mRNA_P-wetherbeei_contig1623.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1623.1.1
Unique NamemRNA_P-wetherbeei_contig1623.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1623.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1623contigP-wetherbeei_contig1623:110..1705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1239
Hectar predicted targeting categoryother localisation
Exons2
Cds size960
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.8000383-UTR-P-wetherbeei_contig1623:109..3881683186080.8000383-UTR-P-wetherbeei_contig1623:109..388Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1623 110..388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.8080137-CDS-P-wetherbeei_contig1623:388..5951683186080.8080137-CDS-P-wetherbeei_contig1623:388..595Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1623 389..595 +
1683186080.8156676-CDS-P-wetherbeei_contig1623:952..17051683186080.8156676-CDS-P-wetherbeei_contig1623:952..1705Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1623 953..1705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1623.1.1prot_P-wetherbeei_contig1623.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1623 389..1705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1623.1.1

>prot_P-wetherbeei_contig1623.1.1 ID=prot_P-wetherbeei_contig1623.1.1|Name=mRNA_P-wetherbeei_contig1623.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
MRLAGMSVPPVLCQPPTDFRYPIFLRELRPMSDFKAWTDLEPRCGDRGAD
GGRFSIHIWGGGTAEDVVEISFLLAHGKEEARLVGYYIRPDAPRAIGYPV
IAANASAVDLDETGSFWVELPADALLALEPYSHHAVVRSRSGAEYNTRSI
DSDRWPALLRCPAAAPAAAAANASAAASEATASAGGAGNDSPDTMVESSG
TAAGHRTVTGVGGVFLALLVGGLLAAMAALSVALLARKFNRYRSGGGGTS
SGGGGPFSGGARRYQITDAYDREEDEFALHYNETSPKSVRGGSFGGGIHG
SRSIESSPPNCGGGGFGGGH
back to top

mRNA from alignment at P-wetherbeei_contig1623:110..1705+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1623.1.1 ID=mRNA_P-wetherbeei_contig1623.1.1|Name=mRNA_P-wetherbeei_contig1623.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1596bp|location=Sequence derived from alignment at P-wetherbeei_contig1623:110..1705+ (Phaeothamnion wetherbeei SAG_119_79)
CGAGGCATGCGCGTCGCGCTGCTTTTTAAGGGGATCCCAGCGGGCCCGCC
GCGTCCGGGGTGTGGGCGCGGAGAGAGACGGTAGGGGGAGGCGGAGCCAT
CTGCATGCGGCGGTGATAGCGACGGCGGCGGCGGCGGAGGCGACGGTTCT
TGGGCGACTGAGGGAGTGTGAGTGAAGAAGCCATGACGGTCGGCCGCGCT
TGCCGCTTTCGTGGCGCTGGGCGCTCCGCATCGTTTGTTGTTCTTGCGCG
CTTGCGGCCGCATAACATACCTCTAGACCATGCGATTGGCAGGAATGTCA
GTGCCACCTGTCCTTTGTCAGCCTCCAACGGATTTCCGTTACCCTATTTT
TTTGAGAGAACTTCGGCCAATGTCGGACTTCAAGGCGTGGACTGACCTCG
AACCTCGATGCGGTGACCGAGGCGCGGACGGCGGGCGCTTTTCCATTCAC
ATTTGGGGAGGTGGAACGGCGGAAGACGTCGTCGAGGTAAGGGAACCACA
TGAGCTGTGGTAGTCTCAATTAAACTTTTGTTCAGACATGGATGACAGCT
TTTCTATCCAGTGCTGGCAGAGTTTGCTTGAAATTCGGTTTGTGGCCAAA
ATACGCTTTCGCCAAAATATTGCGCTTCCTCTCTCCTACCCGTGCTCCTC
TTGGGCGAAGCCAATGAACTTGTGGTATGTCTGAAGCATCGCCGACTCTC
GAAGCTATGCCCTGAATGGATTATGCAGCATTTGATGGCCTTAGAAGCAT
CGAAAAATGTGGTGCGCTGTCCAACCCTTTAATCTCCTCCACCATGCACT
CATCTCTTCCCAACCACTCCTTCTTCCTTCTTGCTTCCACCAGATCTCGT
TCTTGCTCGCGCACGGCAAGGAAGAGGCGCGCCTCGTCGGCTACTACATC
CGACCAGATGCACCACGCGCCATCGGCTACCCGGTGATTGCGGCGAACGC
CAGCGCCGTCGATCTCGACGAAACGGGCTCCTTCTGGGTGGAGCTTCCTG
CAGATGCGCTGCTGGCGCTGGAACCGTACAGCCACCACGCCGTCGTCCGC
AGCCGGAGCGGTGCCGAATACAACACACGTTCCATCGATTCGGACAGATG
GCCGGCCCTCCTCCGGTGCCCGGCCGCAGCCCCCGCCGCCGCTGCCGCGA
ACGCCTCAGCCGCGGCTTCCGAAGCCACGGCAAGCGCCGGCGGAGCCGGG
AATGACAGCCCTGACACGATGGTCGAATCCAGCGGCACAGCGGCGGGCCA
CCGGACGGTAACGGGCGTCGGCGGCGTCTTCTTAGCGCTGCTCGTTGGCG
GCCTGCTCGCGGCGATGGCGGCGCTGAGCGTGGCGCTGCTGGCGCGAAAG
TTCAACAGATACAGAAGCGGCGGCGGCGGCACCAGCAGCGGCGGTGGCGG
CCCCTTTAGCGGAGGCGCAAGAAGATACCAAATCACCGATGCATACGACC
GAGAAGAGGACGAATTCGCCCTCCATTACAACGAAACGAGCCCCAAGTCC
GTGCGCGGCGGGAGCTTTGGCGGCGGCATTCACGGCAGCCGCAGTATTGA
AAGCAGCCCACCGAACTGTGGCGGCGGTGGGTTTGGCGGCGGCCAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1623:110..1705+

