mRNA_P-wetherbeei_contig1625.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1625.1.1
Unique NamemRNA_P-wetherbeei_contig1625.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1625.1.1 vs. uniprot
Match: A0A352KDS3_9PROT (PaaI family thioesterase n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KDS3_9PROT)

HSP 1 Score: 178 bits (452), Expect = 3.830e-55
Identity = 86/134 (64.18%), Postives = 108/134 (80.60%), Query Frame = 1
Query:   22 LALGYQPILNPVDPFEHVIGPFYARAEPDGGTSYAFQVREDHTNMTGVAHGGMLMSFADTVVAHAAFAANGSDHVVTLSMSASFLAPARVGDLVECRPTLIRKTAEILFVGGEFMVAGAVILSARSLWKTIRMR 423
            +ALGY+P L+PVDP+E +IGPFYAR EP+G  SYAF+V E HTN+  +AHGGMLMSFAD+VVA+AAFAAN     VTLSM+ +FLAP R+GDLVECRP L+RKT EI+FV  +F   G ++L+ +SLWK IR+R
Sbjct:    8 IALGYEPDLSPVDPYEVLIGPFYARPEPEGDYSYAFRVGEQHTNVNEIAHGGMLMSFADSVVANAAFAANDGMPAVTLSMNTTFLAPGRIGDLVECRPRLVRKTREIIFVDADFQARGEILLTVKSLWKVIRLR 141          
BLAST of mRNA_P-wetherbeei_contig1625.1.1 vs. uniprot
Match: A0A7Y8SXE6_9PROT (PaaI family thioesterase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8SXE6_9PROT)

HSP 1 Score: 102 bits (255), Expect = 3.420e-25
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   58 DPFEHVIGPFYARAEPDGGTSYAFQVREDHTNMTGVAHGGMLMSFADTVVAHAAFAANGSDHVVTLSMSASFLAPARVGDLVECRPTLIRKTAEILFVGGEFMVAGAVILSARSLWKTI 414
            DPFE  +GPF+ ++  +   ++AF+V E H N+ GV HGGMLM+FAD+ +  AA+AA      VT SM + FL PAR+GDLV   P + R+T E++F+ G+FMV   +I +  S+WK +
Sbjct:   33 DPFEIYVGPFF-QSLGNRPRAHAFRVDERHLNLQGVCHGGMLMTFADSSLGLAAWAATDRAPCVTASMQSQFLKPARLGDLVVVTPEVTRRTRELVFIRGDFMVGDTMIATVSSIWKLL 150          
BLAST of mRNA_P-wetherbeei_contig1625.1.1 vs. uniprot
Match: A0A3B9YZM4_9PROT (PaaI family thioesterase n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9YZM4_9PROT)

HSP 1 Score: 100 bits (248), Expect = 3.580e-24
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1
Query:   58 DPFEHVIGPFYARAEPDGGTSYAFQVREDHTNMTGVAHGGMLMSFADTVVAHAAFAANGSDHVVTLSMSASFLAPARVGDLVECRPTLIRKTAEILFVGGEFMVAGAVILSARSLWKTI 414
            DPFE  +GP++ R  PDG     F V + HTN++G AHGG LM+F+D V+    +        VT+S   +F+   R+GD V CRP L+R+T EI+FV G+F     ++ +A+S WK +
Sbjct:   28 DPFEAFMGPYFVRF-PDGQREMGFFVDDRHTNVSGYAHGGALMTFSDAVLGFKVWDETDRAPCVTISQQTNFVGSGRLGDFVVCRPVLVRRTREIVFVRGDFFAGDKIVFTAQSAWKIL 145          
BLAST of mRNA_P-wetherbeei_contig1625.1.1 vs. uniprot
Match: A0A7Y4T7Q3_9PROT (PaaI family thioesterase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y4T7Q3_9PROT)

