mRNA_P-wetherbeei_contig16278.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16278.1.1
Unique NamemRNA_P-wetherbeei_contig16278.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16278.1.1 vs. uniprot
Match: A0A7V2SPU8_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7V2SPU8_9HYPH)

HSP 1 Score: 202 bits (514), Expect = 1.220e-58
Identity = 121/288 (42.01%), Postives = 179/288 (62.15%), Query Frame = 1
Query:    1 RAHSVLNTARGNLSSHQALLSRVNGRVSGGRGPASDLSEAQARTAQAAALVAEAEGRVRDADALFRAVVGRGPGKLTPVGMPATPAPANIDEAVAEALAFAPSVLATQHDATAAQAALGSANARFLPRVNLELSTHRGFGMTTDGDREVDSRAMLVVRWNLLNGGIDKARIWEATARSFEANEISANTKRIIERETRVSWNAILTAGTRVPLLRRQVDQTRSTRASYNAQFDAGSRRLLDLLNVQSELFVAEASLRTEEFVRVYNSYRLLAAMGRLVPALGLEPPPEA 864
            R+H++L  AR NL     +   VN R  GG+G  ++ ++A+AR A A A +AEA  RVRDA AL+   VG+ PGKLT         P ++  A++ A + +P +LA +HDA AA+AA+G+A A  +P++NLE+S +    +     R  + +A++V++WNL NGGI+ AR+ EA  R  E+  +S      IERE R+SW+A+L A  R   LRRQ+   R   +    QF+AG R LLD+L+ Q+E+F  E +L+TE +V  +N+YR+LAAMGRLV +L +  P  A
Sbjct:  143 RSHAILAAARRNLRELSNIAYMVNRRARGGKGNRAETAQARARVAAAKAGLAEARQRVRDAYALYITTVGKKPGKLTTGAPRLNQMPRSLSTAISRARSRSPKILALRHDALAAKAAIGTAEAVLMPKLNLEVSGNYANELYGTSARTTNGKALVVLKWNLYNGGINSARVREAKFRESESRSLSQVAGLNIEREVRISWSAMLAARDRANYLRRQLSANRVALSVQKRQFEAGKRTLLDILDTQNEVFTTETALKTEIYVARFNTYRVLAAMGRLVSSLNIALPQAA 430          
BLAST of mRNA_P-wetherbeei_contig16278.1.1 vs. uniprot
Match: A0A8J7T120_9PROT (TolC family outer membrane protein n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7T120_9PROT)

HSP 1 Score: 180 bits (457), Expect = 1.880e-49
Identity = 117/290 (40.34%), Postives = 165/290 (56.90%), Query Frame = 1
Query:    1 RAHSVLNTARGNLSSHQALLSRVNGRVSGGRGPASDLSEAQARTAQAAALVAEAEGRVRDADALFRAVVGRGPGKLTPVGMPATPAPANIDEAVAEALAFAPSVLATQHDATAAQAALGSANARFLPRVNLELSTHRGFGMTTDGDREVDSRAMLVV--RWNLLNGGIDKARIWEATARSFEANEISANTKRIIERETRVSWNAILTAGTRVPLLRRQVDQTRSTRASYNAQFDAGSRRLLDLLNVQSELFVAEASLRTEEFVRVYNSYRLLAAMGRLVPALGLEPPPEA 864
            R   +L  A  N+  H+ +L RV  R  GGRGP SD+ +AQAR + A A VA A  +  DA AL+   VG  P  LT    P +  PA++DEAV  A   AP+V A   D   A AA+G A++R+ P +  E + +  F    DG R    +  L++  RWNL  GG D AR  EA AR +E+ E    ++R + ++TRVSWNA+ +A  R   L++Q+      R +Y+ QFD G R LLDLL++Q+E+F  +  + TEE    +  +R LA+MGRL+  LG+  P EA
Sbjct:  162 RTQRILEIATQNVRVHEEILRRVQARARGGRGPQSDVDQAQARLSNAQANVATARRQYGDAVALYVQAVGEQPTALTDTSSPDSALPASVDEAVTAATEQAPAVRAATADVRVAHAAIGVADSRWFPTITAEANYN--FLYNADGTRGQAEQFSLMLQGRWNLYRGGSDVARKREAVARLYESRETLERSRREVAQQTRVSWNAVQSARERRVALQQQLAANERVRVAYSQQFDRGRRTLLDLLDIQNEVFNNQTGIATEEATVRFGIFRTLASMGRLLDTLGIAAPGEA 449          