>mRNA_P-wetherbeei_contig1623.1.1 ID=mRNA_P-wetherbeei_contig1623.1.1|Name=mRNA_P-wetherbeei_contig1623.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig1623:110..1705+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGATTGGCAGGAATGTCAGTGCCACCTGTCCTTTGTCAGCCTCCAAC
GGATTTCCGTTACCCTATTTTTTTGAGAGAACTTCGGCCAATGTCGGACT
TCAAGGCGTGGACTGACCTCGAACCTCGATGCGGTGACCGAGGCGCGGAC
GGCGGGCGCTTTTCCATTCACATTTGGGGAGGTGGAACGGCGGAAGACGT
CGTCGAGATCTCGTTCTTGCTCGCGCACGGCAAGGAAGAGGCGCGCCTCG
TCGGCTACTACATCCGACCAGATGCACCACGCGCCATCGGCTACCCGGTG
ATTGCGGCGAACGCCAGCGCCGTCGATCTCGACGAAACGGGCTCCTTCTG
GGTGGAGCTTCCTGCAGATGCGCTGCTGGCGCTGGAACCGTACAGCCACC
ACGCCGTCGTCCGCAGCCGGAGCGGTGCCGAATACAACACACGTTCCATC
GATTCGGACAGATGGCCGGCCCTCCTCCGGTGCCCGGCCGCAGCCCCCGC
CGCCGCTGCCGCGAACGCCTCAGCCGCGGCTTCCGAAGCCACGGCAAGCG
CCGGCGGAGCCGGGAATGACAGCCCTGACACGATGGTCGAATCCAGCGGC
ACAGCGGCGGGCCACCGGACGGTAACGGGCGTCGGCGGCGTCTTCTTAGC
GCTGCTCGTTGGCGGCCTGCTCGCGGCGATGGCGGCGCTGAGCGTGGCGC
TGCTGGCGCGAAAGTTCAACAGATACAGAAGCGGCGGCGGCGGCACCAGC
AGCGGCGGTGGCGGCCCCTTTAGCGGAGGCGCAAGAAGATACCAAATCAC
CGATGCATACGACCGAGAAGAGGACGAATTCGCCCTCCATTACAACGAAA
CGAGCCCCAAGTCCGTGCGCGGCGGGAGCTTTGGCGGCGGCATTCACGGC
AGCCGCAGTATTGAAAGCAGCCCACCGAACTGTGGCGGCGGTGGGTTTGG
CGGCGGCCAC
back to top