mRNA_P-wetherbeei_contig16142.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16142.1.1
Unique NamemRNA_P-wetherbeei_contig16142.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16142.1.1 vs. uniprot
Match: A0A355TTR3_9BACT (50S ribosomal protein L23 n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TTR3_9BACT)

HSP 1 Score: 104 bits (260), Expect = 6.440e-27
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    1 KVVSSVADLRSLTDRDIIKRPIITEKSIANSADNKYTFEVAVAANKIMIRNAVQRVFGVNVTKVTTVRQMGSIRRKARKDEGVTPETKKAVVTLKAGQQIEFDGRPLFE 327
            K+ SSV +LR  T  D++ RP+ITEKS+   ADNKYTF V + ANK  IRNAV+ +F V VTKVTTVR  G ++R+ R   G  P+ KKA V++KAG +IE  G PLFE
Sbjct:    5 KITSSVHNLRYST-HDVLLRPLITEKSMEQHADNKYTFLVDLKANKFDIRNAVESMFNVTVTKVTTVRMRGKVKRRGRV-YGKRPDYKKAYVSIKAGDKIEVAGAPLFE 111          
BLAST of mRNA_P-wetherbeei_contig16142.1.1 vs. uniprot
Match: A0A1V5BSH8_9FIRM (50S ribosomal protein L23 n=2 Tax=Pelotomaculum TaxID=191373 RepID=A0A1V5BSH8_9FIRM)

HSP 1 Score: 90.5 bits (223), Expect = 1.650e-21
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1
Query:   43 RDIIKRPIITEKSIANSADNKYTFEVAVAANKIMIRNAVQRVFGVNVTKVTTVRQMGSIRRKARKDEGVTPETKKAVVTLKAGQQIE-FDG 312
            RDI+++P+ITEKS + S DNKYTF V + ANK+ IR AV+ +F V V KV T+R  G ++R  R+  G TP+TKKA+VTLK G +IE F+G
Sbjct:    5 RDILRKPVITEKSTSLSKDNKYTFIVDLKANKVEIRQAVENLFKVKVKKVNTMRVKGKLKR-VRRIPGRTPDTKKAIVTLKEGDRIEIFEG 94          
BLAST of mRNA_P-wetherbeei_contig16142.1.1 vs. uniprot
Match: A0A7C6UQ20_9FIRM (50S ribosomal protein L23 n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C6UQ20_9FIRM)

HSP 1 Score: 89.7 bits (221), Expect = 3.320e-21
Identity = 52/94 (55.32%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   34 LTDRDIIKRPIITEKSIANSADNKYTFEVAVAANKIMIRNAVQRVFGVNVTKVTTVRQMGSIRRKARKDEGVTPETKKAVVTLKAGQQIE-FDG 312
            +  RDII RPI+TEKS    ADNKYTFEVA+ ANK  I+ A++ +F V V KV T R  G +RR  R  EG T + KKAVVTL+ G  IE F+G
Sbjct:    2 MESRDIIIRPIVTEKSTDLMADNKYTFEVALRANKTQIKKAIEDIFAVKVIKVNTARVRGKLRRMGR-HEGYTSDWKKAVVTLQEGHHIEVFEG 94          
BLAST of mRNA_P-wetherbeei_contig16142.1.1 vs. uniprot
Match: A0A522QTT6_9BACT (50S ribosomal protein L23 n=2 Tax=bacterium TaxID=1869227 RepID=A0A522QTT6_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 4.490e-21
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   25 LRSLTDRDIIKRPIITEKSIANSADNKYTFEVAVAANKIMIRNAVQRVFGVNVTKVTTVRQMGSI----RRKARKDEGVTPETKKAVVTLKAGQQIEFDGRPLFE 327
            +R +  RD++  P+ITEKS+AN+   +YTF VA AA K  IR+AV+ +F VNVTKV T    G +    RR+AR   G   + KKA+VTLK GQ+IE  G   FE
Sbjct:    1 MRIMDARDVVLAPLITEKSMANTMGQQYTFRVASAATKTQIRHAVEDIFKVNVTKVNTTNVKGKMKSFSRRRARPTSGKQSDWKKAIVTLKDGQKIELGGVNFFE 105          
BLAST of mRNA_P-wetherbeei_contig16142.1.1 vs. uniprot
Match: A0A356BYB2_9FIRM (50S ribosomal protein L23 n=4 Tax=Firmicutes TaxID=1239 RepID=A0A356BYB2_9FIRM)

HSP 1 Score: 89.0 bits (219), Expect = 6.490e-21
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   43 RDIIKRPIITEKSIANSADNKYTFEVAVAANKIMIRNAVQRVFGVNVTKVTTVRQMGSIRRKARKDEGVTPETKKAVVTLKAGQQIEFDG 312
            RDI+KRPI+TEKS    A+NKYTFEV + ANK+ ++ AV+ +F V V +V T+R  G +RR  R  EG T + KKAVVTLK G  IE  G
Sbjct:    4 RDILKRPIVTEKSTDLMAENKYTFEVDLRANKMQVKAAVEEIFNVEVEQVNTLRVKGKLRRMGR-HEGYTSDWKKAVVTLKPGHSIEVFG 92          
BLAST of mRNA_P-wetherbeei_contig16142.1.1 vs. uniprot
Match: A0A3C1QPY1_9FIRM (50S ribosomal protein L23 n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A3C1QPY1_9FIRM)

