mRNA_P-wetherbeei_contig16222.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16222.1.1
Unique NamemRNA_P-wetherbeei_contig16222.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig16222.1.1 vs. uniprot
Match: A0A812UNE2_SYMMI (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UNE2_SYMMI)

HSP 1 Score: 348 bits (892), Expect = 5.820e-119
Identity = 155/197 (78.68%), Postives = 172/197 (87.31%), Query Frame = 1 
Query:   49 VEQKVSFPEEERKVLQYWDKIEAFKMSLKLSEGRPEYTFYDGPPFATGLPHFGHILAGTIKDAVTRYAHQTGHHVERRFGWDCHGLPVEYEIDQALNIKGRHQVLEMGIGTYNNHCRGIVQRYTSEWEKTVKRLGRWIDFDNDYKTMDPEFMESVWWVFKTLHGKGLVYRGVKVMPYSTKCATPLSNFEAGQNYKDV 639
            V  K++F +EE  +L+YW +I+AF ++LKLSEGRPEYTFYDGPPFATG+PH+GHILAGTIKD VTRYAHQTGH V RRFGWDCHGLP+EYEID+ L I  R+QVLEMG+GTYN+ CR IVQRYT EWEKTV RLGRWIDF NDYKTMD +FMESVWWVFK L  KGLVYRG KVMPYST CATPLSNFEAGQNYKDV
Sbjct:    8 VSDKLNFSQEEENILEYWREIDAFNLTLKLSEGRPEYTFYDGPPFATGMPHYGHILAGTIKDTVTRYAHQTGHFVSRRFGWDCHGLPIEYEIDKTLGITDRNQVLEMGVGTYNDACRAIVQRYTKEWEKTVTRLGRWIDFKNDYKTMDKDFMESVWWVFKCLFDKGLVYRGYKVMPYSTACATPLSNFEAGQNYKDV 204
[Close]
BLAST of mRNA_P-wetherbeei_contig16222.1.1 vs. uniprot
Match: A0A7S1XPX7_9STRA (Isoleucine--tRNA ligase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPX7_9STRA)

HSP 1 Score: 329 bits (843), Expect = 1.900e-111
Identity = 149/194 (76.80%), Postives = 164/194 (84.54%), Query Frame = 1 
Query:   61 VSFPEEERKVLQYWDKIEAFKMSLKLSEGRPEYTFYDGPPFATGLPHFGHILAGTIKDAVTRYAHQTGHHVERRFGWDCHGLPVEYEIDQALNIKGRHQVLEMGIGTYNNHCRGIVQRYTSEWEKTVKRLGRWIDFDNDYKTMDPEFMESVWWVFKTLHGKGLVYRGVKVMPYSTKCATPLSNFEAGQNYKDVR 642
            VSFPEEE KV  +WD+I AF  SL+LS+ R  +TFYDGPPFATGLPH+GHILAGTIKD VTRYAHQTGH+VERRFGWDCHGLPVE+EID+ LNIK R QVLEMGI  YNN CR IVQRYT EW   V+RLGRWIDFDNDYKTMD  FME++WWVF  LH + LVY G KVMPYST C+TPLSNFEAGQNYKDV+
Sbjct:   14 VSFPEEEAKVKAFWDEIGAFHRSLELSKDRKRFTFYDGPPFATGLPHYGHILAGTIKDTVTRYAHQTGHYVERRFGWDCHGLPVEHEIDKKLNIKTREQVLEMGIENYNNECRSIVQRYTGEWRTMVERLGRWIDFDNDYKTMDVTFMETIWWVFSELHKRNLVYYGFKVMPYSTGCSTPLSNFEAGQNYKDVK 207
[Close]
BLAST of mRNA_P-wetherbeei_contig16222.1.1 vs. uniprot
Match: A0A7S3GN89_9STRA (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN89_9STRA)

