mRNA_P-wetherbeei_contig16211.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16211.2.1
Unique NamemRNA_P-wetherbeei_contig16211.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16211.2.1 vs. uniprot
Match: A0A3D5KNH8_9BACT (tRNA-dihydrouridine synthase n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D5KNH8_9BACT)

HSP 1 Score: 554 bits (1427), Expect = 1.300e-197
Identity = 259/322 (80.43%), Postives = 293/322 (90.99%), Query Frame = 1
Query:    1 IGNIELGNFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFGSDVESMRQSTEIASAVNPNLIDINYGCPVKQVACRGAGAALLQDIPMMVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVGIQALTVHGRTRAQMYKGSADWTLIGRIKENPRVHIPIFGNGDMDSPEKVVEYKNRYGVDGVMIGRASIGYPWIFNEIKHFMQYGEKLAAPDIAERVSVTKKHLDFSIRWKGEKVGVLEMRRHYTNYFKGLPDFKPYRTRLVETMSPAELFTILDEISETFT 966
            IGNIELGNFPLLLAPMEDVSDPPFRAVCKE GADLMYTEFISSEGLIR AAKS+QKLDIFEYERPIGIQLFG D+ +M +S  IA+ VNP+LIDINYGCPVK VACRGAGAALLQDIP MVKMTE VVKATHLPVTVKTRLGWD+ TKNI+EVAERLQD+GI+ALTVHGRTR QMYKG A+W LI ++KENPR+HIP+FGNGD+DSPEK ++YKNRYGVDGVMIGRASIGYPWIF EIKHF++ GEKLAAP I+ERV+ T+KHLDFSIRWKG+K+G+ EMRRHY+NYFKGLPDFKPYRTRLVE +   E+++IL E+ E ++
Sbjct:    4 IGNIELGNFPLLLAPMEDVSDPPFRAVCKEGGADLMYTEFISSEGLIRHAAKSKQKLDIFEYERPIGIQLFGGDIGNMAESARIATEVNPDLIDINYGCPVKAVACRGAGAALLQDIPKMVKMTEEVVKATHLPVTVKTRLGWDEQTKNIVEVAERLQDIGIKALTVHGRTRVQMYKGEANWELIAKVKENPRMHIPVFGNGDIDSPEKAIDYKNRYGVDGVMIGRASIGYPWIFREIKHFLKTGEKLAAPTISERVAATRKHLDFSIRWKGDKLGIFEMRRHYSNYFKGLPDFKPYRTRLVEALHHEEIYSILTEVDENYS 325          
BLAST of mRNA_P-wetherbeei_contig16211.2.1 vs. uniprot
Match: A0A7L9BFP8_9BACT (tRNA-dihydrouridine synthase n=1 Tax=Flammeovirgaceae bacterium TaxID=2026740 RepID=A0A7L9BFP8_9BACT)

HSP 1 Score: 551 bits (1421), Expect = 1.230e-196
Identity = 261/321 (81.31%), Postives = 292/321 (90.97%), Query Frame = 1
Query:    1 IGNIELGNFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFGSDVESMRQSTEIASAVNPNLIDINYGCPVKQVACRGAGAALLQDIPMMVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVGIQALTVHGRTRAQMYKGSADWTLIGRIKENPRVHIPIFGNGDMDSPEKVVEYKNRYGVDGVMIGRASIGYPWIFNEIKHFMQYGEKLAAPDIAERVSVTKKHLDFSIRWKGEKVGVLEMRRHYTNYFKGLPDFKPYRTRLVETMSPAELFTILDEISETF 963
            IG+IE G FPLLLAPMEDVSDPPFRAVCK NGADLMYTEFISSEGLIRDAAKS+QKLD+FEYER IGIQLFGS++E M QS EIA+  NP+LIDINYGCPVK VACRGAGAALLQD+P MV+MTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVG+QALTVHGRTR QMYKG ADWTLIG++KENPR+ IPIFGNGD+DSP+K +EYKNRYGVDG+MIGRA+IGYPWIFNEIKH++ +GE L +PD+AERVSV + HL+FSIRWKG++ GV EMRRHYTNYFKG+P+FK YRTRLV  +S  ELF+ILDEI E F
