mRNA_P-wetherbeei_contig162.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig162.4.1
Unique NamemRNA_P-wetherbeei_contig162.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig162.4.1 vs. uniprot
Match: A0A6H5JCK4_9PHAE (Telo_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK4_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.480e-28
Identity = 134/413 (32.45%), Postives = 185/413 (44.79%), Query Frame = 1 
Query:   16 GTGRRMPSHYTYSALADLPGIIARQQQQQGQVQANRPVAVYLYGVVCSFGHRHQTAGDKLV-SVNLIDETVPDPADSVNTNLFSSRWGDLPQVAMVGDILRFHRADLTVRATPFGPRPQLVARVQARSAWVLLRRRRLKAAVYQTGPEGXXXXXXXXXXXXXV-------------GTAAAGGHATSFDPR-EWEVLHNHGSMTIEANDVERARRLSDWFLGALPTIRFNNPGASKT-LSAVFAPPSPAAAAAAQENRLTQMDEYADVVGVLTGLEESTEGGQSAVSRFTVWDGTVPPVTLPTSEVDAAVDAA----IRAA---------GHLPPPLMPRAVRPSLLNVRVAAHGVPLLDLGLRMGLWVRLRRLQVRKNLVTRTLDAS-VGFTTAVNLLPPTTAEVHACVLAY 1164
            G G R  + Y Y+AL  +     R Q+++  V          YGVVCSF HRHQ+ G  L  SV+L+DE+ P    +V  N FSS    LP   MVGDI+R HRA    +   +  RPQL+A   A  AW+++R+++     YQ  P G       XXXXXX              G  A GG   +  P  +WEV  +  + T+   D +R   LSDW     P +   +    K  +  +F  P        Q   +    E  D+V  LT   E  EGG  ++S   V DGT    ++P  E D   DAA    +RAA            PPP+      P+ L V V  +      L L  G+W+RLRRL + KN  T  + A  +   ++VN L P+  EV    ++Y
Sbjct:  203 GGGGRAKASYAYTALDSI-----RVQEEKTNV----------YGVVCSFTHRHQSRGRDLTNSVSLLDESCPQSDGAVPCNFFSSTLKGLPAPLMVGDIVRLHRA----KVQEYRGRPQLLAAGGA--AWLVIRKKKAMRETYQKCPIGGISSASGXXXXXXXXXXXXXXXXSPPSGPDAGGGEVDAILPATDWEVQSSSANYTLSQVDQDRCIALSDWLARKSPQLWLKSSSEVKVWVQDIFRRP--------QSGDVISKLEV-DLVCCLTSKHEKAEGGAGSLSEVYVADGTGFASSMPGKEWDDRRDAALLKGVRAALGKPGWSPGNPRPPPI------PAHLKVEVTENKREWEALALSPGMWIRLRRLTIVKNRATGNMSAKMIDKGSSVNPLHPSMVEVQHIAMSY 579
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BLAST of mRNA_P-wetherbeei_contig162.4.1 vs. uniprot
Match: D7FIQ5_ECTSI (POT1 protection of telomeres 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ5_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 7.400e-21
Identity = 103/314 (32.80%), Postives = 141/314 (44.90%), Query Frame = 1 
Query:   16 GTGRRMPSHYTYSALADLPGIIARQQQQQGQVQANRPVAVYLYGVVCSFGHRHQTAGDKLV-SVNLIDETVPDPADSVNTNLFSSRWGDLPQVAMVGDILRFHRADLTVRATPFGPRPQLVARVQARSAWVLLRRRRLKAAVYQTGPEGXXXXXXXXXXXXXV-------------GTAAAGGHATSFDPR-EWEVLHNHGSMTIEANDVERARRLSDWFLGALPTIRFNNPGASKT-LSAVFAPPSPAAAAAAQENRLTQMDEYADVVGVLTGLEESTEGGQSAVSRFTVWDGTVPPVTLPTSEVDAAVDAAI 909
            G   R  + Y Y+ L  +     R Q+++  V          YGVVCSF HRHQ+ G  L  SV+L+DE+ P   D+V  N FSS    LP   MVGDI+R HRA    +   +  RPQL+A   A  AW+++R+++     YQ  P G        XXXXX              G  A GG A +  P  +WEV  +  + T+   D +R   LSDW     P +   +    K  +  +F  P        Q   +    E  D+V  LT   E  EGG  ++S   V DGT    ++P  E D   DAA+
Sbjct:  218 GXXXRAKASYAYTTLDSI-----RVQEEKTNV----------YGVVCSFTHRHQSRGRDLTNSVSLLDESCPQSDDAVPCNFFSSTLKGLPAPLMVGDIVRLHRA----KVQEYRGRPQLLAAGGA--AWLVIRKKKAMRETYQKCPIGGISPASGDXXXXXXXXXXXXXXXSPPSGPDAGGGEADAVLPATDWEVQSSSANYTLSQVDQDRCIALSDWLATKSPHLWLKSSSEVKVWVQDIFRRP--------QSGDVISKLEV-DLVCCLTSKHEKAEGGAGSLSEVYVADGTGFASSMPGKEWDDRRDAAL 501