BLAST of mRNA_P-wetherbeei_contig16278.1.1 vs. uniprot
Match: A0A1G1B6H8_9PROT (Uncharacterized protein n=1 Tax=Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 TaxID=1801615 RepID=A0A1G1B6H8_9PROT)

HSP 1 Score: 166 bits (420), Expect = 6.170e-45
Identity = 108/288 (37.50%), Postives = 165/288 (57.29%), Query Frame = 1
Query:    1 RAHSVLNTARGNLSSHQALLSRVNGRVSGGRGPASDLSEAQARTAQAAALVAEAEGRVRDADALFRAVVGRGPGKLTPVGMPATPAPANIDEAVAEALAFAPSVLATQHDATAAQAALGSANARFLPRVNLELSTHRGFGMTTDGDREVDSRAMLVVRWNLLNGGIDKARIWEATARSFEANEISANTKRIIERETRVSWNAILTAGTRVPLLRRQVDQTRSTRASYNAQFDAGSRRLLDLLNVQSELFVAEASLRTEEFVRVYNSYRLLAAMGRLVPALGLEPPPEA 864
            R   +L  A+ NL+ H     ++  R  GG G  +DL +AQAR + + A VA AE  +R+A+  +  VVG  P  L    +    APA++D+A+ EAL   P + +   D  A +A   +A +   PRV+LEL T     +     +  D+ AM+ +R+NL NGG DKARI EA  ++ EA E+   T+R +E   R+SWN++LTA  R+P L+   +    TR  Y  QF+ G R LLDLL+ ++ELF+  ++    +++ +++ YRL+A MGRL+  LG+ P  EA
Sbjct:  119 RREELLKLAQDNLAVHDKTFGQIKIRSEGGIGRKADLDQAQARFSLSQANVASAEANLREANIAYNRVVGVMPDALVKPAI--VEAPASVDDALKEALENNPILRSAMADIEATRAQKSAAESLLKPRVHLELGTSWNNDLDGVDYKNNDAYAMVRMRYNLFNGGSDKARISEAGIQTQEAIEVLNRTQRQVEESLRLSWNSLLTAQDRLPKLKATAEAAERTRDGYAQQFNIGQRTLLDLLDSENELFIGRSNYLEAQYIDLFSRYRLMADMGRLLNTLGVTPREEA 404          
BLAST of mRNA_P-wetherbeei_contig16278.1.1 vs. uniprot
Match: A0A7W6RXB4_9PROT (Adhesin transport system outer membrane protein n=1 Tax=Roseospira goensis TaxID=391922 RepID=A0A7W6RXB4_9PROT)

HSP 1 Score: 169 bits (427), Expect = 6.370e-45
Identity = 111/289 (38.41%), Postives = 158/289 (54.67%), Query Frame = 1
Query:    1 RAHSVLNTARGNLSSHQALLSRVNGRVSGGRGPASDLSEAQARTAQAAALVAEAEGRVRDADALFRAVVGRGPGKLTPVGMPATPAPANIDEAVAEALAFAPSVLATQHDATAAQAALGSANARFLPRVNLELSTHRGFGMTTDGDREVDSRAMLVVRWNLLNGGIDKARIWEATARSFEANEISANTKRIIERETRVSWNAILTAGTRVPLLRRQVDQTRSTRASYNAQFDAGSRRLLDLLNVQSELFVAEASLRTEEFVRVYNSYRLLAAMGRLVPALGLEPPPEAV 867
            R   +L  AR N++ H+++L++V  RV GG     DL + ++R A A   V  +E  +RDA A F  VVG     L      A   P  +DEAVA A+  +P++ A   +   A A    A AR+ P +NLEL   R + +        D+ A+L + WNL NGGID AR  E   R  E    + N +R I  ET++SWNA+  A TRV +LR QV       A+Y  +F  G R LLDLL+ ++ELF+A ++L + ++V  + +YR+LA MG L   LG+  P EAV
Sbjct:  145 RFQDLLGIARENVAVHESILAQVRQRVEGGESGVGDLQQTESRLAAARETVVSSEQDLRDARARFMRVVGAEAEGLNQAPSVAGSLPGRLDEAVAYAINNSPTLRARAAEIDEAAAVHREAAARYYPTINLELQHSRNYNVDGANGANNDASALLRLNWNLFNGGIDTARRSELAHRVGEQRAETMNVERAIAEETKISWNALDAARTRVGILREQVSSNTEVVATYRQEFLIGQRDLLDLLDSENELFLARSALVSAQYVTEFAAYRILAVMGALSSTLGIGDPAEAV 433          