Sbjct:    4 IGSIEAGEFPLLLAPMEDVSDPPFRAVCKANGADLMYTEFISSEGLIRDAAKSKQKLDVFEYERLIGIQLFGSNIEHMVQSAEIATTANPDLIDINYGCPVKNVACRGAGAALLQDVPKMVRMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVGVQALTVHGRTRVQMYKGQADWTLIGKLKENPRLTIPIFGNGDIDSPQKALEYKNRYGVDGLMIGRAAIGYPWIFNEIKHYLAHGEVLPSPDVAERVSVVRSHLEFSIRWKGQRTGVFEMRRHYTNYFKGIPEFKLYRTRLVNAVSVEELFSILDEIVEVF 324          
BLAST of mRNA_P-wetherbeei_contig16211.2.1 vs. uniprot
Match: A0A3P1CK58_9BACT (tRNA-dihydrouridine synthase n=5 Tax=Larkinella TaxID=332157 RepID=A0A3P1CK58_9BACT)

HSP 1 Score: 550 bits (1416), Expect = 6.620e-196
Identity = 261/326 (80.06%), Postives = 292/326 (89.57%), Query Frame = 1
Query:    1 IGNIELGNFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFGSDVESMRQSTEIASAVNPNLIDINYGCPVKQVACRGAGAALLQDIPMMVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVGIQALTVHGRTRAQMYKGSADWTLIGRIKENPRVHIPIFGNGDMDSPEKVVEYKNRYGVDGVMIGRASIGYPWIFNEIKHFMQYGEKLAAPDIAERVSVTKKHLDFSIRWKGEKVGVLEMRRHYTNYFKGLPDFKPYRTRLVETMSPAELFTILDEISETFTDKFV 978
            IG IELG FPLLLAPMEDVSDPPFRAVCK NGADLMYTEFISSEGLIRDAAKS +KLDIFEYERPIGIQLFGSD+E+M+  +EIA+  NP+LIDINYGCPVK VACRGAGAALLQDIP MVKMTEAVVKATHLPVTVKTRLGWDDNT+NILEVAERLQD+GIQALTVHGRTR QMYKG ADWTLIGR+KENPR+ IPIFGNGD+DSPEK + YKNRYGVDG+MIGRASIGYPW+FNEIKHF++ GE LA P +A+RV+V K+HLDFSIRWKGEK G+ EMRRHYTNYFKGL +FKP+R RLV+  +  E+  IL+EISE +  + +
Sbjct:    4 IGTIELGEFPLLLAPMEDVSDPPFRAVCKANGADLMYTEFISSEGLIRDAAKSVRKLDIFEYERPIGIQLFGSDIETMQACSEIATRANPDLIDINYGCPVKNVACRGAGAALLQDIPKMVKMTEAVVKATHLPVTVKTRLGWDDNTRNILEVAERLQDIGIQALTVHGRTRVQMYKGEADWTLIGRVKENPRIKIPIFGNGDIDSPEKALAYKNRYGVDGIMIGRASIGYPWVFNEIKHFLRTGEHLAPPSLADRVAVCKQHLDFSIRWKGEKTGIFEMRRHYTNYFKGLENFKPFRLRLVQAETAGEIAGILNEISELYEAELI 329          
BLAST of mRNA_P-wetherbeei_contig16211.2.1 vs. uniprot
Match: A0A1T5LBJ0_9BACT (tRNA-dihydrouridine synthase n=1 Tax=Ohtaekwangia koreensis TaxID=688867 RepID=A0A1T5LBJ0_9BACT)

HSP 1 Score: 546 bits (1407), Expect = 1.550e-194
Identity = 258/328 (78.66%), Postives = 290/328 (88.41%), Query Frame = 1
Query:    1 IGNIELGNFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFGSDVESMRQSTEIASAVNPNLIDINYGCPVKQVACRGAGAALLQDIPMMVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVGIQALTVHGRTRAQMYKGSADWTLIGRIKENPRVHIPIFGNGDMDSPEKVVEYKNRYGVDGVMIGRASIGYPWIFNEIKHFMQYGEKLAAPDIAERVSVTKKHLDFSIRWKGEKVGVLEMRRHYTNYFKGLPDFKPYRTRLVETMSPAELFTILDEISETFTDKFVEA 984
