mRNA_P-wetherbeei_contig16163.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16163.1.1
Unique NamemRNA_P-wetherbeei_contig16163.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16163.1.1 vs. uniprot
Match: A0A6I3F888_9ACTN (Peptidoglycan DD-metalloendopeptidase family protein n=3 Tax=root TaxID=1 RepID=A0A6I3F888_9ACTN)

HSP 1 Score: 72.0 bits (175), Expect = 1.160e-13
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   55 ARRLYPPGMLMFPMNVSPTCYVLNNFADPRDGGTRSHEGVDIIAKLGQAIYAVTDG 222
            A+RL PP    FPM V+P C +L+NF DPR GG R+HEGVDI+A LGQ +YA+ DG
Sbjct:   53 AQRLRPPAPENFPMQVTPRCMILDNFGDPRSGG-RTHEGVDIMATLGQEVYAMADG 107          
BLAST of mRNA_P-wetherbeei_contig16163.1.1 vs. uniprot
Match: A0A7K1B2J3_9ACTN (Peptidoglycan DD-metalloendopeptidase family protein n=2 Tax=root TaxID=1 RepID=A0A7K1B2J3_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 6.840e-12
Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   10 AAIEAIPV--AATAQVQARRL---YPPGMLMFPMNVSPTCYVLNNFADPRDGGTRSHEGVDIIAKLGQAIYAVTDGI 225
            AA   IP+   AT    ARRL      G +MFPM  SP C +L+NF D R GG R HEGVDI+A LGQ +YAV DG+
Sbjct:   38 AAAAPIPIERGATVGAPARRLGLVADAGRIMFPMGPSPRCDILDNFGDLRSGGRR-HEGVDILATLGQEVYAVADGV 113          
BLAST of mRNA_P-wetherbeei_contig16163.1.1 vs. uniprot
Match: A0A3C2B1R0_9ACTN (LysM domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B1R0_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 2.430e-7
Identity = 28/41 (68.29%), Postives = 29/41 (70.73%), Query Frame = 1
Query:  100 VSPTCYVLNNFADPRDGGTRSHEGVDIIAKLGQAIYAVTDG 222
            V  TCY  + F  PR GG RSHEGVDIIAK GQ IYA TDG
Sbjct:  135 VQGTCYFTDTFGAPRSGG-RSHEGVDIIAKSGQYIYAATDG 174          
BLAST of mRNA_P-wetherbeei_contig16163.1.1 vs. uniprot
Match: A0A4R7HX62_9ACTN (Peptidase M23-like protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HX62_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 9.770e-7
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   82 LMFPMNVSPTCYVLNNFAD-PRDGGTRSHEGVDIIAKLGQAIYAVTDGIVEVR 237
            L+FP+  SP C VLNNF    +  G   H+GVDI A  GQ +YAV DG++E++
Sbjct:   41 LLFPIEPSPMCEVLNNFGGHSKAQGAGQHDGVDIGAMEGQEVYAVADGVLEIQ 93          
BLAST of mRNA_P-wetherbeei_contig16163.1.1 vs. uniprot
Match: A0A5C6Z3D4_9FLAO (M23 family metallopeptidase n=1 Tax=Aequorivita antarctica TaxID=153266 RepID=A0A5C6Z3D4_9FLAO)

HSP 1 Score: 53.5 bits (127), Expect = 2.030e-6
Identity = 23/57 (40.35%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   61 RLYPPGMLMFPMNVSPTCYVLNNFADPRDGGTRSHEGVDIIAKLGQAIYAVTDGIVE 231
            ++Y   +  FP++ +    + + +ADPRD G+RSHEG+DI A+ G  + A+TDGI++
Sbjct:  165 KIYTEPLYAFPVSGADNKSIQSFWADPRDTGSRSHEGIDIFAERGTPVVAITDGIID 221          
BLAST of mRNA_P-wetherbeei_contig16163.1.1 vs. uniprot
Match: A0A137RF70_9FLAO (Peptidase_M23 domain-containing protein n=2 Tax=Aequorivita TaxID=153265 RepID=A0A137RF70_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 2.770e-6
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   61 RLYPPGMLMFPMNVSPTCYVLNNFADPRDGGTRSHEGVDIIAKLGQAIYAVTDGIV 228
            ++Y   +  FP++ +    + + +ADPRD G+RSHEGVDI A  G  + AVTDGI+
Sbjct:  164 KIYTEPIYAFPVSGANNKNIQSFWADPRDAGSRSHEGVDIFANRGTPVVAVTDGII 219          
BLAST of mRNA_P-wetherbeei_contig16163.1.1 vs. uniprot
Match: A0A330MHU3_9FLAO (L-Ala--D-Glu endopeptidase n=1 Tax=Aequorivita sp. CIP111184 TaxID=2211356 RepID=A0A330MHU3_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 2.770e-6
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   61 RLYPPGMLMFPMNVSPTCYVLNNFADPRDGGTRSHEGVDIIAKLGQAIYAVTDGIV 228
            ++Y   +  FP++ +    + + +ADPRD G+RSHEGVDI A  G  + AVTDGIV
Sbjct:  164 KIYTEPLYEFPVSGAGNKNIQSFWADPRDAGSRSHEGVDIFADRGTPVVAVTDGIV 219          
BLAST of mRNA_P-wetherbeei_contig16163.1.1 vs. uniprot
Match: A0A167IV50_9FLAO (Peptidase_M23 domain-containing protein n=2 Tax=Cochleicola gelatinilyticus TaxID=1763537 RepID=A0A167IV50_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 2.790e-6
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   88 FPMNVSPTCYVLNNFADPRDGGTRSHEGVDIIAKLGQAIYAVTDG 222
            FP++ +    + + +ADPRDGG+RSHEGVDI AK G  + A+TDG
Sbjct:  192 FPVSGAGNKNIQSFWADPRDGGSRSHEGVDIFAKRGTPVVAITDG 236          
BLAST of mRNA_P-wetherbeei_contig16163.1.1 vs. uniprot
Match: A0A7K0EYD8_9FLAO (M23 family metallopeptidase n=2 Tax=Aequorivita TaxID=153265 RepID=A0A7K0EYD8_9FLAO)

