mRNA_P-wetherbeei_contig16099.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16099.2.1
Unique NamemRNA_P-wetherbeei_contig16099.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16099.2.1 vs. uniprot
Match: A0A0Q9QM65_9GAMM (Phosphoglycerate mutase n=1 Tax=Frateuria sp. Soil773 TaxID=1736407 RepID=A0A0Q9QM65_9GAMM)

HSP 1 Score: 92.8 bits (229), Expect = 6.950e-21
Identity = 63/158 (39.87%), Postives = 87/158 (55.06%), Query Frame = 1
Query:   10 MKSLMLLRHAEALPAAAAVSDLERKLSVHGERQARRLGKWLGARSWTPQAILCSAALRARQTAEALAAAATWPTPLTVLEDLYNANAEDMIAVLRKQAVNIDSLLLVAHAPGIGELAGALTTRQSDLSLACEPATLIEVVAALDDWSELGRNSGNLRL 483
            M  L+LLRHAEA+PAA+   D ER LS HGE++AR  G+WL A    P+ +LCS A R RQTA+   AAA       + +++Y+A   +++A+L +   +  +++LV H PGI  L   L   +SD      P  L   V  LD   E     GN RL
Sbjct:    1 MHELILLRHAEAVPAASGGDDRERPLSQHGEQEARAAGQWLAAHGARPERVLCSPARRTRQTADLALAAAGNALAAQLADEIYDATPGELLALLDQHG-DAGTVMLVGHNPGIERLVALLVEGRSDEFRGMPPGGL--AVLHLDGALE----PGNARL 151          
BLAST of mRNA_P-wetherbeei_contig16099.2.1 vs. uniprot
Match: UPI00180E0C91 (Histidine phosphatase family protein n=1 Tax=Frateuria sp. TaxID=2211372 RepID=UPI00180E0C91)

HSP 1 Score: 92.0 bits (227), Expect = 1.380e-20
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   10 MKSLMLLRHAEALPAAAAVSDLERKLSVHGERQARRLGKWLGARSWTPQAILCSAALRARQTAEALAAAATWPT-PLTVLEDLYNANAEDMIAVLRKQAVNIDSLLLVAHAPGIGELAGALTTRQSDLSLACEPATL 417
            M+ L+LLRHAEA+PA A   DL+R LS  GE++A   G WL A    P  +LCS A RAR+TAE LAA +  PT  + + E++Y+A+  +++A+L + A +  S+LLV H PGI  L   L   +SD      PA L
Sbjct:    1 MQELILLRHAEAVPAPAGGEDLDRTLSPRGEQEALAAGHWLAAHGARPDRLLCSPAQRARRTAE-LAARSVAPTGAIGLAEEIYDASPGELLALLDQHA-DARSVLLVGHNPGIERLVALLVDGRSDDFRGMPPAGL 135          
BLAST of mRNA_P-wetherbeei_contig16099.2.1 vs. uniprot
Match: A0A171DCK6_9ACTN (Phosphohistidine phosphatase n=7 Tax=Streptosporangiaceae TaxID=2004 RepID=A0A171DCK6_9ACTN)

HSP 1 Score: 89.4 bits (220), Expect = 1.460e-19
Identity = 57/149 (38.26%), Postives = 83/149 (55.70%), Query Frame = 1
Query:   10 MKSLMLLRHAEALPAAAAVSDLERKLSVHGERQARRLGKWLGARSWTPQAILCSAALRARQTAEALAAAATWPTPLTVLEDLYNANAEDMIAVLRKQAVNIDSLLLVAHAPGIGELAGALTTRQSDLSLACEPATLIEVVAALDDWSEL 456
            M++L++LRHA+A      ++D ER L+  GE  ARR+G+ L      P  +LCS A R R+TAE     A+    +    D+Y A A+D++A+LR+   ++ +LLLV H PG+ EL   LTTR  D      P     V+   D W+EL
Sbjct:    1 MRTLIVLRHAKAAHRPG-LADWERPLTERGEHDARRVGEVLAELGLRPDLVLCSPAARTRRTAELALPGAS----VEFERDVYEAYADDLLALLRRTGPDVGTLLLVGHNPGVHELVMELTTRDGDPGF---PPGAFAVIETADAWAEL 141          
BLAST of mRNA_P-wetherbeei_contig16099.2.1 vs. uniprot
Match: UPI00066FE48D (histidine phosphatase family protein n=1 Tax=Frateuria defendens TaxID=2219559 RepID=UPI00066FE48D)