            IG IELG FPLLLAPMEDVSDPPFRAVCKE GADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFG D+ +M QS EIA+A  P+LIDINYGCPVK VACRGAGAALLQDIP MVKMTE +VK THLPVTVKTRLGWD++TKNILEVAERLQD+GI+AL++HGRTR QMYKG ADWTLIG++KENPR+HIPIFGNGD+DSPEK +EYKNRYGVDGVMIGRA+IGYPWIF EIKH++++GE+   PD+ ERV  TKKHL+FSIRWKG+K+GV EMRRHYTNYFKG+ DFKP+R RLVE  + AE+  ILDE+  T+    V A
Sbjct:    4 IGQIELGEFPLLLAPMEDVSDPPFRAVCKEGGADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFGGDIGNMVQSAEIATAARPDLIDINYGCPVKAVACRGAGAALLQDIPKMVKMTEEIVKCTHLPVTVKTRLGWDESTKNILEVAERLQDIGIKALSIHGRTRVQMYKGEADWTLIGKVKENPRIHIPIFGNGDIDSPEKALEYKNRYGVDGVMIGRAAIGYPWIFQEIKHYIKHGERPLPPDMNERVRATKKHLEFSIRWKGDKLGVFEMRRHYTNYFKGINDFKPFRMRLVEAPTEAEVLAILDEVVSTYNGTVVAA 331          
BLAST of mRNA_P-wetherbeei_contig16211.2.1 vs. uniprot
Match: A0A840TMT1_9BACT (tRNA-dihydrouridine synthase n=1 Tax=Rhabdobacter roseus TaxID=1655419 RepID=A0A840TMT1_9BACT)

HSP 1 Score: 546 bits (1406), Expect = 2.290e-194
Identity = 262/321 (81.62%), Postives = 287/321 (89.41%), Query Frame = 1
Query:    1 IGNIELGNFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFGSDVESMRQSTEIASAVNPNLIDINYGCPVKQVACRGAGAALLQDIPMMVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVGIQALTVHGRTRAQMYKGSADWTLIGRIKENPRVHIPIFGNGDMDSPEKVVEYKNRYGVDGVMIGRASIGYPWIFNEIKHFMQYGEKLAAPDIAERVSVTKKHLDFSIRWKGEKVGVLEMRRHYTNYFKGLPDFKPYRTRLVETMSPAELFTILDEISETF 963
            IGNIELG FPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKS +KLDIFEYERPIGIQLFGSD+E+MR  TEIA+  +P+LIDINYGCPVK VACRGAGAALLQDIP MV+MTEAVVKATHLPVTVKTRLGWDD TKNILEVAERLQD+GIQALTVHGRTR QMYKG+ADWTLIGRIKENPR  IPIFGNGD+DSP+K + YKNRYGVDG+MIGRASIGYPWIFNE+KH+++ GE L  P +A RV   +KHLDFS+RWKGE  G+LEMRRHYTNYF+GL  FKPYR RLVE++S  EL  IL EISE +
Sbjct:    4 IGNIELGEFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSVRKLDIFEYERPIGIQLFGSDIETMRACTEIATQASPDLIDINYGCPVKNVACRGAGAALLQDIPKMVRMTEAVVKATHLPVTVKTRLGWDDTTKNILEVAERLQDIGIQALTVHGRTRVQMYKGAADWTLIGRIKENPRTTIPIFGNGDIDSPQKALAYKNRYGVDGIMIGRASIGYPWIFNEVKHYLRTGELLTPPTLAARVEACRKHLDFSVRWKGEITGILEMRRHYTNYFRGLNHFKPYRMRLVESLSHEELNGILSEISEAY 324          
BLAST of mRNA_P-wetherbeei_contig16211.2.1 vs. uniprot
Match: UPI000FFC7B9E (tRNA dihydrouridine synthase DusB n=1 Tax=Larkinella soli TaxID=1770527 RepID=UPI000FFC7B9E)

