mRNA_P-wetherbeei_contig162.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig162.3.1
Unique NamemRNA_P-wetherbeei_contig162.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig162.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig162contigP-wetherbeei_contig162:2147..3044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size574
Hectar predicted targeting categoryother localisation
Exons3
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186079.6909523-CDS-P-wetherbeei_contig162:2146..22301683186079.6909523-CDS-P-wetherbeei_contig162:2146..2230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig162 2147..2230 +
1683186079.706001-CDS-P-wetherbeei_contig162:2309..23531683186079.706001-CDS-P-wetherbeei_contig162:2309..2353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig162 2310..2353 +
1683186079.7175684-CDS-P-wetherbeei_contig162:2600..30421683186079.7175684-CDS-P-wetherbeei_contig162:2600..3042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig162 2601..3042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig162.3.1prot_P-wetherbeei_contig162.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig162 2147..3042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig162.3.1

>prot_P-wetherbeei_contig162.3.1 ID=prot_P-wetherbeei_contig162.3.1|Name=mRNA_P-wetherbeei_contig162.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp
AIASTTPDSIDDSSPIDDPGPLHTRGTTVLTVELSDGISNADRIRLHFYD
EWARKFRFLERGCVVRLSGPIAVLVDTRARRRCDDHPCCIVVADDVLLEE
IVLGRRGSTADVCVEVDPPEAATAAAPGGHNGFIPAANLAAAAAAAPPRG
GSGGAASFPSVSVRGSQLATFVPPPVTLTKGAIQQARSER
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mRNA from alignment at P-wetherbeei_contig162:2147..3044+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig162.3.1 ID=mRNA_P-wetherbeei_contig162.3.1|Name=mRNA_P-wetherbeei_contig162.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=898bp|location=Sequence derived from alignment at P-wetherbeei_contig162:2147..3044+ (Phaeothamnion wetherbeei SAG_119_79)
GCTATTGCGTCGACCACGCCGGACAGCATCGACGACAGCTCCCCAATTGA
CGACCCTGGCCCTCTTCATACGCGAGGAACCACGGTAACTGTGACATACA
GAGGACTGTGAGAAAGGAAACCACAGCAACATAACGTACCACGAATCTCG
TTGACTTTGTCAGGTGCTGACGGTAGAGCTCTCGGACGGTATTTCGAACG
CGGACAGGTGAGGGATTCCTAGAACAGAACGCCGTGAGAATACGGCAGTT
GGCATTTTTCCTACCGTGTGCTTTCACGGCTGCAGGCGTCACATTTGCAT
TATCTTTTTGCATGCTTTCCCGCCGGAGGAAAACATAAGCATTGGCTGTC
ATCTGCTCTTTCCTCCGAAGTCAAGGACACTACTTCCACAATGCCAACTC
TGGCTCTCTTCATCTCTACCTGTTCGGCTTTGCTTTCATGTCGCTGCATC
GCAGAATCAGACTGCATTTCTACGACGAGTGGGCGCGCAAGTTTCGCTTC
CTGGAGCGCGGTTGCGTCGTCCGGCTCTCCGGCCCCATCGCCGTCCTTGT
GGATACGAGGGCGCGACGCCGCTGCGACGACCACCCTTGCTGCATCGTCG
TCGCCGACGACGTGCTGCTGGAAGAAATAGTGCTCGGACGGCGCGGCAGC
ACCGCTGACGTTTGCGTAGAGGTCGACCCGCCGGAGGCTGCCACCGCCGC
TGCTCCTGGAGGACACAACGGATTCATCCCTGCCGCCAACCTTGCTGCTG
CTGCGGCGGCAGCGCCGCCGCGCGGCGGCAGCGGCGGCGCGGCGTCCTTT
CCATCGGTCAGTGTGCGGGGCAGTCAACTAGCTACCTTTGTGCCACCTCC
TGTGACGCTCACCAAGGGTGCCATTCAGCAAGCCCGTAGCGAACGAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig162:2147..3044+

>mRNA_P-wetherbeei_contig162.3.1 ID=mRNA_P-wetherbeei_contig162.3.1|Name=mRNA_P-wetherbeei_contig162.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig162:2147..3044+ (Phaeothamnion wetherbeei SAG_119_79)
GCTATTGCGTCGACCACGCCGGACAGCATCGACGACAGCTCCCCAATTGA
CGACCCTGGCCCTCTTCATACGCGAGGAACCACGGTGCTGACGGTAGAGC
TCTCGGACGGTATTTCGAACGCGGACAGAATCAGACTGCATTTCTACGAC
GAGTGGGCGCGCAAGTTTCGCTTCCTGGAGCGCGGTTGCGTCGTCCGGCT
CTCCGGCCCCATCGCCGTCCTTGTGGATACGAGGGCGCGACGCCGCTGCG
ACGACCACCCTTGCTGCATCGTCGTCGCCGACGACGTGCTGCTGGAAGAA
ATAGTGCTCGGACGGCGCGGCAGCACCGCTGACGTTTGCGTAGAGGTCGA
CCCGCCGGAGGCTGCCACCGCCGCTGCTCCTGGAGGACACAACGGATTCA
TCCCTGCCGCCAACCTTGCTGCTGCTGCGGCGGCAGCGCCGCCGCGCGGC
GGCAGCGGCGGCGCGGCGTCCTTTCCATCGGTCAGTGTGCGGGGCAGTCA
ACTAGCTACCTTTGTGCCACCTCCTGTGACGCTCACCAAGGGTGCCATTC
AGCAAGCCCGTAGCGAACGA
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