BLAST of mRNA_P-wetherbeei_contig16278.1.1 vs. uniprot
Match: A0A7C5BNU3_9GAMM (Type I secretion protein TolC n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7C5BNU3_9GAMM)

HSP 1 Score: 149 bits (375), Expect = 3.680e-38
Identity = 97/289 (33.56%), Postives = 158/289 (54.67%), Query Frame = 1
Query:    1 RAHSVLNTARGNLSSHQALLSRVNGRVSGGRGPASDLSEAQARTAQAAALVAEAEGRVRDADALFRAVVGRGPGKLTPVGMPATPAPANIDEAVAEALAFAPSVLATQHDATAAQAALGSANARFLPRVNLELSTHRGFGMTTDGDREVDSRAMLVVRWNLLNGGIDKARIWEATARSFEANEISANTKRIIERETRVSWNAILTAGTRVPLLRRQVDQTRSTRASYNAQFDAGSRRLLDLLNVQSELFVAEASLRTEEFVRVYNSYRLLAAMGRLVPALGLEPPPEAV 867
            R   +L+ A  N  +H+    ++  R + G G  +D ++++ R A A A +   +G +RDA+  +  V+G     LT    P +  P  +DEA+ +AL   P++ + + D  +A A   +AN+ F PR+++EL T+    +        D  AML +R+NLLNGG DKAR  E      +A EI  NT R +E+  R+SWN + T   ++   +  VD +  +R +Y  QF  G R LLDLL+ ++E+FV+   L   E+ +++  YR++ +MG L+  LG+  P EAV
Sbjct:  146 REQRLLDLANTNYEAHERTHDQITLRSNRGVGRKADTAQSRGRLALAKANLIAQQGNLRDAETTYLRVIGETADNLTEPVSPQSSIPETLDEAINQALDNHPTLKSAEADVASANAQHDTANSPFYPRLDIELGTNADNNIDGISGYNNDLTAMLRLRYNLLNGGKDKARREETAYLINQATEIRNNTHRQVEQSVRLSWNELQTVNNQLEYFKLHVDSSEESRDAYQQQFVLGQRSLLDLLDSENEVFVSSQDLVNGEYDQLFAIYRIMNSMGGLLEGLGVALPEEAV 434          
BLAST of mRNA_P-wetherbeei_contig16278.1.1 vs. uniprot
Match: A0A7C1ZDC8_9GAMM (Type I secretion protein TolC n=2 Tax=root TaxID=1 RepID=A0A7C1ZDC8_9GAMM)

HSP 1 Score: 145 bits (366), Expect = 6.190e-37
Identity = 101/290 (34.83%), Postives = 153/290 (52.76%), Query Frame = 1
Query:    1 RAHSVLNTARGNLSSHQALLSRVNGRVSGGRGPASDLSEAQARTAQAAALVAEAEGRVRDADALFRAVVGRGPGKLT-PVGMPATPAPANIDEAVAEALAFAPSVLATQHDATAAQAALGSANARFLPRVNLELSTHRGFGMTTDGDREVDSRAMLVVRWNLLNGGIDKARIWEATARSFEANEISANTKRIIERETRVSWNAILTAGTRVPLLRRQVDQTRSTRASYNAQFDAGSRRLLDLLNVQSELFVAEASLRTEEFVRVYNSYRLLAAMGRLVPALGLEPPPEAV 867
            R   +L+    NL++H  + S++  R   G G  +D+ ++  R A + A +  ++G   DA   +  VVG  P  L  P       APA +++A+  A    P++ A   D  AA A    ANA   PRV+LELST     +  +   + D++AM  +R+NLLNGG DKARI E    S    + +  TKR IE + R++WN+++T   R+  L  +V  TR+TR +Y  QF+ G R LLDLL+ ++E   A       ++ R+Y  Y L   MG+L+  L L  P EA+
Sbjct:  131 RRQQILSFTEDNLANHDHIFSQIKQRADSGVGNQADVEQSSGRLALSRANLTASKGNYEDAQTNYLRVVGHLPDSLIDPSDECCNNAPATLEDAIKIASHQHPALHAAIADHEAALAQQQGANAPMQPRVDLELSTTANNDIDGENGHDNDAQAMFRMRYNLLNGGADKARIDETAFLSENVKQTANITKREIENDVRLAWNSLVTLTNRLSYLDERVALTRTTREAYQQQFNLGLRTLLDLLDTENEYLTARIDYANAKYDRLYACYWLSETMGKLLETLKLTAPEEAI 420          