HSP 1 Score: 545 bits (1405), Expect = 2.910e-194
Identity = 260/321 (81.00%), Postives = 290/321 (90.34%), Query Frame = 1
Query:    1 IGNIELGNFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFGSDVESMRQSTEIASAVNPNLIDINYGCPVKQVACRGAGAALLQDIPMMVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVGIQALTVHGRTRAQMYKGSADWTLIGRIKENPRVHIPIFGNGDMDSPEKVVEYKNRYGVDGVMIGRASIGYPWIFNEIKHFMQYGEKLAAPDIAERVSVTKKHLDFSIRWKGEKVGVLEMRRHYTNYFKGLPDFKPYRTRLVETMSPAELFTILDEISETF 963
            IGNIELG FPLLLAPMEDVSDPPFRAVCK NGADLMYTEFISSEGLIRDAAKS QKLDIFEYERPIGIQLFGSDV++M    EIA+ V+P+LIDINYGCPVK VACRGAGAALLQDIP MV+MTEAVVK+THLPVTVKTRLGWDD TKNILEVAERLQD+GIQALT+HGRTR QMYKG ADWTLIGR++ENPR+ IPIFGNGD+DSPEK +EYKNRYGVDG+MIGRASIGYPW+FNEIKH++  GE L AP +A+RV+V K+HL FSIRWKGEK G+ EMRRHYTNYFKGL +FKP+R RLV+  + AEL  ILDEI+E++
Sbjct:    4 IGNIELGGFPLLLAPMEDVSDPPFRAVCKANGADLMYTEFISSEGLIRDAAKSVQKLDIFEYERPIGIQLFGSDVQTMGACAEIATRVSPDLIDINYGCPVKNVACRGAGAALLQDIPKMVRMTEAVVKSTHLPVTVKTRLGWDDATKNILEVAERLQDIGIQALTIHGRTRVQMYKGEADWTLIGRVRENPRIRIPIFGNGDIDSPEKALEYKNRYGVDGIMIGRASIGYPWVFNEIKHYLHTGEHLPAPTLADRVAVCKQHLTFSIRWKGEKTGIFEMRRHYTNYFKGLENFKPFRQRLVQADTFAELSEILDEIAESY 324          
BLAST of mRNA_P-wetherbeei_contig16211.2.1 vs. uniprot
Match: A0A6G9AS83_9BACT (tRNA-dihydrouridine synthase n=4 Tax=Spirosoma TaxID=107 RepID=A0A6G9AS83_9BACT)

HSP 1 Score: 545 bits (1403), Expect = 5.870e-194
Identity = 263/326 (80.67%), Postives = 291/326 (89.26%), Query Frame = 1
Query:    1 IGNIELGNFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFGSDVESMRQSTEIASAVNPNLIDINYGCPVKQVACRGAGAALLQDIPMMVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVGIQALTVHGRTRAQMYKGSADWTLIGRIKENPRVHIPIFGNGDMDSPEKVVEYKNRYGVDGVMIGRASIGYPWIFNEIKHFMQYGEKLAAPDIAERVSVTKKHLDFSIRWKGEKVGVLEMRRHYTNYFKGLPDFKPYRTRLVETMSPAELFTILDEISETFTDKFV 978
            IGNI+L +FPLLLAPMEDVSDPPFRAVCK NGADLMYTEFISSEGLIRDAAKS QKLDIFEYERPIGIQLFGSDVE+M    EIA+  NP+LIDINYGCPVK VACRGAGAALLQDIP MV+MTEAVVKATHLPVTVKTRLGWDDNTKN+ EVAERLQD+GI+ALT+HGRTR QMYKG+ADWTLIGRIK+NPR+ IPIFGNGD+DSPEK +EYKNRYGVDGVMIGRASIG+PWIF+EIKH+ + GE   AP +A+RV+V ++HLDFSIRWKGE VG+ EMRRHY NYFKGLPDFKPYR+RLV T S AEL  ILDEI E +  + V