HSP 1 Score: 99.0 bits (245), Expect = 9.610e-24
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   58 DPFEHVIGPFYARAEPDGGTSYAFQVREDHTNMTGVAHGGMLMSFADTVVAHAAFAANGSDHVVTLSMSASFLAPARVGDLVECRPTLIRKTAEILFVGGEFMVAGAVILSARSLWK 408
            DPFE  +GP++ R   D    +AF V + HTN  G+AHGG L++FAD  + +A + A      VT+S  ++FL+ A VGDL+ CRP ++RKT EI+F+  +F      I +A ++WK
Sbjct:   28 DPFEAYLGPYFHRIA-DAAHEFAFIVDDRHTNAAGIAHGGALLTFADAALGYALWNATDRAPCVTVSQQSNFLSAANVGDLIACRPEVVRKTREIVFMRADFKAGDRTIFTAAAVWK 143          
BLAST of mRNA_P-wetherbeei_contig1625.1.1 vs. uniprot
Match: A0A8D5WPL4_9PROT (4HBT domain-containing protein n=1 Tax=Alphaproteobacteria bacterium SO-S41 TaxID=2829083 RepID=A0A8D5WPL4_9PROT)

HSP 1 Score: 93.6 bits (231), Expect = 1.860e-21
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   31 GYQPILNPVDPFEHVIGPFYARAEPDGGTSYAFQVREDHTNMTGVAHGGMLMSFADTVVAHAAFAANGSD-HVVTLSMSASFLAPARVGDLVECRPTLIRKTAEILFVGGEFMVAGAVILSARSLWK 408
            GY   +  VDPFE      + R   DG TS+A  +   H N  GVAHGG+LM+FAD+V+  AA++A       VT+S S+SFL   ++GDL+E  P + R T  ++F  G+F V G  +  A S+WK
Sbjct:   31 GYPTAVPLVDPFEAFAFQSFQRTNDDGTTSFALPIDARHDNTRGVAHGGLLMAFADSVLGFAAWSACPPGIWCVTVSQSSSFLKGVKIGDLLEVTPVVSRATRTMIFTRGDFTVGGEPVFQASSVWK 157          
BLAST of mRNA_P-wetherbeei_contig1625.1.1 vs. uniprot
Match: UPI0009FC389A (PaaI family thioesterase n=1 Tax=Roseivivax halodurans TaxID=93683 RepID=UPI0009FC389A)

HSP 1 Score: 92.4 bits (228), Expect = 2.600e-21
Identity = 51/126 (40.48%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   46 LNPVDPFEHVIGPFYARAEPDGGTSYAFQVREDHTNMTGVAHGGMLMSFADTVVAHAAFAANGSDHVVTLSMSASFLAPARVGDLVECRPTLIRKTAEILFVGGEFMVAGAVILSARSLWKTIRMR 423
            L+P D F   +G  + R   DG T +AF  R  H N  GV HGGMLM+FAD  + H A  A G+    T+S++  FLAP R+GDL+E  P + RK+A ++F+     V  A ++SA+ +W+    R
Sbjct:   12 LDPDDGFVGHVGGLWRRVV-DGQTQFAFIARGIHANRNGVVHGGMLMTFADRALGHTARHAAGAIRGATISLTHQFLAPVRIGDLIEMTPQVTRKSARMVFLTATAFVGEAPVVSAQGVWRVTHSR 136          
BLAST of mRNA_P-wetherbeei_contig1625.1.1 vs. uniprot
Match: A0A2E8J7G6_9GAMM (Thioesterase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8J7G6_9GAMM)

HSP 1 Score: 91.7 bits (226), Expect = 5.070e-21
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:   58 DPFEHVIGPFYARAEPDGGTSYAFQVREDHTNMTGVAHGGMLMSFADTVVAHAAFAANGSDHVVTLSMSASFLAPARVGDLVECRPTLIRKTAEILFVGGEFMVAGAVILSARSLWKTIR 417
            DP E  IGPFY +  PD  T YAF   E H N+  + HGG+LM+F+D  +   A      +  V++S S  F++ ARVGDL+ECR  LIRKT  + FV GE  V    IL+  S+ K ++
Sbjct:   14 DPAEDHIGPFYYKQAPDNRT-YAFVAEEKHCNVVSLVHGGVLMTFSDFSLCMEATDHYREEDCVSVSFSCEFVSSARVGDLIECRTKLIRKTRSLAFVTGEVFVGDETILTFSSVVKRLK 132          
BLAST of mRNA_P-wetherbeei_contig1625.1.1 vs. uniprot
Match: A0A2E8KBM6_9GAMM (Thioesterase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8KBM6_9GAMM)