HSP 1 Score: 89.0 bits (219), Expect = 6.490e-21
Identity = 53/90 (58.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   43 RDIIKRPIITEKSIANSADNKYTFEVAVAANKIMIRNAVQRVFGVNVTKVTTVRQMGSIRRKARKDEGVTPETKKAVVTLKAGQQIEFDG 312
            RDIIKRPIITEKS    A NKYTFEV + A K  I+ AV+ +FGV V KV T R  G +RR  R  EG T + KKAVVTLK G  IE  G
Sbjct:    4 RDIIKRPIITEKSTDLMAQNKYTFEVDMRATKPQIKAAVEEIFGVKVEKVNTARIRGKLRRMGR-HEGYTSDWKKAVVTLKPGHSIEVFG 92          
BLAST of mRNA_P-wetherbeei_contig16142.1.1 vs. uniprot
Match: A0A7C6IPK4_9CLOT (50S ribosomal protein L23 n=1 Tax=Natronincola sp. TaxID=2699832 RepID=A0A7C6IPK4_9CLOT)

HSP 1 Score: 88.6 bits (218), Expect = 9.200e-21
Identity = 52/90 (57.78%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   43 RDIIKRPIITEKSIANSADNKYTFEVAVAANKIMIRNAVQRVFGVNVTKVTTVRQMGSIRRKARKDEGVTPETKKAVVTLKAGQQIEFDG 312
            RDIIK+PI+TEKS    ADNKYTFEV + A+KI I+ AV+ +F V V KV T R  G +RR  R  EG T   KKAVVTLK G  IE  G
Sbjct:    4 RDIIKKPIVTEKSTDLMADNKYTFEVDLRASKIQIKLAVEEIFDVKVQKVNTSRVKGKLRRMGR-HEGYTSNWKKAVVTLKPGHSIEVFG 92          
BLAST of mRNA_P-wetherbeei_contig16142.1.1 vs. uniprot
Match: A0A1V5BMP5_9FIRM (50S ribosomal protein L23 n=2 Tax=unclassified Pelotomaculum TaxID=2621639 RepID=A0A1V5BMP5_9FIRM)

HSP 1 Score: 87.8 bits (216), Expect = 1.900e-20
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   43 RDIIKRPIITEKSIANSADNKYTFEVAVAANKIMIRNAVQRVFGVNVTKVTTVRQMGSIRRKARKDEGVTPETKKAVVTLKAGQQIE-FDG 312
            RDI+++P++TEKS +   DNKYTF V + ANK+ IR AV+ +F V V KV T+R  G I+R  R+  G TP+TKKA+VTLK G +IE F+G
Sbjct:    5 RDILRKPLVTEKSTSLLKDNKYTFMVDLKANKVEIRQAVEDLFKVKVEKVNTMRVKGRIKR-VRRIPGKTPDTKKAIVTLKKGDRIEIFEG 94          
BLAST of mRNA_P-wetherbeei_contig16142.1.1 vs. uniprot
Match: R4KHC1_9FIRM (50S ribosomal protein L23 n=3 Tax=Desulfallaceae TaxID=2867375 RepID=R4KHC1_9FIRM)

HSP 1 Score: 87.4 bits (215), Expect = 2.700e-20
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 1
Query:   43 RDIIKRPIITEKSIANSADNKYTFEVAVAANKIMIRNAVQRVFGVNVTKVTTVRQMGSIRRKARKDEGVTPETKKAVVTLKAGQQIE-FDG 312
            RDIIK+P++TEKS+    +NKYTF V + ANKI IR AV+ +F V V KV T+R  G ++R  R   G TP+ KKA+VTLK GQ+I+ F+G
Sbjct:    5 RDIIKKPVVTEKSMGLVEENKYTFIVDMGANKIEIRQAVEELFNVKVDKVRTMRVKGKLKR-VRNRWGKTPDRKKAIVTLKEGQKIQLFEG 94          
BLAST of mRNA_P-wetherbeei_contig16142.1.1 vs. uniprot
Match: A0A0F2PTV8_9FIRM (50S ribosomal protein L23 n=2 Tax=Peptococcaceae TaxID=186807 RepID=A0A0F2PTV8_9FIRM)