Sbjct:    4 IGNIQLPDFPLLLAPMEDVSDPPFRAVCKANGADLMYTEFISSEGLIRDAAKSVQKLDIFEYERPIGIQLFGSDVETMGACAEIATRANPDLIDINYGCPVKNVACRGAGAALLQDIPKMVRMTEAVVKATHLPVTVKTRLGWDDNTKNVGEVAERLQDIGIKALTIHGRTRVQMYKGNADWTLIGRIKDNPRIQIPIFGNGDIDSPEKALEYKNRYGVDGVMIGRASIGHPWIFDEIKHYARTGEHRPAPTVADRVAVCRQHLDFSIRWKGEIVGLFEMRRHYANYFKGLPDFKPYRSRLVTTDSYAELGAILDEIQENYIPELV 329          
BLAST of mRNA_P-wetherbeei_contig16211.2.1 vs. uniprot
Match: A0A3P1BIQ1_9BACT (tRNA-dihydrouridine synthase n=2 Tax=Larkinella TaxID=332157 RepID=A0A3P1BIQ1_9BACT)

HSP 1 Score: 545 bits (1403), Expect = 5.870e-194
Identity = 261/321 (81.31%), Postives = 289/321 (90.03%), Query Frame = 1
Query:    1 IGNIELGNFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFGSDVESMRQSTEIASAVNPNLIDINYGCPVKQVACRGAGAALLQDIPMMVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVGIQALTVHGRTRAQMYKGSADWTLIGRIKENPRVHIPIFGNGDMDSPEKVVEYKNRYGVDGVMIGRASIGYPWIFNEIKHFMQYGEKLAAPDIAERVSVTKKHLDFSIRWKGEKVGVLEMRRHYTNYFKGLPDFKPYRTRLVETMSPAELFTILDEISETF 963
            IG IELG+FPLLLAPMEDVSDPPFRAVCK NGADLMYTEFISSEGLIRDAAKS QKLDIFEYERPIGIQLFGSD+E+MR   EIA+  NP+LIDINYGCPVK VACRGAGAALLQD+P MVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQD+GIQALTVHGRTR QMYKG ADWTLIGR+KENPR  IPIFGNGD+DSPEK  EYKNRYGVDG+MIGRASIGYPWIF+EIKHF++ GE  +AP +A+R++V K+HL+FSIRWKGEKVG+ EMRRHYTNYFKG+ +FKP+R RLV   + AE+  ILDEI + +
Sbjct:    4 IGTIELGDFPLLLAPMEDVSDPPFRAVCKANGADLMYTEFISSEGLIRDAAKSVQKLDIFEYERPIGIQLFGSDIETMRVCAEIATRANPDLIDINYGCPVKNVACRGAGAALLQDVPKMVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDIGIQALTVHGRTRVQMYKGEADWTLIGRLKENPRTTIPIFGNGDIDSPEKAREYKNRYGVDGIMIGRASIGYPWIFDEIKHFLRTGEHRSAPTLADRIAVCKQHLEFSIRWKGEKVGIFEMRRHYTNYFKGMENFKPFRQRLVLADTLAEIAGILDEICDAY 324          
BLAST of mRNA_P-wetherbeei_contig16211.2.1 vs. uniprot
Match: A0A7J5TYB6_9BACT (tRNA-dihydrouridine synthase n=3 Tax=Cytophagales TaxID=768507 RepID=A0A7J5TYB6_9BACT)

HSP 1 Score: 544 bits (1402), Expect = 8.650e-194
Identity = 260/326 (79.75%), Postives = 291/326 (89.26%), Query Frame = 1
Query:    1 IGNIELGNFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFGSDVESMRQSTEIASAVNPNLIDINYGCPVKQVACRGAGAALLQDIPMMVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVGIQALTVHGRTRAQMYKGSADWTLIGRIKENPRVHIPIFGNGDMDSPEKVVEYKNRYGVDGVMIGRASIGYPWIFNEIKHFMQYGEKLAAPDIAERVSVTKKHLDFSIRWKGEKVGVLEMRRHYTNYFKGLPDFKPYRTRLVETMSPAELFTILDEISETFTDKFV 978
            I NIELG FPLLLAPMEDVSDPPFRAVCK NGADLMYTEFISSEGLIRDAAKS QKLDIFEYERP+GIQLFGSDVE+M +   IAS VNP+LIDINYGCPVK VACRGAGAALLQDIP MV+MTEAVVKATHLPVTVKTRLGWDD+TKNI EVAERLQD+GI+ALTVHGRTR QMYKG ADWTLIG+IKENPR+ IPIFGNGD+DSPEK +EY+NRYGVDG+MIGRASIGYPWIFNEIKHF++ GE L  P +A+RV+V ++HLDFSIRWKGEKVG+ EMRRHYT+YFKGL +FKP+R+RLV   S  EL +IL+E+ E +  + V