HSP 1 Score: 89.4 bits (220), Expect = 1.540e-19
Identity = 57/136 (41.91%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   10 MKSLMLLRHAEALPAAAAVSDLERKLSVHGERQARRLGKWLGARSWTPQAILCSAALRARQTAEALAAAATWPTPLTVLEDLYNANAEDMIAVLRKQAVNIDSLLLVAHAPGIGELAGALTTRQSDLSLACEPATL 417
            M  L+LLRHAEALPA     D ER LS  GE +A   G+WL A       +LCS A+R R+TAE + AAA     L   E++Y+A   +++A+L +   + D LLLV H PGI  L   +   +SD      PA L
Sbjct:    1 MHELILLRHAEALPARPGGKDRERALSPRGEAEADAAGRWLAAHGVKAARVLCSPAVRTRETAERVLAAAGQSPELLFAEEIYDATPGELLALLDQYEAH-DPLLLVGHNPGIERLVALMVEGRSDEFRGMPPAGL 135          
BLAST of mRNA_P-wetherbeei_contig16099.2.1 vs. uniprot
Match: A0A2E1VYA3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VYA3_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 1.870e-19
Identity = 64/169 (37.87%), Postives = 88/169 (52.07%), Query Frame = 1
Query:   10 MKSLMLLRHAEA-----LPAAAAVSDLERKLSVHGERQARRLGKWLGARSWTPQAILCSAALRARQTAEALAAAATWPT---PLTVLEDLYNANAEDMIAVLRKQAVNIDSLLLVAHAPGIGELAGALTTRQSDLSLACEPATLIEVVAALDDWSELGRNSGNLRLLLP 492
            M++L+LLRH ++     LP      D +R LS  G + A  +GK+L     TP  +LCS ALR R+T E LA A  W     P  +L +LY A+AED++  +R+      +LL++AH PG   L   LT  +    L    A L  + A  + W  L  N G LRLLLP
Sbjct:    1 MRTLLLLRHGKSDWDHDLP------DHQRPLSKRGRKAANAMGKYLATAGPTPHRVLCSDALRTRETWEILADAG-WGAQAPPCEMLPELYLASAEDLLRRIRQVEAEAKTLLVIAHEPGCSGLVHLLTGAR----LRYPTAALARIDAPHESWRALAENEGELRLLLP 158          
BLAST of mRNA_P-wetherbeei_contig16099.2.1 vs. uniprot
Match: A0A8J3RYX7_PLARO (Phosphohistidine phosphatase n=2 Tax=Planobispora TaxID=29298 RepID=A0A8J3RYX7_PLARO)

HSP 1 Score: 89.0 bits (219), Expect = 2.060e-19
Identity = 57/149 (38.26%), Postives = 85/149 (57.05%), Query Frame = 1
Query:   10 MKSLMLLRHAEALPAAAAVSDLERKLSVHGERQARRLGKWLGARSWTPQAILCSAALRARQTAEALAAAATWPTPLTVLEDLYNANAEDMIAVLRKQAVNIDSLLLVAHAPGIGELAGALTTRQSDLSLACEPATLIEVVAALDDWSEL 456
            M++L++LRHA+A+     ++D ER L+  GER ARR+G+ L A    P  +LCS A+R RQTAE     A    P+    D+Y A A++++ ++R     + +LLLV H PG  EL   LTTR  D      P     V+ + ++W+EL
Sbjct:    1 MRTLIVLRHAKAVHTPG-LADPERPLTERGERDARRVGETLVALGLRPDLVLCSPAVRTRQTAEL----ALPGEPIEFERDIYEAYADELLTLIRGTDPRVRTLLLVGHNPGAHELVMGLTTRDGDPGF---PPGAFAVIESDEEWAEL 141          
BLAST of mRNA_P-wetherbeei_contig16099.2.1 vs. uniprot
Match: A0A160N3X9_9GAMM (Uncharacterized protein n=2 Tax=Xanthomonadales TaxID=135614 RepID=A0A160N3X9_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 2.170e-19
Identity = 54/136 (39.71%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   10 MKSLMLLRHAEALPAAAAVSDLERKLSVHGERQARRLGKWLGARSWTPQAILCSAALRARQTAEALAAAATWPTPLTVLEDLYNANAEDMIAVLRKQAVNIDSLLLVAHAPGIGELAGALTTRQSDLSLACEPATL 417
            M  L+LLRHAEALPA+    D ER+LS HGE++AR  G WL      PQ +LCS A R R TA+    A      L   E++Y+A   +++A+L +   ++ ++++V H PGI  L   L   +SD      PA L
Sbjct:    1 MLELILLRHAEALPASPGDDDRERRLSGHGEQEARAAGSWLARHGARPQRVLCSPAERTRATAQLAMEALDHAPELAYAEEIYDATPGELLALLDEHE-SVATVMVVGHNPGIERLVALLVEGRSDEFRGMPPAGL 135          
BLAST of mRNA_P-wetherbeei_contig16099.2.1 vs. uniprot
Match: A0A1E4Q293_9GAMM (Phosphoglycerate mutase n=1 Tax=Rhodanobacter sp. SCN 68-63 TaxID=1660134 RepID=A0A1E4Q293_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 2.170e-19
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   10 MKSLMLLRHAEALPAAAAVSDLERKLSVHGERQARRLGKWLGARSWTPQAILCSAALRARQTAEALAAAATWPTP-LTVLEDLYNANAEDMIAVLRKQAVNIDSLLLVAHAPGIGELAGALTTRQSD 387
            M  L+LLRHAEALPA A   D +R+LS HGE++AR  G+WL +    PQ +LCS A R R TA  LA  A   +P L + +++Y+A   +++A+L  Q   + +++LV H PGI  L   L   +SD
Sbjct:    1 MLELILLRHAEALPATAGDDDRQRRLSGHGEQEARAAGRWLASHGARPQRVLCSPAERTRATAN-LALEALGDSPELQLADEIYDATPGELLALL-DQHDEVGTVMLVGHNPGIERLVALLVEGRSD 125          
BLAST of mRNA_P-wetherbeei_contig16099.2.1 vs. uniprot
Match: A0A841CTI0_PLAVE (Phosphohistidine phosphatase n=2 Tax=Planomonospora venezuelensis TaxID=1999 RepID=A0A841CTI0_PLAVE)

