mRNA_P-wetherbeei_contig16253.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16253.1.1
Unique NamemRNA_P-wetherbeei_contig16253.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16253.1.1 vs. uniprot
Match: Q6XM79_9PHYC (FirrV-1-A8 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM79_9PHYC)

HSP 1 Score: 60.8 bits (146), Expect = 2.620e-9
Identity = 35/108 (32.41%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:   25 IATLPENFTSTQVRDMMKSLERDIRLLNERTPKPSVQQKELMLHKKHVILATAYPLLFHRSIRGAIDETMLDRLFALKTLKDSGKVNDERARELVIDSAKEAIERGDK 348
            I+ LP +FTS ++  M   L +D+               + ++  +H  LA +YP LF+++I+G ++  +L  +  +K L D+GK++ +RARE+V+D AK+ IE   K
Sbjct:    9 ISNLPGSFTSEEIDRMHSDLIKDMEAYR------GHPHFDTVMCARHKTLAFSYPSLFYKTIKGDMEPHLLRSILHIKHLLDTGKISQDRAREMVVDGAKKQIEASQK 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16253.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q6XM79_9PHYC2.620e-932.41FirrV-1-A8 n=1 Tax=Feldmannia irregularis virus a ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16253contigP-wetherbeei_contig16253:145..492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size348
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-130
Ec32 orthologEc-06_005550.1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186081.196908-CDS-P-wetherbeei_contig16253:144..4921683186081.196908-CDS-P-wetherbeei_contig16253:144..492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16253 145..492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16253.1.1prot_P-wetherbeei_contig16253.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16253 145..492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16253.1.1

>prot_P-wetherbeei_contig16253.1.1 ID=prot_P-wetherbeei_contig16253.1.1|Name=mRNA_P-wetherbeei_contig16253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
HAKEVLDTIATLPENFTSTQVRDMMKSLERDIRLLNERTPKPSVQQKELM
LHKKHVILATAYPLLFHRSIRGAIDETMLDRLFALKTLKDSGKVNDERAR
ELVIDSAKEAIERGDK
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mRNA from alignment at P-wetherbeei_contig16253:145..492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16253.1.1 ID=mRNA_P-wetherbeei_contig16253.1.1|Name=mRNA_P-wetherbeei_contig16253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig16253:145..492+ (Phaeothamnion wetherbeei SAG_119_79)
CATGCCAAGGAAGTCCTCGATACGATTGCTACCCTCCCCGAAAACTTCAC
TTCTACGCAAGTCCGGGATATGATGAAATCTTTGGAGAGAGATATCCGTC
TATTAAACGAACGCACTCCAAAGCCAAGCGTGCAACAAAAGGAACTCATG
CTCCACAAGAAGCATGTAATTCTGGCCACTGCATATCCGTTGCTGTTCCA
TCGGTCAATCAGGGGCGCTATCGACGAAACAATGTTGGACCGTCTCTTTG
CTCTTAAGACGCTAAAAGATTCGGGAAAAGTGAACGACGAGCGCGCACGA
GAGCTTGTCATTGATAGCGCAAAAGAGGCAATTGAGCGCGGTGACAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16253:145..492+

>mRNA_P-wetherbeei_contig16253.1.1 ID=mRNA_P-wetherbeei_contig16253.1.1|Name=mRNA_P-wetherbeei_contig16253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig16253:145..492+ (Phaeothamnion wetherbeei SAG_119_79)
CATGCCAAGGAAGTCCTCGATACGATTGCTACCCTCCCCGAAAACTTCAC
TTCTACGCAAGTCCGGGATATGATGAAATCTTTGGAGAGAGATATCCGTC
TATTAAACGAACGCACTCCAAAGCCAAGCGTGCAACAAAAGGAACTCATG
CTCCACAAGAAGCATGTAATTCTGGCCACTGCATATCCGTTGCTGTTCCA
TCGGTCAATCAGGGGCGCTATCGACGAAACAATGTTGGACCGTCTCTTTG
CTCTTAAGACGCTAAAAGATTCGGGAAAAGTGAACGACGAGCGCGCACGA
GAGCTTGTCATTGATAGCGCAAAAGAGGCAATTGAGCGCGGTGACAAG
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