Sbjct:    4 IANIELGEFPLLLAPMEDVSDPPFRAVCKANGADLMYTEFISSEGLIRDAAKSVQKLDIFEYERPVGIQLFGSDVETMGECARIASRVNPDLIDINYGCPVKNVACRGAGAALLQDIPKMVRMTEAVVKATHLPVTVKTRLGWDDSTKNIQEVAERLQDIGIKALTVHGRTRVQMYKGDADWTLIGKIKENPRIQIPIFGNGDIDSPEKALEYRNRYGVDGIMIGRASIGYPWIFNEIKHFLKTGEHLPVPTVADRVAVCRQHLDFSIRWKGEKVGIFEMRRHYTSYFKGLENFKPFRSRLVVAESHDELLSILNEVQEHYLGELV 329          
BLAST of mRNA_P-wetherbeei_contig16211.2.1 vs. uniprot
Match: UPI001A963BA4 (tRNA dihydrouridine synthase DusB n=2 Tax=Telluribacter TaxID=1949218 RepID=UPI001A963BA4)

HSP 1 Score: 544 bits (1401), Expect = 1.320e-193
Identity = 260/322 (80.75%), Postives = 289/322 (89.75%), Query Frame = 1
Query:    1 IGNIELGNFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQLFGSDVESMRQSTEIASAVNPNLIDINYGCPVKQVACRGAGAALLQDIPMMVKMTEAVVKATHLPVTVKTRLGWDDNTKNILEVAERLQDVGIQALTVHGRTRAQMYKGSADWTLIGRIKENPRVHIPIFGNGDMDSPEKVVEYKNRYGVDGVMIGRASIGYPWIFNEIKHFMQYGEKLAAPDIAERVSVTKKHLDFSIRWKGEKVGVLEMRRHYTNYFKGLPDFKPYRTRLVETMSPAELFTILDEISETFT 966
            IG IELG FPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKS QKLDIFEYERPIGIQLFGSD+E+MR   EIA+  NP+LIDINYGCPVK VAC+GAGAALLQDIP MVKMTEAVVKATHLPVTVKTRLGWD++TKNI EVAERLQD+GIQALTVHGRTR QMYKGSADWTLI RIKEN R+ IPIFGNGD+D+PEK +EY+NR+GVDG+MIGRASIGYPWIFNEIKH+ + GE +A P +A+RV   +KHL+FS+RWKGE  G+LEMRRHYTNYFKGL  FKPYR RLVE++S  EL +ILDEIS+ F+
Sbjct:    4 IGQIELGEFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSVQKLDIFEYERPIGIQLFGSDIETMRSCAEIATRANPDLIDINYGCPVKNVACKGAGAALLQDIPKMVKMTEAVVKATHLPVTVKTRLGWDESTKNIEEVAERLQDIGIQALTVHGRTRVQMYKGSADWTLIARIKENSRIQIPIFGNGDIDTPEKALEYRNRFGVDGIMIGRASIGYPWIFNEIKHYFRTGEMMAPPTLAQRVEACRKHLEFSVRWKGEITGILEMRRHYTNYFKGLNHFKPYRMRLVESLSYPELNSILDEISDVFS 325          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16211.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5KNH8_9BACT1.300e-19780.43tRNA-dihydrouridine synthase n=1 Tax=Cytophagales ... [more]
A0A7L9BFP8_9BACT1.230e-19681.31tRNA-dihydrouridine synthase n=1 Tax=Flammeovirgac... [more]
A0A3P1CK58_9BACT6.620e-19680.06tRNA-dihydrouridine synthase n=5 Tax=Larkinella Ta... [more]
A0A1T5LBJ0_9BACT1.550e-19478.66tRNA-dihydrouridine synthase n=1 Tax=Ohtaekwangia ... [more]