HSP 1 Score: 347 bits (890), Expect = 1.900e-110
Identity = 156/194 (80.41%), Postives = 166/194 (85.57%), Query Frame = 1 
Query:   58 KVSFPEEERKVLQYWDKIEAFKMSLKLSEGRPEYTFYDGPPFATGLPHFGHILAGTIKDAVTRYAHQTGHHVERRFGWDCHGLPVEYEIDQALNIKGRHQVLEMGIGTYNNHCRGIVQRYTSEWEKTVKRLGRWIDFDNDYKTMDPEFMESVWWVFKTLHGKGLVYRGVKVMPYSTKCATPLSNFEAGQNYKDV 639
            K+SFP EE K L YW +I+AFK SLKLSE +PEYTFYDGPPFATGLPH+GHILAGTIKD VTR+AHQTGHHV RRFGWDCHGLPVEYEIDQ L I GR  VL+MG+  YN  CRGIV RYT+EWEKTV RLGRWIDF NDYKTMDPEFMESVWWVF T+  KGLVYRG KVMPYST C TPLSNFEAG NYKDV
Sbjct:   20 KISFPAEEEKTLAYWTEIDAFKTSLKLSENKPEYTFYDGPPFATGLPHYGHILAGTIKDTVTRFAHQTGHHVSRRFGWDCHGLPVEYEIDQKLKITGRQMVLDMGVANYNAECRGIVTRYTAEWEKTVNRLGRWIDFKNDYKTMDPEFMESVWWVFDTMFKKGLVYRGYKVMPYSTYCGTPLSNFEAGLNYKDV 213
[Close]
BLAST of mRNA_P-wetherbeei_contig16222.1.1 vs. uniprot
Match: A0A7S1U228_9STRA (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U228_9STRA)

HSP 1 Score: 329 bits (843), Expect = 6.670e-110
Identity = 149/194 (76.80%), Postives = 164/194 (84.54%), Query Frame = 1 
Query:   61 VSFPEEERKVLQYWDKIEAFKMSLKLSEGRPEYTFYDGPPFATGLPHFGHILAGTIKDAVTRYAHQTGHHVERRFGWDCHGLPVEYEIDQALNIKGRHQVLEMGIGTYNNHCRGIVQRYTSEWEKTVKRLGRWIDFDNDYKTMDPEFMESVWWVFKTLHGKGLVYRGVKVMPYSTKCATPLSNFEAGQNYKDVR 642
            VSFPEEE KV  +WD+I AF  SL+LS+ R  +TFYDGPPFATGLPH+GHILAGTIKD VTRYAHQTGH+VERRFGWDCHGLPVE+EID+ LNIK R QVLEMGI  YNN CR IVQRYT EW   V+RLGRWIDFDNDYKTMD  FME++WWVF  LH + LVY G KVMPYST C+TPLSNFEAGQNYKDV+
Sbjct:   14 VSFPEEEAKVKAFWDEIGAFHRSLELSKDRKRFTFYDGPPFATGLPHYGHILAGTIKDTVTRYAHQTGHYVERRFGWDCHGLPVEHEIDKKLNIKTREQVLEMGIENYNNECRSIVQRYTGEWRTMVERLGRWIDFDNDYKTMDVTFMETIWWVFSELHKRNLVYYGFKVMPYSTGCSTPLSNFEAGQNYKDVK 207
[Close]
BLAST of mRNA_P-wetherbeei_contig16222.1.1 vs. uniprot
Match: A0A7S3ZMQ5_9STRA (Isoleucine--tRNA ligase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMQ5_9STRA)

HSP 1 Score: 337 bits (865), Expect = 2.110e-108
Identity = 150/193 (77.72%), Postives = 166/193 (86.01%), Query Frame = 1 
Query:   61 VSFPEEERKVLQYWDKIEAFKMSLKLSEGRPEYTFYDGPPFATGLPHFGHILAGTIKDAVTRYAHQTGHHVERRFGWDCHGLPVEYEIDQALNIKGRHQVLEMGIGTYNNHCRGIVQRYTSEWEKTVKRLGRWIDFDNDYKTMDPEFMESVWWVFKTLHGKGLVYRGVKVMPYSTKCATPLSNFEAGQNYKDV 639
            ++FPEEE  +L+YW +I+AF+ S+ LS G+PEYTFYDGPPFATGLPH+GHILAGTIKD VTRYAHQTGH V RRFGWDCHGLPVEYEID+AL +  R +VL MGIG YN+HCR IVQRYT EWE  V RLGRWIDF+NDY+TMD  FMESVWWVFKTL  KGLVYRG KVMPYST CATPLSNFEAG NYKDV
Sbjct:   20 LNFPEEEEVILRYWKEIDAFRTSISLSAGKPEYTFYDGPPFATGLPHYGHILAGTIKDTVTRYAHQTGHKVSRRFGWDCHGLPVEYEIDKALGLNSREEVLAMGIGVYNSHCRSIVQRYTREWETVVTRLGRWIDFENDYRTMDLSFMESVWWVFKTLFDKGLVYRGYKVMPYSTTCATPLSNFEAGLNYKDV 212
[Close]
BLAST of mRNA_P-wetherbeei_contig16222.1.1 vs. uniprot
Match: A0A8J4AW17_9CHLO (Isoleucine--tRNA ligase n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AW17_9CHLO)

