 119
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A7R9YFM7_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFM7_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.350e-35 Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 2
Query: 188 PGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGLRKVSQEEILEAQQ-QSDADSAPHRVEWEFD 523
PGAASL E LDRRLLVVLRDGRHLVG+MRSYDQFAN+VLE+T ER D Y + PLGLYIVRGDSVVL+GE EA GL+KVS EEI E ++ +++ +W F+
Sbjct: 9 PGAASLMESLDRRLLVVLRDGRHLVGIMRSYDQFANMVLEETVEREVFQDCYAETPLGLYIVRGDSVVLLGETHQDGEARMGLQKVSLEEIAEKRKLENEETGGAGSADWNFE 121 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1628.1.2 >prot_P-wetherbeei_contig1628.1.2 ID=prot_P-wetherbeei_contig1628.1.2|Name=mRNA_P-wetherbeei_contig1628.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp MGAPPGAPQFALGPLAPPTPPISALPAFPGAASLYEQLDRRLLVVLRDGRback to top mRNA from alignment at P-wetherbeei_contig1628:124..1197- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1628.1.2 ID=mRNA_P-wetherbeei_contig1628.1.2|Name=mRNA_P-wetherbeei_contig1628.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig1628:124..1197- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1628:124..1197- >mRNA_P-wetherbeei_contig1628.1.2 ID=mRNA_P-wetherbeei_contig1628.1.2|Name=mRNA_P-wetherbeei_contig1628.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig1628:124..1197- (Phaeothamnion wetherbeei SAG_119_79)back to top |