A0A840TMT1_9BACT2.290e-19481.62tRNA-dihydrouridine synthase n=1 Tax=Rhabdobacter ... [more]
UPI000FFC7B9E2.910e-19481.00tRNA dihydrouridine synthase DusB n=1 Tax=Larkinel... [more]
A0A6G9AS83_9BACT5.870e-19480.67tRNA-dihydrouridine synthase n=4 Tax=Spirosoma Tax... [more]
A0A3P1BIQ1_9BACT5.870e-19481.31tRNA-dihydrouridine synthase n=2 Tax=Larkinella Ta... [more]
A0A7J5TYB6_9BACT8.650e-19479.75tRNA-dihydrouridine synthase n=3 Tax=Cytophagales ... [more]
UPI001A963BA41.320e-19380.75tRNA dihydrouridine synthase DusB n=2 Tax=Tellurib... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16211contigP-wetherbeei_contig16211:552..1538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1089547.KB913013_gene213
Preferred namedus
PFAMsDus
Model size987
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.41e-195
EggNOG OGsCOG0042@1|root,COG0042@2|Bacteria,4NEN4@976|Bacteroidetes,47JGV@768503|Cytophagia
DescriptionCatalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Cds size987
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186080.2304711-CDS-P-wetherbeei_contig16211:551..15381683186080.2304711-CDS-P-wetherbeei_contig16211:551..1538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16211 552..1538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16211.2.1prot_P-wetherbeei_contig16211.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16211 552..1538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16211.2.1

>prot_P-wetherbeei_contig16211.2.1 ID=prot_P-wetherbeei_contig16211.2.1|Name=mRNA_P-wetherbeei_contig16211.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=329bp
IGNIELGNFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDA
AKSRQKLDIFEYERPIGIQLFGSDVESMRQSTEIASAVNPNLIDINYGCP
VKQVACRGAGAALLQDIPMMVKMTEAVVKATHLPVTVKTRLGWDDNTKNI
LEVAERLQDVGIQALTVHGRTRAQMYKGSADWTLIGRIKENPRVHIPIFG
NGDMDSPEKVVEYKNRYGVDGVMIGRASIGYPWIFNEIKHFMQYGEKLAA
PDIAERVSVTKKHLDFSIRWKGEKVGVLEMRRHYTNYFKGLPDFKPYRTR
LVETMSPAELFTILDEISETFTDKFVEA*
back to top

mRNA from alignment at P-wetherbeei_contig16211:552..1538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16211.2.1 ID=mRNA_P-wetherbeei_contig16211.2.1|Name=mRNA_P-wetherbeei_contig16211.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=987bp|location=Sequence derived from alignment at P-wetherbeei_contig16211:552..1538- (Phaeothamnion wetherbeei SAG_119_79)