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig162.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCK4_9PHAE3.480e-2832.45Telo_bind domain-containing protein n=1 Tax=Ectoca... [more]
D7FIQ5_ECTSI7.400e-2132.80POT1 protection of telomeres 1 homolog n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig162contigP-wetherbeei_contig162:3127..5224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIQ5
Preferred namePOT1
PFAMsPOT1,POT1PC
Model size2098
Max annot lvl2759|Eukaryota
KEGG koko:K10406,ko:K11109,ko:K22128
KEGG TC1.A.75.1
KEGG ModuleM00424
Hectar predicted targeting categoryother localisation
GOsGO:0000217,GO:0000228,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003723,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005724,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010521,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0010833,GO:0016043,GO:0016233,GO:0017151,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031933,GO:0031974,GO:0031981,GO:0032200,GO:0032202,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032211,GO:0032212,GO:0032356,GO:0032357,GO:0032392,GO:0032508,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042162,GO:0042592,GO:0043047,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045184,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051095,GO:0051096,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051348,GO:0051641,GO:0051972,GO:0051973,GO:0051974,GO:0060249,GO:0060255,GO:0060382,GO:0060383,GO:0061820,GO:0061821,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072594,GO:0080090,GO:0090304,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098772,GO:0098847,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1904356,GO:1904357,GO:1904358,GO:1905462,GO:1905464,GO:1905773,GO:1905774,GO:1905776,GO:1990955,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000573,GO:2001251,GO:2001252
Exons1
Evalue1.42e-21
EggNOG OGsKOG4757@1|root,KOG4757@2759|Eukaryota
Ec32 ortholog descriptionPOT1 protection of telomeres 1 homolog
Ec32 orthologEc-27_000660.1
Descriptionpositive regulation of DNA strand elongation
Cds size1824
COG categoryS
BRITEko00000,ko00002,ko02000,ko03032,ko04131,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186079.815045-UTR-P-wetherbeei_contig162:3126..31561683186079.815045-UTR-P-wetherbeei_contig162:3126..3156Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig162 3127..3156 +
1683186079.8431664-UTR-P-wetherbeei_contig162:4980..52241683186079.8431664-UTR-P-wetherbeei_contig162:4980..5224Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig162 4981..5224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186079.826235-CDS-P-wetherbeei_contig162:3156..49801683186079.826235-CDS-P-wetherbeei_contig162:3156..4980Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig162 3157..4980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig162.4.1prot_P-wetherbeei_contig162.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig162 3157..4980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig162.4.1