HSP 1 Score: 333 bits (854), Expect = 6.100e-108
Identity = 146/192 (76.04%), Postives = 165/192 (85.94%), Query Frame = 1 
Query:   64 SFPEEERKVLQYWDKIEAFKMSLKLSEGRPEYTFYDGPPFATGLPHFGHILAGTIKDAVTRYAHQTGHHVERRFGWDCHGLPVEYEIDQALNIKGRHQVLEMGIGTYNNHCRGIVQRYTSEWEKTVKRLGRWIDFDNDYKTMDPEFMESVWWVFKTLHGKGLVYRGVKVMPYSTKCATPLSNFEAGQNYKDV 639
            SFP+EE K+L  WD+++AFK  L+ +EG+PEY FYDGPPFATGLPH+GHILAGT+KD VTRYA  TGHHV RRFGWDCHGLPVEYEID+ LN+K R  VL+MGIGTYN  CR IV RY+ EWEKTVKRLGRWIDF+NDYKT+DP FMESVWWVF  L+ KGLVYRG KVMP+ST C+TPLSNFEAG NYKDV
Sbjct:   13 SFPKEEEKILSLWDRLDAFKEQLRRTEGKPEYIFYDGPPFATGLPHYGHILAGTLKDIVTRYAAATGHHVTRRFGWDCHGLPVEYEIDKKLNVKSRDDVLKMGIGTYNEECRSIVMRYSKEWEKTVKRLGRWIDFENDYKTLDPSFMESVWWVFSQLYEKGLVYRGFKVMPFSTACSTPLSNFEAGLNYKDV 204
[Close]
BLAST of mRNA_P-wetherbeei_contig16222.1.1 vs. uniprot
Match: F0YNH0_AURAN (Isoleucine--tRNA ligase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNH0_AURAN)

HSP 1 Score: 340 bits (873), Expect = 1.590e-106
Identity = 152/193 (78.76%), Postives = 166/193 (86.01%), Query Frame = 1 
Query:   61 VSFPEEERKVLQYWDKIEAFKMSLKLSEGRPEYTFYDGPPFATGLPHFGHILAGTIKDAVTRYAHQTGHHVERRFGWDCHGLPVEYEIDQALNIKGRHQVLEMGIGTYNNHCRGIVQRYTSEWEKTVKRLGRWIDFDNDYKTMDPEFMESVWWVFKTLHGKGLVYRGVKVMPYSTKCATPLSNFEAGQNYKDV 639
            ++FPEEE  +L YW +I+AF+ S+KLS G+PEYTFYDGPPFATGLPH+GHILAGTIKD VTRYAHQTGH V RRFGWDCHGLPVEYEID+AL +  R +VL MGIGTYN+HCR IVQRYT EWE  V RLGRWIDF NDY+TMD  FMESVWWVFKTL  KGLVYRG KVMPYST CATPLSNFEAG NYKDV
Sbjct:    1 MNFPEEEEAILAYWKRIDAFQTSVKLSSGKPEYTFYDGPPFATGLPHYGHILAGTIKDTVTRYAHQTGHRVSRRFGWDCHGLPVEYEIDKALGLSSRDEVLAMGIGTYNSHCRSIVQRYTGEWETVVTRLGRWIDFKNDYRTMDVNFMESVWWVFKTLFDKGLVYRGYKVMPYSTACATPLSNFEAGLNYKDV 193
[Close]
BLAST of mRNA_P-wetherbeei_contig16222.1.1 vs. uniprot
Match: UPI0009A2F1EE (isoleucine--tRNA ligase, cytoplasmic-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2F1EE)