BLAST of mRNA_P-wetherbeei_contig16278.1.1 vs. uniprot
Match: A0A848W3Q2_9PROT (TolC family outer membrane protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W3Q2_9PROT)

HSP 1 Score: 145 bits (366), Expect = 8.110e-37
Identity = 98/276 (35.51%), Postives = 147/276 (53.26%), Query Frame = 1
Query:   25 ARGNLSSHQALLSRVNGRVSGGRGPASDLSEAQARTAQAAALVAEAEGRVRDADALFRAVVGRGPGKLTPVGMPATPAPANIDEA--VAEALAFAPSVLATQHDATAAQAALGSANARFLPRVNLELSTHRGFGMTTDGDREVDSRAMLVVRWNLLNGGIDKARIWEATARSFEANEISANTKRIIERETRVSWNAILTAGTRVPLLRRQVDQTRSTRASYNAQFDAGSRRLLDLLNVQSELFVAEASLRTEEFVRVYNSYRLLAAMGRLVPALGL 846
            A GN+++H+ LL  V   V  GR   SD+S+ ++R A A A +   +G +RDA+  +   VG  PG+L P+  P  P+P +ID    V +A+   P +   +    A +AA  + +  F PR+ +ELS   G  +     R+ D RA+L++ WNL  GG D AR  EA A         A+T R I      S+ +      R   L R+V++ R+  ++Y  QF+ G R LLDLL+VQ+ELFV+ A L   +   +++ Y LLAA G L P  G+
Sbjct:  161 AEGNVTAHERLLGNVRQLVDSGRASDSDVSQGESRLALAEANLENRKGELRDAETRYFRSVGEAPGELDPI--PGAPSPGDIDVEGQVQQAVRLNPELAVARALIDAREAASKATDGLFRPRLEMELSASEGKNLDGVRGRDTDYRAVLILTWNLYRGGADSARAREAAANLTAVKFDEADTLRFIRERVEASFKSFEKNAARQGPLTRRVEENRNLISAYERQFELGQRTLLDLLDVQNELFVSRAELIDAQHSGLFDYYDLLAASGELGPLFGI 434          
BLAST of mRNA_P-wetherbeei_contig16278.1.1 vs. uniprot
Match: A0A6L6JM17_9GAMM (TolC family outer membrane protein n=1 Tax=Methylophaga sp. TaxID=2024840 RepID=A0A6L6JM17_9GAMM)

HSP 1 Score: 144 bits (364), Expect = 1.160e-36
Identity = 103/292 (35.27%), Postives = 157/292 (53.77%), Query Frame = 1
Query:    1 RAHSVLNTARGNLSSHQALLSRVNGRVSGGRGPASDLSEAQARTAQAAALVAEAEGRVRDADALFRAVVGRGPGKLTPVGMPATP-APANIDEAVAEALAFAPSVLAT--QHDATAAQAALGSANARFLPRVNLELSTHRGFGMTTDGDREVDSRAMLVVRWNLLNGGIDKARIWEATARSFEANEISANTKRIIERETRVSWNAILTAGTRVPLLRRQVDQTRSTRASYNAQFDAGSRRLLDLLNVQSELFVAEASLRTEEFVRVYNSYRLLAAMGRLVPALGLEPPPEAV 867
            R   +L     NL SH+ + S++  R   G G ++DL + + R A + A +   +G + DA + +  VVG  P   T  G+     APA +DEA+A A    P++ +   QH+A  AQ     A A F PRV+LELST     +  +   E +  AM  +R+NLLNGG D AR+ E    S +A E +    R IER+ R++WN++     ++P+L++++D    TR +Y  QF+ G R LLDLL+ ++E+  A A      +  +Y  Y L   MG+L+  L LE P EA+
Sbjct:  130 RRQDLLKLTEANLESHERIYSQIEQRFDSGVGNSADLEQTKGRLALSQANLTSNKGNLEDALSNYNRVVGNMPEAPTDPGLDCCDKAPATLDEALAIAYHQHPALRSAMAQHEAALAQEQ--GAEAPFHPRVDLELSTRADNNLDGEKGHEKEILAMARLRYNLLNGGADMARLEETGFLSQQAREEANIAIRDIERDVRLAWNSLDNLSHQLPVLKQRMDSALMTREAYQEQFNLGQRTLLDLLDTENEVLTASADYTNTYYDHLYACYWLAETMGKLLEQLELEAPEEAI 419          
BLAST of mRNA_P-wetherbeei_contig16278.1.1 vs. uniprot