>prot_P-wetherbeei_contig162.4.1 ID=prot_P-wetherbeei_contig162.4.1|Name=mRNA_P-wetherbeei_contig162.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=608bp
MPSHYTYSALADLPGIIARQQQQQGQVQANRPVAVYLYGVVCSFGHRHQT
AGDKLVSVNLIDETVPDPADSVNTNLFSSRWGDLPQVAMVGDILRFHRAD
LTVRATPFGPRPQLVARVQARSAWVLLRRRRLKAAVYQTGPEGGGSNGAA
VLAGGGVGTAAAGGHATSFDPREWEVLHNHGSMTIEANDVERARRLSDWF
LGALPTIRFNNPGASKTLSAVFAPPSPAAAAAAQENRLTQMDEYADVVGV
LTGLEESTEGGQSAVSRFTVWDGTVPPVTLPTSEVDAAVDAAIRAAGHLP
PPLMPRAVRPSLLNVRVAAHGVPLLDLGLRMGLWVRLRRLQVRKNLVTRT
LDASVGFTTAVNLLPPTTAEVHACVLAYLAAATAPGTGAAGVVPLPISAR
IPANAGGAGAALPQTPVARTAPMTTLTLPRPLAATGLAVSGAGAAASQPF
RCSIEEILGLPAPAECRCQVRAIKFFTMPGGQVIRKRKRGATGGAGGDSS
GADGAGDGASDGTEHIMALRLEDETAAIDAIVCGETLVRVLLGGLSPDAV
EVDTAAAAQAQERLRWLVSGAEPHPMELTVASSYRNLPGGGREKTYAVLG
PIVPSAA*
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mRNA from alignment at P-wetherbeei_contig162:3127..5224+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig162.4.1 ID=mRNA_P-wetherbeei_contig162.4.1|Name=mRNA_P-wetherbeei_contig162.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2098bp|location=Sequence derived from alignment at P-wetherbeei_contig162:3127..5224+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGTCAGCTGCACTGGCACTGGCAGGAGGATGCCCAGCCACTACACCTA
CAGCGCCCTCGCCGACCTGCCCGGGATAATCGCCCGGCAACAACAGCAGC
AGGGGCAGGTGCAAGCCAACCGCCCCGTCGCCGTCTACCTCTACGGCGTG
GTGTGCAGTTTCGGGCACCGTCACCAGACGGCAGGCGACAAGTTGGTGTC
GGTCAACCTGATCGACGAGACGGTGCCGGATCCCGCCGATAGCGTCAATA
CCAACCTTTTCTCGAGCCGCTGGGGAGACCTGCCGCAGGTGGCCATGGTC
GGCGACATTCTGCGCTTCCACCGCGCGGACCTCACCGTGCGCGCGACGCC
GTTCGGACCGCGGCCGCAGCTGGTCGCCCGCGTGCAGGCCCGCTCCGCGT
GGGTCCTACTTCGGCGCCGACGCCTCAAAGCCGCCGTGTACCAAACTGGG
CCGGAGGGCGGCGGTAGCAACGGCGCCGCCGTTCTTGCCGGCGGCGGAGT
GGGAACGGCGGCGGCGGGGGGCCACGCCACGTCGTTCGACCCGCGCGAAT
GGGAGGTGCTTCACAACCACGGCTCCATGACGATTGAGGCCAACGACGTG
GAGCGGGCGCGCCGCCTGTCGGACTGGTTTCTCGGCGCGCTGCCCACCAT
CCGGTTCAACAACCCCGGCGCTTCGAAGACGCTATCGGCCGTCTTCGCGC
CTCCGTCTCCGGCGGCGGCGGCGGCGGCCCAAGAGAACCGGTTGACGCAG
ATGGACGAGTACGCGGACGTGGTGGGTGTGCTGACCGGTCTGGAGGAGTC
GACGGAGGGCGGCCAATCGGCCGTCTCGCGCTTCACCGTCTGGGACGGCA
CCGTCCCGCCCGTTACCCTACCGACGTCGGAAGTCGACGCCGCCGTGGAT
GCGGCTATTCGCGCCGCCGGGCACCTGCCGCCGCCGCTGATGCCGCGCGC
CGTACGGCCGTCGCTGCTGAACGTGCGCGTGGCGGCGCACGGCGTGCCGC
TGCTAGACCTCGGGCTGCGGATGGGGCTTTGGGTGCGCCTGCGGCGGCTC
CAGGTCAGGAAGAACCTCGTCACACGGACGCTGGACGCCTCGGTGGGCTT
CACGACCGCCGTCAACCTGCTGCCGCCAACGACCGCTGAAGTGCACGCCT
GCGTGCTGGCATACCTCGCCGCCGCAACAGCGCCAGGAACGGGGGCGGCG
GGGGTGGTCCCGCTGCCGATCTCGGCTCGAATCCCTGCTAATGCCGGAGG
CGCAGGCGCTGCGCTGCCTCAAACACCGGTGGCGCGTACGGCGCCCATGA
CGACGCTGACGCTGCCGAGGCCCCTGGCAGCGACGGGGCTGGCGGTTAGC
GGTGCGGGTGCGGCGGCGTCCCAACCCTTCCGATGCAGCATCGAAGAGAT
TTTGGGGCTCCCGGCGCCGGCAGAGTGCCGGTGCCAGGTGCGCGCCATCA