HSP 1 Score: 90.1 bits (222), Expect = 1.970e-20
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   58 DPFEHVIGPFYARAEPDGGTSYAFQVREDHTNMTGVAHGGMLMSFADTVVAHAAFAANGSDHVVTLSMSASFLAPARVGDLVECRPTLIRKTAEILFVGGEFMVAGAVILSARSLWKTI 414
            DP E  IGPFY + +PD  T YAF   + H N+  + HGG+LM+FAD  +   A     S+  V++S S  F++ ARVGDL+ECR +L RKT  + FV GE  V    +++  S+ K +
Sbjct:   14 DPAEDYIGPFYYQHKPDHRT-YAFVAEDRHCNVVNLVHGGVLMTFADFSLCMEATDHYRSEDCVSVSFSCEFVSSARVGDLIECRTSLTRKTRSLAFVTGEIFVGDEAVMTFSSVVKRL 131          
BLAST of mRNA_P-wetherbeei_contig1625.1.1 vs. uniprot
Match: A0A2U8VXY3_9HYPH (PaaI family thioesterase n=1 Tax=Methylobacterium radiodurans TaxID=2202828 RepID=A0A2U8VXY3_9HYPH)

HSP 1 Score: 88.2 bits (217), Expect = 1.370e-19
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 1
Query:   76 IGPFYARAEPDGGTSYAFQVREDHTNMTGVAHGGMLMSFADTVVAHAAFAANGSDHVVTLSMSASFLAPARVGDLVECRPTLIRKTAEILFVGGEFMVAGAVILSARSLWKTIRMR 423
            +GP Y RA  DG  +YAF+  E H N+  V HGGMLMSFAD  +   A AA    + VT+ M   F+  AR+GD +E RP ++R+T  ++F+  + M A   +  A  +WK +R R
Sbjct:   26 VGPVYRRA--DG--AYAFRAAEKHANLIRVVHGGMLMSFADRALGETAMAAADGANCVTVQMEMQFIDAARLGDWIETRPEVLRRTGSLVFLRTDLMAAERRVAYASGVWKILRRR 137          
BLAST of mRNA_P-wetherbeei_contig1625.1.1 vs. uniprot
Match: A0A5C8PRM1_9HYPH (PaaI family thioesterase n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PRM1_9HYPH)

HSP 1 Score: 86.7 bits (213), Expect = 7.960e-19
Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   43 ILNPVDPFEHVIGPFYARAEPDGGT-SYAFQVREDHTNMTGVAHGGMLMSFADTVVAHAAFAANGSDHVVTLSMSASFLAPARVGDLVECRPTLIRKTAEILFVGGEFMVAGAVILSARSLWKTI 414
            +L     F  ++GP Y R   DG T ++ F+V + H N+ G+ HGGML++FAD  +   AF A G     T+ ++ASF+AP R GD +EC   + R T E++FV G        ++  + +WK +
Sbjct:   21 LLRDASGFGGLVGPLYIRKPRDGRTFAWGFRVADKHLNIGGIVHGGMLVTFADQCLGALAFFAAGKQPSSTVDLAASFVAPGRPGDWIECTGAVSRVTRELVFVTGRVTADDRTLVELKGIWKRL 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1625.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A352KDS3_9PROT3.830e-5564.18PaaI family thioesterase n=3 Tax=Alphaproteobacter... [more]
A0A7Y8SXE6_9PROT3.420e-2545.38PaaI family thioesterase n=1 Tax=Alphaproteobacter... [more]
A0A3B9YZM4_9PROT3.580e-2441.18PaaI family thioesterase n=2 Tax=Alphaproteobacter... [more]
A0A7Y4T7Q3_9PROT9.610e-2441.88PaaI family thioesterase n=1 Tax=Alphaproteobacter... [more]
A0A8D5WPL4_9PROT1.860e-2141.734HBT domain-containing protein n=1 Tax=Alphaproteo... [more]
UPI0009FC389A2.600e-2140.48PaaI family thioesterase n=1 Tax=Roseivivax halodu... [more]
A0A2E8J7G6_9GAMM5.070e-2143.33Thioesterase n=1 Tax=Gammaproteobacteria bacterium... [more]
A0A2E8KBM6_9GAMM1.970e-2042.02Thioesterase n=1 Tax=Gammaproteobacteria bacterium... [more]
A0A2U8VXY3_9HYPH1.370e-1941.38PaaI family thioesterase n=1 Tax=Methylobacterium ... [more]
A0A5C8PRM1_9HYPH7.960e-1936.00PaaI family thioesterase n=1 Tax=Vineibacter terra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1625contigP-wetherbeei_contig1625:83..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog402881.Plav_0491
PFAMs4HBT
Model size423
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.66e-23
EggNOG OGsCOG2050@1|root,COG2050@2|Bacteria,1NA0B@1224|Proteobacteria,2UI6H@28211|Alphaproteobacteria,1JQFI@119043|Rhodobiaceae
DescriptionThioesterase superfamily
Cds size423
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186081.07027-CDS-P-wetherbeei_contig1625:82..5051683186081.07027-CDS-P-wetherbeei_contig1625:82..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1625 83..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1625.1.1prot_P-wetherbeei_contig1625.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1625 83..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1625.1.1