HSP 1 Score: 87.0 bits (214), Expect = 3.830e-20
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   43 RDIIKRPIITEKSIANSADNKYTFEVAVAANKIMIRNAVQRVFGVNVTKVTTVRQMGSIRRKARKDEGVTPETKKAVVTLKAGQQIE-FDG 312
            RDI+KRP++TEKS+A  A+NK+TF V + ANK+ I+ AV+ +F V V KV T+R  G +RR  R   G TP+ KKA+VTLK G +IE F+G
Sbjct:    5 RDILKRPVVTEKSMALQAENKFTFIVDLKANKVEIKKAVEELFKVKVKKVHTMRYKGKLRR-VRNVLGRTPDYKKAIVTLKEGDKIELFEG 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16142.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A355TTR3_9BACT6.440e-2755.0550S ribosomal protein L23 n=1 Tax=bacterium UBP9_U... [more]
A0A1V5BSH8_9FIRM1.650e-2154.9550S ribosomal protein L23 n=2 Tax=Pelotomaculum Ta... [more]
A0A7C6UQ20_9FIRM3.320e-2155.3250S ribosomal protein L23 n=1 Tax=Firmicutes bacte... [more]
A0A522QTT6_9BACT4.490e-2148.5750S ribosomal protein L23 n=2 Tax=bacterium TaxID=... [more]
A0A356BYB2_9FIRM6.490e-2154.4450S ribosomal protein L23 n=4 Tax=Firmicutes TaxID... [more]
A0A3C1QPY1_9FIRM6.490e-2158.8950S ribosomal protein L23 n=1 Tax=Firmicutes bacte... [more]
A0A7C6IPK4_9CLOT9.200e-2157.7850S ribosomal protein L23 n=1 Tax=Natronincola sp.... [more]
A0A1V5BMP5_9FIRM1.900e-2053.8550S ribosomal protein L23 n=2 Tax=unclassified Pel... [more]
R4KHC1_9FIRM2.700e-2053.8550S ribosomal protein L23 n=3 Tax=Desulfallaceae T... [more]
A0A0F2PTV8_9FIRM3.830e-2053.8550S ribosomal protein L23 n=2 Tax=Peptococcaceae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16142contigP-wetherbeei_contig16142:93..425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog767817.Desgi_0367
Preferred namerplW
PFAMsRibosomal_L23
Model size333
Max annot lvl186801|Clostridia
KEGG koko:K02892
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.42e-21
EggNOG OGsCOG0089@1|root,COG0089@2|Bacteria,1VA4W@1239|Firmicutes,24MN8@186801|Clostridia,262FH@186807|Peptococcaceae
DescriptionOne of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
Cds size333
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186078.3842645-CDS-P-wetherbeei_contig16142:92..4251683186078.3842645-CDS-P-wetherbeei_contig16142:92..425Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16142 93..425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16142.1.1prot_P-wetherbeei_contig16142.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16142 93..425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16142.1.1

>prot_P-wetherbeei_contig16142.1.1 ID=prot_P-wetherbeei_contig16142.1.1|Name=mRNA_P-wetherbeei_contig16142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
KVVSSVADLRSLTDRDIIKRPIITEKSIANSADNKYTFEVAVAANKIMIR
NAVQRVFGVNVTKVTTVRQMGSIRRKARKDEGVTPETKKAVVTLKAGQQI
EFDGRPLFEV*
back to top

mRNA from alignment at P-wetherbeei_contig16142:93..425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16142.1.1 ID=mRNA_P-wetherbeei_contig16142.1.1|Name=mRNA_P-wetherbeei_contig16142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig16142:93..425+ (Phaeothamnion wetherbeei SAG_119_79)
AAAGTTGTGTCTTCGGTAGCCGATCTTCGCAGTCTAACCGACCGCGATAT CATCAAGCGCCCGATTATCACGGAGAAAAGCATCGCTAACTCTGCAGACA ACAAGTACACCTTCGAGGTTGCGGTTGCTGCCAACAAGATCATGATCCGA AACGCCGTGCAGCGTGTCTTCGGCGTGAACGTTACCAAGGTGACCACCGT ACGTCAAATGGGCAGTATCCGTCGCAAGGCTCGCAAGGACGAGGGCGTAA CGCCCGAGACCAAAAAAGCTGTCGTCACGCTCAAGGCTGGCCAGCAGATC GAGTTCGACGGACGCCCCCTGTTTGAGGTCTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16142:93..425+

>mRNA_P-wetherbeei_contig16142.1.1 ID=mRNA_P-wetherbeei_contig16142.1.1|Name=mRNA_P-wetherbeei_contig16142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig16142:93..425+ (Phaeothamnion wetherbeei SAG_119_79)
AAAGTTGTGTCTTCGGTAGCCGATCTTCGCAGTCTAACCGACCGCGATAT
CATCAAGCGCCCGATTATCACGGAGAAAAGCATCGCTAACTCTGCAGACA
ACAAGTACACCTTCGAGGTTGCGGTTGCTGCCAACAAGATCATGATCCGA
AACGCCGTGCAGCGTGTCTTCGGCGTGAACGTTACCAAGGTGACCACCGT
ACGTCAAATGGGCAGTATCCGTCGCAAGGCTCGCAAGGACGAGGGCGTAA
CGCCCGAGACCAAAAAAGCTGTCGTCACGCTCAAGGCTGGCCAGCAGATC
GAGTTCGACGGACGCCCCCTGTTTGAGGTCTAA
back to top