Match: UPI001CF5DC1C (TolC family outer membrane protein n=1 Tax=unclassified Methylophaga TaxID=2629249 RepID=UPI001CF5DC1C)

HSP 1 Score: 143 bits (361), Expect = 3.800e-36
Identity = 100/288 (34.72%), Postives = 150/288 (52.08%), Query Frame = 1
Query:    1 RAHSVLNTARGNLSSHQALLSRVNGRVSGGRGPASDLSEAQARTAQAAALVAEAEGRVRDADALFRAVVGRGPGKLTPVGMPATPAPANIDEAVAEALAFAPSVLATQHDATAAQAALGSANARFLPRVNLELSTHRGFGMTTDGDREVDSRAMLVVRWNLLNGGIDKARIWEATARSFEANEISANTKRIIERETRVSWNAILTAGTRVPLLRRQVDQTRSTRASYNAQFDAGSRRLLDLLNVQSELFVAEASLRTEEFVRVYNSYRLLAAMGRLVPALGLEPPPEA 864
            R   ++  A+ NL SHQ    ++  R   G G  +D+ ++  R A A   +   +  +RDA+  +  VVG  P  L+    P    PA ++EAV  A+   P++L+ Q D  +A A      A FLPRV+ EL T     +      + D  AM  +R+NLLNGG DKAR  E      +A EI  NT R +E+  R+SWNA+ T   ++    +  +    TR +Y  QF+ G R LLDLL+ ++ELF A  SL   ++  ++  YR+L +MG L+ +L + PP  A
Sbjct:  144 RRQQLVELAQTNLESHQRTHDQITLRSERGVGRRADMDQSFGRLALAETNLMAEQSNLRDAETNYLRVVGAAPTALSEPPTPQPFIPATVEEAVNIAIQQHPTLLSAQADVESANAQHDVTRAAFLPRVDFELGTRSDHDIDGVRGTDKDVTAMFRLRYNLLNGGRDKARREETAFLINQAAEIRNNTHRQVEQSVRLSWNALETVRRQMSYFLQYAESAEKTRDAYQQQFNIGQRTLLDLLDSENELFRARTSLANAQYDELFAMYRVLNSMGILLESLEIIPPAAA 431          
BLAST of mRNA_P-wetherbeei_contig16278.1.1 vs. uniprot
Match: A0A1U7JFJ3_9HYPH (Agglutination protein n=2 Tax=Pseudovibrio exalbescens TaxID=197461 RepID=A0A1U7JFJ3_9HYPH)

HSP 1 Score: 142 bits (358), Expect = 1.680e-35
Identity = 99/288 (34.38%), Postives = 149/288 (51.74%), Query Frame = 1
Query:    1 RAHSVLNTARGNLSSHQALLSRVNGRVSGGRGPASDLSEAQARTAQAAALVAEAEGRVRDADALFRAVVGRGPGKLTPVGMPATPAPANIDEAVAEALAFAPSVLATQHDATAAQAALGSANARFLPRVNLELSTHRGFGMTTDGDREVDSRAMLVVRWNLLNGGIDKARIWEATARSFEANEISANTKRIIERETRVSWNAILTAGTRVPLLRRQVDQTRSTRASYNAQFDAGSRRLLDLLNVQSELFVAEASLRTEEFVRVYNSYRLLAAMGRLVPALGLEPPPEA 864
            R  +V + AR N++ H  + S +   +S G    +D+ +A  R   A   + EA      + ALF  +VG+   K   +       P+  +  +A+A A  P +     D  AA A +  A A + P V+LE+S+  G  +  +   + D+RA LV+RWNL NG I K R  E   R+ EA   S    R + RETR SW        ++ LL RQV+ TR    SY  QF  G R LLD+L+ Q+ +F +E +  + E+  ++  YRLLAAMGR++  LG++PP +A
Sbjct:  145 RLQAVQDAARRNINYHLRIASDMRAGLSRGAVSVADVQQANERVLAAKLALEEAVEEQELSKALFLEIVGKPISKAQRIPAQGRRIPSGYEAVLAQARANNPLISLRNADIDAANAQVKIAEADYYPTVDLEVSSRFGENLQGEVGTKADARASLVMRWNLFNGNITKNRRAEEIERAGEARMRSQQAYREVARETRESWIRRNELNKQIGLLTRQVETTRQLLVSYEEQFTVGQRSLLDVLDTQNTVFRSEVAKISAEYAYLFTEYRLLAAMGRMLDVLGIQPPAQA 432          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16278.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V2SPU8_9HYPH1.220e-5842.01Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A8J7T120_9PROT1.880e-4940.34TolC family outer membrane protein n=1 Tax=Candida... [more]