HSP 1 Score: 315 bits (807), Expect = 1.970e-106
Identity = 141/198 (71.21%), Postives = 161/198 (81.31%), Query Frame = 1 
Query:   49 VEQKVSFPEEERKVLQYWDKIEAFKMSLKLSEGRPEYTFYDGPPFATGLPHFGHILAGTIKDAVTRYAHQTGHHVERRFGWDCHGLPVEYEIDQALNIKGRHQVLEMGIGTYNNHCRGIVQRYTSEWEKTVKRLGRWIDFDNDYKTMDPEFMESVWWVFKTLHGKGLVYRGVKVMPYSTKCATPLSNFEAGQNYKDVR 642
            V + ++FP EE ++L+ W + E F+ SLK ++ RP YTFYDGPPFATGLPH+GHILAGTIKD VTR+AHQ+G  VERRFGWDCHGLPVEYEID+ L IKG   V  MGI  YN HCRGIV RY+SEWE  V RLGRWIDF NDYKT+ P FMESVWWVFK L+ KGLVYRGVKVMP+ST C TPLSNFE+ QNYKDV+
Sbjct:    5 VPETINFPAEEEQILKIWKQYECFQESLKQAKNRPRYTFYDGPPFATGLPHYGHILAGTIKDIVTRFAHQSGFSVERRFGWDCHGLPVEYEIDKTLGIKGPEDVATMGIAEYNRHCRGIVMRYSSEWESAVTRLGRWIDFKNDYKTLYPSFMESVWWVFKQLYDKGLVYRGVKVMPFSTACNTPLSNFESHQNYKDVQ 202
[Close]
BLAST of mRNA_P-wetherbeei_contig16222.1.1 vs. uniprot
Match: A0A7S1L9U1_NEODS (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1L9U1_NEODS)

HSP 1 Score: 316 bits (810), Expect = 4.030e-106
Identity = 140/195 (71.79%), Postives = 159/195 (81.54%), Query Frame = 1 
Query:   55 QKVSFPEEERKVLQYWDKIEAFKMSLKLSEGRPEYTFYDGPPFATGLPHFGHILAGTIKDAVTRYAHQTGHHVERRFGWDCHGLPVEYEIDQALNIKGRHQVLEMGIGTYNNHCRGIVQRYTSEWEKTVKRLGRWIDFDNDYKTMDPEFMESVWWVFKTLHGKGLVYRGVKVMPYSTKCATPLSNFEAGQNYKDV 639
            +K+ FP  E K+L+YW  I+AFK S+K SEGRPE+TFYDGPPFATGLPH+GHILAGTIKD V R+AHQTGHHVERRFGWDCHGLP+E+EI++AL IK  H V +MGI  YN  CR IV RY+SEWE  V R GRWIDF+NDYKT++  +MESVWWVFK L  KGLVYRG KVMPYST C TPLSNFE   NYKDV
Sbjct:   69 EKLDFPGMEEKILKYWKDIDAFKTSVKKSEGRPEFTFYDGPPFATGLPHYGHILAGTIKDIVCRFAHQTGHHVERRFGWDCHGLPIEFEIEKALGIKSSHDVKKMGIAAYNAECRKIVMRYSSEWETIVSRTGRWIDFENDYKTLNLSYMESVWWVFKQLFDKGLVYRGFKVMPYSTGCTTPLSNFECNMNYKDV 263
[Close]
BLAST of mRNA_P-wetherbeei_contig16222.1.1 vs. uniprot
Match: S4R5V3_PETMA (tRNA-synt_1 domain-containing protein n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4R5V3_PETMA)