ATCGGAAACATAGAATTGGGCAATTTCCCGCTGCTGCTCGCACCGATGGA GGATGTGAGTGATCCGCCTTTCCGAGCTGTGTGCAAGGAAAACGGAGCCG ATCTCATGTACACCGAGTTCATTTCATCCGAAGGCCTTATTCGCGATGCA GCCAAGAGTCGACAAAAGCTTGATATTTTTGAATATGAACGTCCGATTGG CATCCAGCTTTTTGGAAGTGATGTTGAAAGCATGCGTCAATCAACGGAAA TCGCATCAGCTGTAAATCCAAACCTGATTGACATTAACTATGGCTGTCCG GTAAAACAGGTTGCGTGTCGCGGAGCGGGAGCTGCACTTTTACAAGACAT ACCCATGATGGTGAAGATGACCGAAGCCGTTGTGAAAGCGACTCATCTTC CGGTTACGGTTAAGACCCGTTTAGGCTGGGATGATAACACGAAAAATATT CTTGAAGTAGCAGAACGTTTACAGGATGTTGGAATCCAGGCATTGACGGT GCATGGAAGAACCCGTGCTCAGATGTACAAAGGTTCAGCGGATTGGACAT TGATCGGAAGAATAAAAGAAAATCCACGCGTTCACATCCCGATCTTTGGT AATGGTGATATGGATTCGCCTGAAAAGGTTGTTGAATATAAGAATCGTTA TGGTGTTGATGGCGTAATGATCGGTCGTGCATCAATCGGTTATCCCTGGA TCTTTAACGAGATCAAACATTTCATGCAGTATGGCGAAAAGCTTGCAGCA CCCGATATAGCAGAACGTGTCAGTGTAACTAAAAAGCATCTCGATTTTTC CATTCGGTGGAAAGGTGAGAAAGTCGGTGTTTTGGAAATGAGACGACACT ACACGAATTACTTCAAAGGCCTTCCGGATTTTAAGCCTTACCGAACTCGT TTGGTAGAAACGATGAGTCCGGCAGAGCTGTTTACTATCCTGGATGAGAT TAGCGAAACATTTACCGATAAGTTTGTTGAGGCGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16211:552..1538-

>mRNA_P-wetherbeei_contig16211.2.1 ID=mRNA_P-wetherbeei_contig16211.2.1|Name=mRNA_P-wetherbeei_contig16211.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=987bp|location=Sequence derived from alignment at P-wetherbeei_contig16211:552..1538- (Phaeothamnion wetherbeei SAG_119_79)
ATCGGAAACATAGAATTGGGCAATTTCCCGCTGCTGCTCGCACCGATGGA
GGATGTGAGTGATCCGCCTTTCCGAGCTGTGTGCAAGGAAAACGGAGCCG
ATCTCATGTACACCGAGTTCATTTCATCCGAAGGCCTTATTCGCGATGCA
GCCAAGAGTCGACAAAAGCTTGATATTTTTGAATATGAACGTCCGATTGG
CATCCAGCTTTTTGGAAGTGATGTTGAAAGCATGCGTCAATCAACGGAAA
TCGCATCAGCTGTAAATCCAAACCTGATTGACATTAACTATGGCTGTCCG
GTAAAACAGGTTGCGTGTCGCGGAGCGGGAGCTGCACTTTTACAAGACAT
ACCCATGATGGTGAAGATGACCGAAGCCGTTGTGAAAGCGACTCATCTTC
CGGTTACGGTTAAGACCCGTTTAGGCTGGGATGATAACACGAAAAATATT
CTTGAAGTAGCAGAACGTTTACAGGATGTTGGAATCCAGGCATTGACGGT
GCATGGAAGAACCCGTGCTCAGATGTACAAAGGTTCAGCGGATTGGACAT
TGATCGGAAGAATAAAAGAAAATCCACGCGTTCACATCCCGATCTTTGGT
AATGGTGATATGGATTCGCCTGAAAAGGTTGTTGAATATAAGAATCGTTA
TGGTGTTGATGGCGTAATGATCGGTCGTGCATCAATCGGTTATCCCTGGA
TCTTTAACGAGATCAAACATTTCATGCAGTATGGCGAAAAGCTTGCAGCA
CCCGATATAGCAGAACGTGTCAGTGTAACTAAAAAGCATCTCGATTTTTC
CATTCGGTGGAAAGGTGAGAAAGTCGGTGTTTTGGAAATGAGACGACACT
ACACGAATTACTTCAAAGGCCTTCCGGATTTTAAGCCTTACCGAACTCGT
TTGGTAGAAACGATGAGTCCGGCAGAGCTGTTTACTATCCTGGATGAGAT
TAGCGAAACATTTACCGATAAGTTTGTTGAGGCGTAG
back to top