A0A1G1B6H8_9PROT6.170e-4537.50Uncharacterized protein n=1 Tax=Methylotenera sp. ... [more]
A0A7W6RXB4_9PROT6.370e-4538.41Adhesin transport system outer membrane protein n=... [more]
A0A7C5BNU3_9GAMM3.680e-3833.56Type I secretion protein TolC n=3 Tax=Gammaproteob... [more]
A0A7C1ZDC8_9GAMM6.190e-3734.83Type I secretion protein TolC n=2 Tax=root TaxID=1... [more]
A0A848W3Q2_9PROT8.110e-3735.51TolC family outer membrane protein n=1 Tax=Alphapr... [more]
A0A6L6JM17_9GAMM1.160e-3635.27TolC family outer membrane protein n=1 Tax=Methylo... [more]
UPI001CF5DC1C3.800e-3634.72TolC family outer membrane protein n=1 Tax=unclass... [more]
A0A1U7JFJ3_9HYPH1.680e-3534.38Agglutination protein n=2 Tax=Pseudovibrio exalbes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16278contigP-wetherbeei_contig16278:2..868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1286106.MPL1_01478
PFAMsOEP
Model size867
Max annot lvl72273|Thiotrichales
KEGG koko:K12543
KEGG TC1.B.17,3.A.1.109.4
KEGG ModuleM00330
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.48e-40
EggNOG OGsCOG1538@1|root,COG1538@2|Bacteria,1MYX2@1224|Proteobacteria,1RNX1@1236|Gammaproteobacteria,4608N@72273|Thiotrichales
DescriptionTIGRFAM type I secretion outer membrane protein, TolC family
Cds size867
COG categoryMU
BRITEko00000,ko00002,ko02000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186081.7357256-CDS-P-wetherbeei_contig16278:1..8681683186081.7357256-CDS-P-wetherbeei_contig16278:1..868Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16278 2..868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16278.1.1prot_P-wetherbeei_contig16278.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16278 2..868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16278.1.1

>prot_P-wetherbeei_contig16278.1.1 ID=prot_P-wetherbeei_contig16278.1.1|Name=mRNA_P-wetherbeei_contig16278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=289bp
RAHSVLNTARGNLSSHQALLSRVNGRVSGGRGPASDLSEAQARTAQAAAL
VAEAEGRVRDADALFRAVVGRGPGKLTPVGMPATPAPANIDEAVAEALAF
APSVLATQHDATAAQAALGSANARFLPRVNLELSTHRGFGMTTDGDREVD
SRAMLVVRWNLLNGGIDKARIWEATARSFEANEISANTKRIIERETRVSW
NAILTAGTRVPLLRRQVDQTRSTRASYNAQFDAGSRRLLDLLNVQSELFV
AEASLRTEEFVRVYNSYRLLAAMGRLVPALGLEPPPEAV