HSP 1 Score: 52.8 bits (125), Expect = 3.790e-6
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   61 RLYPPGMLMFPMNVSPTCYVLNNFADPRDGGTRSHEGVDIIAKLGQAIYAVTDGIV 228
            ++Y   +  FP++ +    + + +ADPRD G+RSHEGVDI A  G  + AVTDG++
Sbjct:  164 KIYTEPIYAFPVSGADNKNIQSFWADPRDAGSRSHEGVDIFADRGTPVVAVTDGVI 219          
BLAST of mRNA_P-wetherbeei_contig16163.1.1 vs. uniprot
Match: A0A1A9LD72_9FLAO (SH3b domain-containing protein n=2 Tax=Aequorivita soesokkakensis TaxID=1385699 RepID=A0A1A9LD72_9FLAO)

HSP 1 Score: 52.0 bits (123), Expect = 7.100e-6
Identity = 23/57 (40.35%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   61 RLYPPGMLMFPMNVSPTCYVLNNFADPRDGGTRSHEGVDIIAKLGQAIYAVTDGIVE 231
            ++Y   + +FP++   +  + + +ADPRD G+RSHEGVDI A  G  + A++DGI++
Sbjct:  165 KIYTEPLYVFPVSGGNSKNIQSFWADPRDTGSRSHEGVDIFADRGTPVIAISDGIID 221          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16163.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6I3F888_9ACTN1.160e-1360.71Peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A7K1B2J3_9ACTN6.840e-1253.25Peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A3C2B1R0_9ACTN2.430e-768.29LysM domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A4R7HX62_9ACTN9.770e-749.06Peptidase M23-like protein n=1 Tax=Ilumatobacter f... [more]
A0A5C6Z3D4_9FLAO2.030e-640.35M23 family metallopeptidase n=1 Tax=Aequorivita an... [more]
A0A137RF70_9FLAO2.770e-644.64Peptidase_M23 domain-containing protein n=2 Tax=Ae... [more]
A0A330MHU3_9FLAO2.770e-646.43L-Ala--D-Glu endopeptidase n=1 Tax=Aequorivita sp.... [more]
A0A167IV50_9FLAO2.790e-653.33Peptidase_M23 domain-containing protein n=2 Tax=Co... [more]
A0A7K0EYD8_9FLAO3.790e-642.86M23 family metallopeptidase n=2 Tax=Aequorivita Ta... [more]
A0A1A9LD72_9FLAO7.100e-640.35SH3b domain-containing protein n=2 Tax=Aequorivita... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16163contigP-wetherbeei_contig16163:96..335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1026882.MAMP_00578
PFAMsPeptidase_M23
Model size240
Max annot lvl72273|Thiotrichales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.16e-06
EggNOG OGsCOG0739@1|root,COG0739@2|Bacteria,1RK0U@1224|Proteobacteria,1S6P9@1236|Gammaproteobacteria,463JP@72273|Thiotrichales
DescriptionPeptidase family M23
Cds size240
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186078.9449956-CDS-P-wetherbeei_contig16163:95..3351683186078.9449956-CDS-P-wetherbeei_contig16163:95..335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16163 96..335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16163.1.1prot_P-wetherbeei_contig16163.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16163 96..335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16163.1.1

>prot_P-wetherbeei_contig16163.1.1 ID=prot_P-wetherbeei_contig16163.1.1|Name=mRNA_P-wetherbeei_contig16163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
AAPAAIEAIPVAATAQVQARRLYPPGMLMFPMNVSPTCYVLNNFADPRDG
GTRSHEGVDIIAKLGQAIYAVTDGIVEVRA
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mRNA from alignment at P-wetherbeei_contig16163:96..335-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16163.1.1 ID=mRNA_P-wetherbeei_contig16163.1.1|Name=mRNA_P-wetherbeei_contig16163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig16163:96..335- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCTCCGGCGGCGATCGAGGCCATCCCCGTCGCGGCGACCGCACAAGT GCAGGCGCGGCGGCTGTACCCGCCGGGGATGCTCATGTTCCCGATGAACG TGTCGCCGACGTGCTACGTGCTGAACAACTTCGCCGATCCACGCGATGGG GGCACGCGCAGCCACGAGGGCGTCGACATCATCGCCAAGTTGGGACAGGC GATCTACGCGGTCACCGACGGGATCGTCGAGGTTCGTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16163:96..335-

>mRNA_P-wetherbeei_contig16163.1.1 ID=mRNA_P-wetherbeei_contig16163.1.1|Name=mRNA_P-wetherbeei_contig16163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig16163:96..335- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCTCCGGCGGCGATCGAGGCCATCCCCGTCGCGGCGACCGCACAAGT
GCAGGCGCGGCGGCTGTACCCGCCGGGGATGCTCATGTTCCCGATGAACG
TGTCGCCGACGTGCTACGTGCTGAACAACTTCGCCGATCCACGCGATGGG
GGCACGCGCAGCCACGAGGGCGTCGACATCATCGCCAAGTTGGGACAGGC
GATCTACGCGGTCACCGACGGGATCGTCGAGGTTCGTGCG
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