HSP 1 Score: 88.6 bits (218), Expect = 3.060e-19
Identity = 56/149 (37.58%), Postives = 85/149 (57.05%), Query Frame = 1
Query:   10 MKSLMLLRHAEALPAAAAVSDLERKLSVHGERQARRLGKWLGARSWTPQAILCSAALRARQTAEALAAAATWPTPLTVLEDLYNANAEDMIAVLRKQAVNIDSLLLVAHAPGIGELAGALTTRQSDLSLACEPATLIEVVAALDDWSEL 456
            M++L++LRHA+A+     ++D ER L+  GER ARR+G+ L A    P  +LCS A+R R+TAE     A    P+    D+Y A A++++A++R+    + +LLLV H PG+ EL   LT    D      P     V+   D+W+EL
Sbjct:    3 MRTLIVLRHAKAVHTPG-LADPERPLTDRGERDARRVGETLAAMGLRPDLVLCSPAVRTRRTAEL----ALPGEPVEFERDIYEAYADELLALVRRADPEVRTLLLVGHNPGVHELVLGLTMHAGDPGF---PPGAFAVIETGDEWAEL 143          
BLAST of mRNA_P-wetherbeei_contig16099.2.1 vs. uniprot
Match: A0A1H6T0J6_9GAMM (Phosphohistidine phosphatase SixA n=1 Tax=Frateuria terrea TaxID=529704 RepID=A0A1H6T0J6_9GAMM)

HSP 1 Score: 88.6 bits (218), Expect = 3.060e-19
Identity = 64/158 (40.51%), Postives = 83/158 (52.53%), Query Frame = 1
Query:   10 MKSLMLLRHAEALPAAAAVSDLERKLSVHGERQARRLGKWLGARSWTPQAILCSAALRARQTAEALAAAATWPTPLTVLEDLYNANAEDMIAVLRKQAVNIDSLLLVAHAPGIGELAGALTTRQSDLSLACEPATLIEVVAALDDWSELGRNSGNLRL 483
            M+ L+LLRHAEALPAA    D  R LS  GE++A   G+WL +    P  +LCS A RAR TA+    A T    + + ED+Y A   +++A+L + A +   +LLV H PGI  L   L   +SD      PA L   V  L D  E     GN RL
Sbjct:    1 MQELILLRHAEALPAATGGDDRSRTLSPRGEQEALAAGRWLASHGARPDRVLCSPAERARHTADLAMRAMTPDASIGLSEDVYEATPGELLALLDQHA-DARCVLLVGHNPGIERLVALLVEGRSDEFRGMPPAGL--AVLHLHDALE----PGNARL 151          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16099.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0Q9QM65_9GAMM6.950e-2139.87Phosphoglycerate mutase n=1 Tax=Frateuria sp. Soil... [more]
UPI00180E0C911.380e-2044.53Histidine phosphatase family protein n=1 Tax=Frate... [more]
A0A171DCK6_9ACTN1.460e-1938.26Phosphohistidine phosphatase n=7 Tax=Streptosporan... [more]
UPI00066FE48D1.540e-1941.91histidine phosphatase family protein n=1 Tax=Frate... [more]
A0A2E1VYA3_9BACT1.870e-1937.87Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A8J3RYX7_PLARO2.060e-1938.26Phosphohistidine phosphatase n=2 Tax=Planobispora ... [more]
A0A160N3X9_9GAMM2.170e-1939.71Uncharacterized protein n=2 Tax=Xanthomonadales Ta... [more]
A0A1E4Q293_9GAMM2.170e-1943.31Phosphoglycerate mutase n=1 Tax=Rhodanobacter sp. ... [more]
A0A841CTI0_PLAVE3.060e-1937.58Phosphohistidine phosphatase n=2 Tax=Planomonospor... [more]
A0A1H6T0J6_9GAMM3.060e-1940.51Phosphohistidine phosphatase SixA n=1 Tax=Frateuri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16099contigP-wetherbeei_contig16099:641..1138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1234364.AMSF01000025_gene3560
PFAMsHis_Phos_1
Model size498
Max annot lvl135614|Xanthomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.45e-20
EggNOG OGsCOG2062@1|root,COG2062@2|Bacteria,1N0FX@1224|Proteobacteria,1S2AY@1236|Gammaproteobacteria,1X61S@135614|Xanthomonadales
Descriptionphosphoglycerate mutase
Cds size489
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.867986-UTR-P-wetherbeei_contig16099:640..6491683186076.867986-UTR-P-wetherbeei_contig16099:640..649Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16099 641..649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.8765812-CDS-P-wetherbeei_contig16099:649..11381683186076.8765812-CDS-P-wetherbeei_contig16099:649..1138Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16099 650..1138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16099.2.1prot_P-wetherbeei_contig16099.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16099 650..1138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16099.2.1