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mRNA from alignment at P-wetherbeei_contig16278:2..868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16278.1.1 ID=mRNA_P-wetherbeei_contig16278.1.1|Name=mRNA_P-wetherbeei_contig16278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=867bp|location=Sequence derived from alignment at P-wetherbeei_contig16278:2..868+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGCGCATTCGGTCCTCAATACCGCACGCGGCAACCTGAGTTCTCATCA AGCCCTGTTGTCGCGTGTCAACGGCCGTGTGTCGGGTGGTCGCGGCCCGG CCTCGGACTTGAGCGAGGCCCAGGCTCGAACGGCGCAGGCTGCAGCACTG GTTGCCGAAGCGGAGGGCCGTGTCCGCGACGCCGATGCGTTGTTCCGGGC GGTGGTGGGGCGCGGTCCGGGCAAGTTGACGCCGGTCGGCATGCCGGCCA CGCCCGCGCCTGCCAATATCGACGAGGCGGTGGCCGAGGCCCTGGCTTTT GCGCCTTCGGTCCTAGCCACCCAGCACGATGCGACGGCGGCGCAGGCAGC CCTGGGCAGTGCGAACGCGCGGTTCCTGCCCCGCGTCAATCTCGAGCTGT CGACGCATCGGGGCTTCGGCATGACGACCGATGGCGATCGTGAGGTCGAT TCCCGGGCGATGCTCGTCGTGCGCTGGAACTTGCTCAACGGCGGCATCGA CAAGGCCCGGATCTGGGAGGCCACGGCAAGATCGTTCGAGGCCAATGAGA TCTCGGCTAACACCAAGCGCATCATCGAACGCGAGACGCGGGTATCGTGG AACGCGATCCTGACGGCTGGAACCCGGGTGCCGCTGCTTCGCCGCCAGGT CGATCAGACGCGATCGACCCGCGCCTCCTACAATGCGCAGTTCGATGCCG GCTCCCGCCGGCTGCTGGATCTGCTGAACGTGCAATCGGAGTTGTTCGTC GCCGAGGCCTCGCTGCGCACCGAAGAGTTCGTGCGTGTCTACAACAGTTA TCGGCTGCTGGCAGCGATGGGCCGCCTGGTTCCGGCGCTGGGTCTGGAGC CGCCGCCGGAAGCGGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16278:2..868+

>mRNA_P-wetherbeei_contig16278.1.1 ID=mRNA_P-wetherbeei_contig16278.1.1|Name=mRNA_P-wetherbeei_contig16278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=867bp|location=Sequence derived from alignment at P-wetherbeei_contig16278:2..868+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGCGCATTCGGTCCTCAATACCGCACGCGGCAACCTGAGTTCTCATCA
AGCCCTGTTGTCGCGTGTCAACGGCCGTGTGTCGGGTGGTCGCGGCCCGG
CCTCGGACTTGAGCGAGGCCCAGGCTCGAACGGCGCAGGCTGCAGCACTG
GTTGCCGAAGCGGAGGGCCGTGTCCGCGACGCCGATGCGTTGTTCCGGGC
GGTGGTGGGGCGCGGTCCGGGCAAGTTGACGCCGGTCGGCATGCCGGCCA
CGCCCGCGCCTGCCAATATCGACGAGGCGGTGGCCGAGGCCCTGGCTTTT
GCGCCTTCGGTCCTAGCCACCCAGCACGATGCGACGGCGGCGCAGGCAGC
CCTGGGCAGTGCGAACGCGCGGTTCCTGCCCCGCGTCAATCTCGAGCTGT
CGACGCATCGGGGCTTCGGCATGACGACCGATGGCGATCGTGAGGTCGAT
TCCCGGGCGATGCTCGTCGTGCGCTGGAACTTGCTCAACGGCGGCATCGA
CAAGGCCCGGATCTGGGAGGCCACGGCAAGATCGTTCGAGGCCAATGAGA
TCTCGGCTAACACCAAGCGCATCATCGAACGCGAGACGCGGGTATCGTGG
AACGCGATCCTGACGGCTGGAACCCGGGTGCCGCTGCTTCGCCGCCAGGT
CGATCAGACGCGATCGACCCGCGCCTCCTACAATGCGCAGTTCGATGCCG
GCTCCCGCCGGCTGCTGGATCTGCTGAACGTGCAATCGGAGTTGTTCGTC
GCCGAGGCCTCGCTGCGCACCGAAGAGTTCGTGCGTGTCTACAACAGTTA
TCGGCTGCTGGCAGCGATGGGCCGCCTGGTTCCGGCGCTGGGTCTGGAGC
CGCCGCCGGAAGCGGTT
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