HSP 1 Score: 312 bits (799), Expect = 5.970e-106
Identity = 139/195 (71.28%), Postives = 159/195 (81.54%), Query Frame = 1 
Query:   49 VEQKVSFPEEERKVLQYWDKIEAFKMSLKLSEGRPEYTFYDGPPFATGLPHFGHILAGTIKDAVTRYAHQTGHHVERRFGWDCHGLPVEYEIDQALNIKGRHQVLEMGIGTYNNHCRGIVQRYTSEWEKTVKRLGRWIDFDNDYKTMDPEFMESVWWVFKTLHGKGLVYRGVKVMPYSTKCATPLSNFEAGQNYK 633
            V +K++F EEE ++L  W +++AF+ SLK S+ RP+YTFYDGPPFATGLPH+GHILAGTIKD VTR+AHQ+G HV+RRFGWDCHGLPVEYEID+ LNIKG   V +MGI  YNN CR IV RY  EWE TV RLGRWIDF NDYKT+ P FME+VWWVF+ L  KG VY GVKVMPYST C TPLSNFEA QNYK
Sbjct:    5 VPEKINFAEEEERILALWTELDAFQESLKQSKSRPQYTFYDGPPFATGLPHYGHILAGTIKDVVTRFAHQSGFHVDRRFGWDCHGLPVEYEIDKMLNIKGPEDVAKMGIVEYNNQCRNIVMRYAKEWETTVIRLGRWIDFKNDYKTLYPSFMETVWWVFRQLFDKGFVYSGVKVMPYSTACTTPLSNFEANQNYK 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16222.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812UNE2_SYMMI5.820e-11978.68Isoleucine--tRNA ligase (Fragment) n=1 Tax=Symbiod... [more]
A0A7S1XPX7_9STRA1.900e-11176.80Isoleucine--tRNA ligase n=1 Tax=Phaeomonas parva T... [more]
A0A7S3GN89_9STRA1.900e-11080.41Isoleucine--tRNA ligase (Fragment) n=1 Tax=Spumell... [more]
A0A7S1U228_9STRA6.670e-11076.80Isoleucine--tRNA ligase (Fragment) n=1 Tax=Phaeomo... [more]
A0A7S3ZMQ5_9STRA2.110e-10877.72Isoleucine--tRNA ligase n=2 Tax=Pelagomonas calceo... [more]
A0A8J4AW17_9CHLO6.100e-10876.04Isoleucine--tRNA ligase n=1 Tax=Volvox africanus T... [more]
F0YNH0_AURAN1.590e-10678.76Isoleucine--tRNA ligase n=1 Tax=Aureococcus anopha... [more]
UPI0009A2F1EE1.970e-10671.21isoleucine--tRNA ligase, cytoplasmic-like n=1 Tax=... [more]
A0A7S1L9U1_NEODS4.030e-10671.79Isoleucine--tRNA ligase (Fragment) n=1 Tax=Neobodo... [more]
S4R5V3_PETMA5.970e-10671.28tRNA-synt_1 domain-containing protein n=2 Tax=Petr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16222contigP-wetherbeei_contig16222:187..1293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009041958.1
Preferred nameILERS
PFAMsAnticodon_1,tRNA-synt_1
Model size645
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01870
KEGG ReactionR03656
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0019899,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046686,GO:0050896,GO:0051020,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Exons3
Evalue2.6e-107
EggNOG OGsCOG0060@1|root,KOG0434@2759|Eukaryota
EC6.1.1.5
DescriptionBelongs to the class-I aminoacyl-tRNA synthetase family
Cds size645
COG categoryJ
BiGG ReactioniRC1080.CRv4_Au5_s16_g6096_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.484992-CDS-P-wetherbeei_contig16222:186..3421683186080.484992-CDS-P-wetherbeei_contig16222:186..342Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16222 187..342 -
1683186080.4941378-CDS-P-wetherbeei_contig16222:655..7871683186080.4941378-CDS-P-wetherbeei_contig16222:655..787Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16222 656..787 -
1683186080.5018713-CDS-P-wetherbeei_contig16222:936..12931683186080.5018713-CDS-P-wetherbeei_contig16222:936..1293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16222 937..1293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16222.1.1prot_P-wetherbeei_contig16222.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16222 187..1293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16222.1.1

>prot_P-wetherbeei_contig16222.1.1 ID=prot_P-wetherbeei_contig16222.1.1|Name=mRNA_P-wetherbeei_contig16222.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=215bp
MADDPAAGGASGDLLDVEQKVSFPEEERKVLQYWDKIEAFKMSLKLSEGR
PEYTFYDGPPFATGLPHFGHILAGTIKDAVTRYAHQTGHHVERRFGWDCH
GLPVEYEIDQALNIKGRHQVLEMGIGTYNNHCRGIVQRYTSEWEKTVKRL
GRWIDFDNDYKTMDPEFMESVWWVFKTLHGKGLVYRGVKVMPYSTKCATP
LSNFEAGQNYKDVR*
back to top