AGTTCTTCACGATGCCGGGCGGGCAAGTAATCCGCAAGAGGAAACGCGGC
GCGACTGGCGGCGCGGGCGGTGACAGCAGCGGTGCGGACGGTGCAGGCGA
CGGCGCAAGTGACGGGACGGAACACATTATGGCGCTGCGCCTCGAGGACG
AGACAGCGGCGATCGACGCCATCGTGTGCGGGGAGACACTGGTGCGCGTA
TTGCTCGGCGGGTTGAGCCCCGACGCCGTCGAGGTCGACACGGCGGCGGC
GGCGCAGGCGCAGGAGAGGCTACGGTGGCTGGTCAGCGGGGCTGAGCCGC
ATCCGATGGAGCTGACAGTCGCGTCGTCGTACCGCAACTTGCCAGGAGGC
GGCCGGGAAAAGACTTACGCCGTTCTTGGCCCGATCGTGCCGTCGGCAGC
ATGAAGAAAGAGTTGAGCGTGGCGTCGGCAAATGCTGTGTGTAGTGAAAA
TTAAGCGCGGACAGACGCTCTCCCCAATGTAAGAAAGAAAAAGAGGGAGA
GAAGCAGCACCCACTAGCACTGCCGCTGCTGCGGCGGCATCAACGGCAGC
TGAAAGTTGCACAGTGACAGTGGATGGGAGCAGTGTGACGTCCCAATTGC
CGCCATCTGCCTGTCCTAACCACATGGCATCGTGAAATGCATATTCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig162:3127..5224+

>mRNA_P-wetherbeei_contig162.4.1 ID=mRNA_P-wetherbeei_contig162.4.1|Name=mRNA_P-wetherbeei_contig162.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1824bp|location=Sequence derived from alignment at P-wetherbeei_contig162:3127..5224+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCAGCCACTACACCTACAGCGCCCTCGCCGACCTGCCCGGGATAAT
CGCCCGGCAACAACAGCAGCAGGGGCAGGTGCAAGCCAACCGCCCCGTCG
CCGTCTACCTCTACGGCGTGGTGTGCAGTTTCGGGCACCGTCACCAGACG
GCAGGCGACAAGTTGGTGTCGGTCAACCTGATCGACGAGACGGTGCCGGA
TCCCGCCGATAGCGTCAATACCAACCTTTTCTCGAGCCGCTGGGGAGACC
TGCCGCAGGTGGCCATGGTCGGCGACATTCTGCGCTTCCACCGCGCGGAC
CTCACCGTGCGCGCGACGCCGTTCGGACCGCGGCCGCAGCTGGTCGCCCG
CGTGCAGGCCCGCTCCGCGTGGGTCCTACTTCGGCGCCGACGCCTCAAAG
CCGCCGTGTACCAAACTGGGCCGGAGGGCGGCGGTAGCAACGGCGCCGCC
GTTCTTGCCGGCGGCGGAGTGGGAACGGCGGCGGCGGGGGGCCACGCCAC
GTCGTTCGACCCGCGCGAATGGGAGGTGCTTCACAACCACGGCTCCATGA
CGATTGAGGCCAACGACGTGGAGCGGGCGCGCCGCCTGTCGGACTGGTTT
CTCGGCGCGCTGCCCACCATCCGGTTCAACAACCCCGGCGCTTCGAAGAC
GCTATCGGCCGTCTTCGCGCCTCCGTCTCCGGCGGCGGCGGCGGCGGCCC
AAGAGAACCGGTTGACGCAGATGGACGAGTACGCGGACGTGGTGGGTGTG
CTGACCGGTCTGGAGGAGTCGACGGAGGGCGGCCAATCGGCCGTCTCGCG
CTTCACCGTCTGGGACGGCACCGTCCCGCCCGTTACCCTACCGACGTCGG
AAGTCGACGCCGCCGTGGATGCGGCTATTCGCGCCGCCGGGCACCTGCCG
CCGCCGCTGATGCCGCGCGCCGTACGGCCGTCGCTGCTGAACGTGCGCGT
GGCGGCGCACGGCGTGCCGCTGCTAGACCTCGGGCTGCGGATGGGGCTTT
GGGTGCGCCTGCGGCGGCTCCAGGTCAGGAAGAACCTCGTCACACGGACG
CTGGACGCCTCGGTGGGCTTCACGACCGCCGTCAACCTGCTGCCGCCAAC
GACCGCTGAAGTGCACGCCTGCGTGCTGGCATACCTCGCCGCCGCAACAG
CGCCAGGAACGGGGGCGGCGGGGGTGGTCCCGCTGCCGATCTCGGCTCGA
ATCCCTGCTAATGCCGGAGGCGCAGGCGCTGCGCTGCCTCAAACACCGGT
GGCGCGTACGGCGCCCATGACGACGCTGACGCTGCCGAGGCCCCTGGCAG
CGACGGGGCTGGCGGTTAGCGGTGCGGGTGCGGCGGCGTCCCAACCCTTC
CGATGCAGCATCGAAGAGATTTTGGGGCTCCCGGCGCCGGCAGAGTGCCG
GTGCCAGGTGCGCGCCATCAAGTTCTTCACGATGCCGGGCGGGCAAGTAA
TCCGCAAGAGGAAACGCGGCGCGACTGGCGGCGCGGGCGGTGACAGCAGC
GGTGCGGACGGTGCAGGCGACGGCGCAAGTGACGGGACGGAACACATTAT
GGCGCTGCGCCTCGAGGACGAGACAGCGGCGATCGACGCCATCGTGTGCG
GGGAGACACTGGTGCGCGTATTGCTCGGCGGGTTGAGCCCCGACGCCGTC
GAGGTCGACACGGCGGCGGCGGCGCAGGCGCAGGAGAGGCTACGGTGGCT
GGTCAGCGGGGCTGAGCCGCATCCGATGGAGCTGACAGTCGCGTCGTCGT
ACCGCAACTTGCCAGGAGGCGGCCGGGAAAAGACTTACGCCGTTCTTGGC
CCGATCGTGCCGTCGGCAGCATGA
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