mRNA_P-wetherbeei_contig16277.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16277.1.1
Unique NamemRNA_P-wetherbeei_contig16277.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16277.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16277contigP-wetherbeei_contig16277:63..1326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size925
Hectar predicted targeting categoryother localisation
Exons2
Cds size924
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186081.6792626-CDS-P-wetherbeei_contig16277:62..1611683186081.6792626-CDS-P-wetherbeei_contig16277:62..161Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16277 63..161 +
1683186081.6894062-CDS-P-wetherbeei_contig16277:500..13251683186081.6894062-CDS-P-wetherbeei_contig16277:500..1325Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16277 501..1325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16277.1.1prot_P-wetherbeei_contig16277.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16277 63..1325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16277.1.1

>prot_P-wetherbeei_contig16277.1.1 ID=prot_P-wetherbeei_contig16277.1.1|Name=mRNA_P-wetherbeei_contig16277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=308bp
ESRREAGEQEAMAREDRASHLENDAFALQLAEMVERRRQLQWLAASVGSR
LGGNGSGGLSFADSGSGGRGGIVTASLDDIIYVSSDESDLGEADVAFAVR
MGIPLAGLEGTDRDGDSAGDSDGDGDENNDSGRDSGSEDRTGSGDSGGGE
DGEDGEGDRANSGIVRRRDRESRDGQERSSGDRNAGGGGGDGASVKSYEE
GPPVASDPEQAFLEPPPPDGSRTSGADKAVSFSANEGRTGDQTSQPDMDG
GGGGNLGNGGDCGGGGGGLKPAGRHSASVAARDSTSRSSKVRKAWMRGSA
GSGGSRGS
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mRNA from alignment at P-wetherbeei_contig16277:63..1326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16277.1.1 ID=mRNA_P-wetherbeei_contig16277.1.1|Name=mRNA_P-wetherbeei_contig16277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1264bp|location=Sequence derived from alignment at P-wetherbeei_contig16277:63..1326+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAGCCGCCGTGAGGCCGGGGAACAGGAGGCCATGGCGCGGGAAGATCG
TGCGAGTCATCTGGAGAACGATGCCTTTGCGCTCCAGCTGGCTGAGATGG
TAGGCGCCGATTGTTCATCCGCGACAGGGCTCTGAGGGCCCTGCTGTCGC
TACCGCTGTTGCCGCCGCTCCTAGGACAGCCGCGGTTTTTCTCCGCGCGG
CTATCGCTGCCTTTGCCAATGCCATGAACAGGTGCTTATGCCGCTTCCAA
AAGTGCGTCTGCAGTCTTTGCCGCGAAGGCCTCTCCTTCCTGCCTGCCGA
ACCCTGAAGACGGCTATGGCAGTTACATTGTCCCCACCGGAAACAAAGCC
GAAGAATTCGCAGCCCGCACGTGTTCATTCCTCGTTTACCGGACCAAACA
AGCGCCTTCTCTCCTCTCGTCGTTTTCGTTTCGCGCAGGTGGAGAGGCGG
CGCCAGTTGCAGTGGCTGGCGGCCTCCGTCGGCTCGCGGCTCGGCGGCAA
CGGCAGCGGCGGCTTATCCTTCGCAGACAGCGGCTCCGGCGGCAGGGGCG
GCATCGTCACGGCGTCGCTGGATGACATCATCTACGTCTCGAGCGACGAG
AGCGACCTGGGAGAGGCCGACGTCGCCTTTGCCGTCCGGATGGGCATCCC
GCTGGCCGGGCTGGAGGGTACCGACCGCGACGGTGACAGCGCCGGCGACA
GTGACGGCGACGGTGATGAAAACAACGACAGCGGGAGGGACAGCGGCAGT
GAAGATCGTACAGGAAGCGGGGATTCCGGCGGCGGCGAGGACGGCGAGGA
CGGCGAGGGTGACCGCGCCAACAGTGGCATAGTCCGCCGTAGAGACCGAG
AAAGCCGCGACGGACAGGAAAGAAGCAGCGGTGACCGTAACGCTGGTGGT
GGCGGCGGCGACGGTGCCAGCGTCAAAAGCTATGAGGAGGGCCCTCCGGT
CGCCTCAGATCCTGAGCAGGCGTTCTTAGAACCGCCTCCGCCGGACGGCT
CACGCACTTCAGGGGCTGACAAAGCCGTCAGCTTTTCCGCCAATGAAGGC
CGCACCGGTGATCAGACCAGCCAACCTGACATGGACGGCGGCGGAGGTGG
CAATCTCGGCAACGGTGGCGACTGTGGCGGTGGCGGTGGCGGCTTGAAGC
CTGCGGGCCGCCACAGCGCCAGTGTTGCGGCAAGGGATAGCACCAGCAGA
AGCAGCAAAGTCAGGAAGGCTTGGATGCGCGGCAGCGCCGGCAGCGGCGG
AAGTCGCGGCAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16277:63..1326+

>mRNA_P-wetherbeei_contig16277.1.1 ID=mRNA_P-wetherbeei_contig16277.1.1|Name=mRNA_P-wetherbeei_contig16277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=924bp|location=Sequence derived from alignment at P-wetherbeei_contig16277:63..1326+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAGCCGCCGTGAGGCCGGGGAACAGGAGGCCATGGCGCGGGAAGATCG
TGCGAGTCATCTGGAGAACGATGCCTTTGCGCTCCAGCTGGCTGAGATGG
TGGAGAGGCGGCGCCAGTTGCAGTGGCTGGCGGCCTCCGTCGGCTCGCGG
CTCGGCGGCAACGGCAGCGGCGGCTTATCCTTCGCAGACAGCGGCTCCGG
CGGCAGGGGCGGCATCGTCACGGCGTCGCTGGATGACATCATCTACGTCT
CGAGCGACGAGAGCGACCTGGGAGAGGCCGACGTCGCCTTTGCCGTCCGG
ATGGGCATCCCGCTGGCCGGGCTGGAGGGTACCGACCGCGACGGTGACAG
CGCCGGCGACAGTGACGGCGACGGTGATGAAAACAACGACAGCGGGAGGG
ACAGCGGCAGTGAAGATCGTACAGGAAGCGGGGATTCCGGCGGCGGCGAG
GACGGCGAGGACGGCGAGGGTGACCGCGCCAACAGTGGCATAGTCCGCCG
TAGAGACCGAGAAAGCCGCGACGGACAGGAAAGAAGCAGCGGTGACCGTA
ACGCTGGTGGTGGCGGCGGCGACGGTGCCAGCGTCAAAAGCTATGAGGAG
GGCCCTCCGGTCGCCTCAGATCCTGAGCAGGCGTTCTTAGAACCGCCTCC
GCCGGACGGCTCACGCACTTCAGGGGCTGACAAAGCCGTCAGCTTTTCCG
CCAATGAAGGCCGCACCGGTGATCAGACCAGCCAACCTGACATGGACGGC
GGCGGAGGTGGCAATCTCGGCAACGGTGGCGACTGTGGCGGTGGCGGTGG
CGGCTTGAAGCCTGCGGGCCGCCACAGCGCCAGTGTTGCGGCAAGGGATA
GCACCAGCAGAAGCAGCAAAGTCAGGAAGGCTTGGATGCGCGGCAGCGCC
GGCAGCGGCGGAAGTCGCGGCAGC
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