mRNA_P-wetherbeei_contig16081.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16081.1.1
Unique NamemRNA_P-wetherbeei_contig16081.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16081.1.1 vs. uniprot
Match: A0A835Z0U3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.170e-21
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 RLAHAELFWRGCLLCVVAAASNPTTVGRWLWDSVPTVRCLMQMTVCSQYEFPP 159
            RLA+A+LFWR CL  +V AA+NP+TVGRW WD VPT+RCLMQM VCSQYEFPP
Sbjct:  897 RLAYADLFWRACLCSLVLAATNPSTVGRWAWDHVPTLRCLMQMVVCSQYEFPP 949
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BLAST of mRNA_P-wetherbeei_contig16081.1.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.750e-14
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    4 LAHAELFWRGCLLCVVAAASNPTTVGRWLWDSVPTVRCLMQMTVCSQYEFPP 159
            LAHA+LFWR  ++ +V AA+NP +VG  LW++ PT+RCLMQM VC+ + FPP
Sbjct: 1173 LAHADLFWRAAVVALVLAATNPASVGHELWETSPTMRCLMQMLVCTDFRFPP 1224
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BLAST of mRNA_P-wetherbeei_contig16081.1.1 vs. uniprot
Match: A0A7R9YAR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAR8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.130e-11
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 LAHAELFWRGCLLCVVAAASNPTTVGRWLWDSVPTVRCLMQMTVCSQYEFPP 159
            LA A++FW+ C++ V  AA  P +VG  LW+ +PT RCLMQM+VCS + FPP
Sbjct:  280 LALAQVFWKSCMVLVALAAWAPRSVGLKLWNEMPTFRCLMQMSVCSTFSFPP 331
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BLAST of mRNA_P-wetherbeei_contig16081.1.1 vs. uniprot
Match: A0A6G0XZ52_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XZ52_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.340e-9
Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   10 HAELFWRGCLLCVVAAASNPTTVGRWLWDSVPTVRCLMQMTVCSQYEFPP 159
            +AEL+W  C + ++  + NP+T+G  +W+S+PT+R LMQM +  +Y FPP
Sbjct:  740 YAELYWLSCCVLLILVSFNPSTLGASVWESIPTMRSLMQMAITGRYTFPP 789
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BLAST of mRNA_P-wetherbeei_contig16081.1.1 vs. uniprot
Match: A0A7I4D9I5_PHYPA (Uncharacterized protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4D9I5_PHYPA)

HSP 1 Score: 49.7 bits (117), Expect = 1.610e-5
Identity = 15/46 (32.61%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   16 ELFWRGCLLCVVAAASNPTTVGRWLWDSVPTVRCLMQMTVCSQYEF 153
            +++W+ CL+ ++ A  N TT+G ++W+S+P++R LM++ +     F
Sbjct:  816 DMYWKACLVVLIVAVFNLTTIGNFVWESIPSLRSLMEVLIAGDKAF 861
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16081.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z0U3_9STRA1.170e-2175.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L4I3_9PHAE1.750e-1457.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9YAR8_9STRA1.130e-1153.85Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6G0XZ52_9STRA1.340e-944.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7I4D9I5_PHYPA1.610e-532.61Uncharacterized protein n=4 Tax=Physcomitrium pate... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16081contigP-wetherbeei_contig16081:674..832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10228.TriadP60509
Preferred nameINTS1
PFAMsDUF3677
Model size159
Max annot lvl33208|Metazoa
KEGG koko:K13138
Hectar predicted targeting categorysignal peptide
GOsGO:0000428,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010466,GO:0010467,GO:0010605,GO:0010941,GO:0010951,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0030162,GO:0030880,GO:0031123,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032039,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034474,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040007,GO:0042795,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043628,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045861,GO:0046483,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2000117
Exons1
Evalue1.48e-12
EggNOG OGsKOG4596@1|root,KOG4596@2759|Eukaryota,38CPI@33154|Opisthokonta,3BGWJ@33208|Metazoa
DescriptionU2 snRNA 3'-end processing
Cds size159
COG categoryO
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.4221287-CDS-P-wetherbeei_contig16081:673..8321683186076.4221287-CDS-P-wetherbeei_contig16081:673..832Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16081 674..832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16081.1.1prot_P-wetherbeei_contig16081.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16081 674..832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16081.1.1

>prot_P-wetherbeei_contig16081.1.1 ID=prot_P-wetherbeei_contig16081.1.1|Name=mRNA_P-wetherbeei_contig16081.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
RLAHAELFWRGCLLCVVAAASNPTTVGRWLWDSVPTVRCLMQMTVCSQYE
FPP
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mRNA from alignment at P-wetherbeei_contig16081:674..832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16081.1.1 ID=mRNA_P-wetherbeei_contig16081.1.1|Name=mRNA_P-wetherbeei_contig16081.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig16081:674..832+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGGCGCACGCGGAGCTGTTCTGGCGCGGCTGCCTGCTGTGTGTGGT
GGCGGCGGCCTCCAATCCGACCACGGTCGGCCGGTGGCTCTGGGACTCGG
TGCCCACGGTGCGATGCCTCATGCAAATGACCGTCTGCTCGCAGTACGAG
TTCCCTCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16081:674..832+

>mRNA_P-wetherbeei_contig16081.1.1 ID=mRNA_P-wetherbeei_contig16081.1.1|Name=mRNA_P-wetherbeei_contig16081.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig16081:674..832+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGGCGCACGCGGAGCTGTTCTGGCGCGGCTGCCTGCTGTGTGTGGT
GGCGGCGGCCTCCAATCCGACCACGGTCGGCCGGTGGCTCTGGGACTCGG
TGCCCACGGTGCGATGCCTCATGCAAATGACCGTCTGCTCGCAGTACGAG
TTCCCTCCG
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