mRNA from alignment at P-wetherbeei_contig16222:187..1293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16222.1.1 ID=mRNA_P-wetherbeei_contig16222.1.1|Name=mRNA_P-wetherbeei_contig16222.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1107bp|location=Sequence derived from alignment at P-wetherbeei_contig16222:187..1293- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGACGACCCTGCCGCCGGCGGCGCCAGCGGAGACCTCCTGGACGT
CGAGCAGAAGGTCTCGTTTCCCGAGGAAGAGCGAAAGGTCTTGCAATACT
GGGACAAGATCGAGGCGTTCAAGATGTCCTTGAAGCTCAGCGAAGGCAGA
CCCGAGTATACGTTCTACGACGGGCCGCCATTCGCGACGGGATTGCCCCA
CTTTGGCCACATTCTCGCGGGCACCATAAAGGACGCCGTCACTCGGTATG
CGCACCAGACGGGGCACCACGTGGAACGGCGGTTCGGCTGGGATTGCCAC
GGCTTGCCTGTCGAGTATGAGATCGACCAGGCGCTGAACATCAAGGGCCG
CCACCAGGTGCGAAGCAACATGATGCGCATGACATCGGGAAGACAGCAAG
AAATTCCATTTTTGCAACTTTTTTTATATCGCTTTCACGCGTTAAAGTCT
CACCTCTTTCCATGCTTCACGAAGCGTCTTTGGTTCCGCGCTCCTTGCGA
CCACAGGTCTTGGAGATGGGCATCGGCACCTACAACAACCACTGCCGGGG
CATCGTCCAGCGCTACACGTCCGAGTGGGAGAAGACGGTCAAGCGGCTTG
GGCGGTGGATCGACTTCGACAACGACTACAAGACCATGGTGGGTGCTGTG
GACGCTGCTGACCTTTGTCTTTGTAATAGGACGAAATTGCAGTTTGGCTG
CTGTTTATCTCGTCGTTCCTCGTCCATGCATGATTTCTGGATGGAGCAGC
TTCGTGCGAAAAGCTCGATAGGTTGACGGGAGTCGAGCGCGTACTAATTA
ATAGCTTTGTCATCGATACAGTGACTGTTCAGCAACCGCTGACTGTTGGA
TGCCGCTGACTCTTGCTCGTTCGTTGGCTCGCCGCCTTCTTCCGGCCTGC
TTGACCTGCGTCTCTTTTCTGGCGGCTTCGCGCTTCTCGCCACGTGAGCA
GGACCCGGAGTTCATGGAGTCGGTGTGGTGGGTGTTCAAGACGCTGCACG
GCAAAGGGCTCGTGTACCGCGGCGTCAAGGTCATGCCCTACTCGACCAAG
TGCGCCACGCCCCTCAGCAACTTCGAGGCCGGCCAGAACTACAAGGACGT
CCGGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16222:187..1293-

>mRNA_P-wetherbeei_contig16222.1.1 ID=mRNA_P-wetherbeei_contig16222.1.1|Name=mRNA_P-wetherbeei_contig16222.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig16222:187..1293- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGACGACCCTGCCGCCGGCGGCGCCAGCGGAGACCTCCTGGACGT
CGAGCAGAAGGTCTCGTTTCCCGAGGAAGAGCGAAAGGTCTTGCAATACT
GGGACAAGATCGAGGCGTTCAAGATGTCCTTGAAGCTCAGCGAAGGCAGA
CCCGAGTATACGTTCTACGACGGGCCGCCATTCGCGACGGGATTGCCCCA
CTTTGGCCACATTCTCGCGGGCACCATAAAGGACGCCGTCACTCGGTATG
CGCACCAGACGGGGCACCACGTGGAACGGCGGTTCGGCTGGGATTGCCAC
GGCTTGCCTGTCGAGTATGAGATCGACCAGGCGCTGAACATCAAGGGCCG
CCACCAGGTCTTGGAGATGGGCATCGGCACCTACAACAACCACTGCCGGG
GCATCGTCCAGCGCTACACGTCCGAGTGGGAGAAGACGGTCAAGCGGCTT
GGGCGGTGGATCGACTTCGACAACGACTACAAGACCATGGACCCGGAGTT
CATGGAGTCGGTGTGGTGGGTGTTCAAGACGCTGCACGGCAAAGGGCTCG
TGTACCGCGGCGTCAAGGTCATGCCCTACTCGACCAAGTGCGCCACGCCC
CTCAGCAACTTCGAGGCCGGCCAGAACTACAAGGACGTCCGGTGA
back to top