>prot_P-wetherbeei_contig16099.2.1 ID=prot_P-wetherbeei_contig16099.2.1|Name=mRNA_P-wetherbeei_contig16099.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MKSLMLLRHAEALPAAAAVSDLERKLSVHGERQARRLGKWLGARSWTPQA
ILCSAALRARQTAEALAAAATWPTPLTVLEDLYNANAEDMIAVLRKQAVN
IDSLLLVAHAPGIGELAGALTTRQSDLSLACEPATLIEVVAALDDWSELG
RNSGNLRLLLPA*
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mRNA from alignment at P-wetherbeei_contig16099:641..1138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16099.2.1 ID=mRNA_P-wetherbeei_contig16099.2.1|Name=mRNA_P-wetherbeei_contig16099.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig16099:641..1138+ (Phaeothamnion wetherbeei SAG_119_79)
GATTCCGCTATGAAATCCCTCATGCTATTACGACACGCCGAAGCCTTGCC CGCCGCAGCGGCTGTATCGGACCTCGAACGCAAGCTCTCGGTACATGGTG AGCGGCAGGCGCGCAGACTCGGCAAGTGGCTGGGTGCACGCAGCTGGACC CCGCAGGCCATCCTCTGTTCGGCCGCCTTGCGCGCGCGTCAGACCGCTGA AGCGCTCGCTGCCGCGGCCACTTGGCCAACGCCGCTGACAGTGCTTGAGG ATCTCTATAACGCCAACGCCGAAGACATGATCGCCGTGCTGCGCAAGCAG GCAGTGAACATCGACAGCTTACTGCTGGTCGCCCATGCACCCGGCATCGG CGAACTTGCCGGCGCGCTCACGACCCGCCAATCCGATCTGTCGCTCGCCT GCGAGCCGGCAACACTTATCGAAGTGGTCGCGGCACTCGACGACTGGTCC GAACTTGGTCGCAATAGTGGGAATCTGCGCTTACTTCTGCCAGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16099:641..1138+

>mRNA_P-wetherbeei_contig16099.2.1 ID=mRNA_P-wetherbeei_contig16099.2.1|Name=mRNA_P-wetherbeei_contig16099.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig16099:641..1138+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATCCCTCATGCTATTACGACACGCCGAAGCCTTGCCCGCCGCAGC
GGCTGTATCGGACCTCGAACGCAAGCTCTCGGTACATGGTGAGCGGCAGG
CGCGCAGACTCGGCAAGTGGCTGGGTGCACGCAGCTGGACCCCGCAGGCC
ATCCTCTGTTCGGCCGCCTTGCGCGCGCGTCAGACCGCTGAAGCGCTCGC
TGCCGCGGCCACTTGGCCAACGCCGCTGACAGTGCTTGAGGATCTCTATA
ACGCCAACGCCGAAGACATGATCGCCGTGCTGCGCAAGCAGGCAGTGAAC
ATCGACAGCTTACTGCTGGTCGCCCATGCACCCGGCATCGGCGAACTTGC
CGGCGCGCTCACGACCCGCCAATCCGATCTGTCGCTCGCCTGCGAGCCGG
CAACACTTATCGAAGTGGTCGCGGCACTCGACGACTGGTCCGAACTTGGT
CGCAATAGTGGGAATCTGCGCTTACTTCTGCCAGCCTGA
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