>prot_P-wetherbeei_contig1625.1.1 ID=prot_P-wetherbeei_contig1625.1.1|Name=mRNA_P-wetherbeei_contig1625.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
MTGERTALALGYQPILNPVDPFEHVIGPFYARAEPDGGTSYAFQVREDHT
NMTGVAHGGMLMSFADTVVAHAAFAANGSDHVVTLSMSASFLAPARVGDL
VECRPTLIRKTAEILFVGGEFMVAGAVILSARSLWKTIRMR
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mRNA from alignment at P-wetherbeei_contig1625:83..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1625.1.1 ID=mRNA_P-wetherbeei_contig1625.1.1|Name=mRNA_P-wetherbeei_contig1625.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig1625:83..505- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGAGAGCGTACCGCATTGGCATTGGGTTACCAGCCGATCCTCAA CCCGGTTGATCCGTTCGAGCATGTCATCGGGCCATTTTATGCACGGGCGG AACCGGATGGCGGCACATCCTATGCGTTTCAGGTGCGCGAGGACCACACC AACATGACCGGTGTCGCGCATGGCGGCATGCTGATGAGCTTTGCTGATAC GGTGGTGGCCCATGCGGCGTTTGCGGCCAATGGCAGCGATCATGTGGTGA CCCTTTCCATGAGCGCCTCGTTCCTGGCTCCGGCGCGGGTGGGCGATCTG GTCGAATGCAGGCCCACACTGATTCGCAAGACGGCGGAGATTTTGTTCGT AGGCGGAGAATTTATGGTTGCGGGCGCGGTTATTTTGTCGGCCAGAAGCC TTTGGAAAACCATCCGCATGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1625:83..505-

>mRNA_P-wetherbeei_contig1625.1.1 ID=mRNA_P-wetherbeei_contig1625.1.1|Name=mRNA_P-wetherbeei_contig1625.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig1625:83..505- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGAGAGCGTACCGCATTGGCATTGGGTTACCAGCCGATCCTCAA
CCCGGTTGATCCGTTCGAGCATGTCATCGGGCCATTTTATGCACGGGCGG
AACCGGATGGCGGCACATCCTATGCGTTTCAGGTGCGCGAGGACCACACC
AACATGACCGGTGTCGCGCATGGCGGCATGCTGATGAGCTTTGCTGATAC
GGTGGTGGCCCATGCGGCGTTTGCGGCCAATGGCAGCGATCATGTGGTGA
CCCTTTCCATGAGCGCCTCGTTCCTGGCTCCGGCGCGGGTGGGCGATCTG
GTCGAATGCAGGCCCACACTGATTCGCAAGACGGCGGAGATTTTGTTCGT
AGGCGGAGAATTTATGGTTGCGGGCGCGGTTATTTTGTCGGCCAGAAGCC
TTTGGAAAACCATCCGCATGCGG
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