mRNA_P-wetherbeei_contig16070.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16070.1.1
Unique NamemRNA_P-wetherbeei_contig16070.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16070.1.1 vs. uniprot
Match: A0A6H5L7N0_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N0_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.460e-46
Identity = 80/149 (53.69%), Postives = 103/149 (69.13%), Query Frame = 1
Query:   10 GAAIEKATSEMQIGPDWGANMQICDMINHRSDGVQSGVKALKRRLKNDNPKVVTLALLLCEACVKNCGFPLHAAV-EQSLLADVAGLTDGRRGWEVREKALALIQQWAAAFQGDRALGGFTETYSFLRRKGIQFPQGVQSAPV-FTPPA 450
            G+ IEKATSE  +  DW  NMQICD INH+ DG     KALKRRLK+DNPK++ L L LCE  +KNC  PLH A+  +  LA+VAGL +G++G+EVR +AL LIQ W  AFQ DR+L  ++ETY  L+ +G +FP+   +A   FTP A
Sbjct:   19 GSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGAREFLAEVAGLCNGQKGYEVRSRALGLIQDWGIAFQSDRSLA-YSETYGRLKAQGARFPEATDAATTAFTPAA 166          
BLAST of mRNA_P-wetherbeei_contig16070.1.1 vs. uniprot
Match: D7G5B8_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B8_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 4.410e-44
Identity = 80/149 (53.69%), Postives = 103/149 (69.13%), Query Frame = 1
Query:   10 GAAIEKATSEMQIGPDWGANMQICDMINHRSDGVQSGVKALKRRLKNDNPKVVTLALLLCEACVKNCGFPLHAAV-EQSLLADVAGLTDGRRGWEVREKALALIQQWAAAFQGDRALGGFTETYSFLRRKGIQFPQGVQSAPV-FTPPA 450
            G+ IEKATSE  +  DW  NMQICD INH+ DG     KALKRRLK+DNPK++ L L LCE  +KNC  PLH A+  +  LA+VAGL +G++G+EVR +AL LIQ W  AFQ DR+L  ++ETY  L+ +G +FP+   +A   FTP A
Sbjct:   19 GSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILGLTLTLCETTMKNCSRPLHRALGAREFLAEVAGLCNGQKGYEVRSRALGLIQDWGIAFQSDRSLA-YSETYGRLKAQGARFPEATDAATTAFTPAA 166          
BLAST of mRNA_P-wetherbeei_contig16070.1.1 vs. uniprot
Match: A0A7S2GD13_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GD13_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.180e-41
Identity = 78/157 (49.68%), Postives = 104/157 (66.24%), Query Frame = 1
Query:    1 SPTGAAIEKATSEMQIGPDWGANMQICDMINHRSDGVQSGVKALKRRLKNDNPKVVTLALLLCEACVKNCGFPLHAAV-EQSLLADVAGLTDGRRGWEVREKALALIQQWAAAFQGDRA--LGGFTETYSFLRRKGIQFPQGVQSAPVFT--PPATR 456
            SP   AI KAT  M +  DW AN++ICD+IN   DG  +  + L+RRLKNDN +V+TL L L +AC+KNC   +H+AV  +  + DV  LTDG++GWEVRE+AL LIQ WA  F+ DR+     FTETY  L+ KG+ FP    +APVF   PP+++
Sbjct:    6 SPISDAISKATDSMLMNTDWSANLEICDLINSSPDGSVTASQTLRRRLKNDNMRVLTLTLELTDACIKNCSSDMHSAVASKEFMGDVVALTDGKQGWEVREQALKLIQAWAIEFK-DRSGPFVVFTETYVQLKTKGVTFPDPEHTAPVFMEEPPSSQ 161          
BLAST of mRNA_P-wetherbeei_contig16070.1.1 vs. uniprot
Match: A0A4D9D0H1_9STRA (VHS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0H1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.610e-35
Identity = 70/162 (43.21%), Postives = 98/162 (60.49%), Query Frame = 1
Query:    1 SPTGAAIEKATSEMQIGPDWGANMQICDMINHRSDGV-QSGVKALKRRLKNDNPKVVTLALLLCEACVKNCGFP-----LHAAV-EQSLLADVAGLTDGRRGWEVREKALALIQQWAAAFQGDRALGGFTETYSFLRRKGIQFPQGVQSAPVFTPPATRVPA 465
            +P G  I+ ATSE  + PDW  N+ +CD +N   +   +  ++A +R+L+  NPKV+ L L L E  +KN   P      HA V     LA ++ LTDG+RGWEV+E+ALAL+QQW  +F+  R    F  TY  LR +G+QFP+   S+P+FTPPA   PA
Sbjct:   18 TPVGRLIDDATSETLVTPDWSLNLAVCDAVNSDDEFAGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQPSPA 179          
BLAST of mRNA_P-wetherbeei_contig16070.1.1 vs. uniprot
Match: A0A1Y1HLQ6_KLENI (VHS and GAT domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HLQ6_KLENI)

HSP 1 Score: 127 bits (319), Expect = 3.120e-31
Identity = 68/151 (45.03%), Postives = 93/151 (61.59%), Query Frame = 1
Query:   19 IEKATSEMQIGPDWGANMQICDMINHRSDGVQSGVKALKRRLKNDNPKVVTLALLLCEACVKNCGFPLHAAVEQS--LLADVAGLTDGRRGWEVREKALALIQQWAAAFQGDRA-LGGFTETYSFLRRKGIQFPQGVQS--APVFTPPATR 456
            +EKATS++ +GPDWG NM +CD IN   +G +  VKA+++RL + NPKV  LAL + E+C+KNCG   HA V  S  LL ++  +   +  + VR+K L L+  W  +F G R     F + Y  +RRKGI FP       APVFTPPAT+
Sbjct:   13 VEKATSDLLLGPDWGMNMDLCDHINRDPEGGKDVVKAVRKRLHSKNPKVQLLALTVLESCIKNCGEGFHANVAHSKELLPEMVKIVTKKSDYAVRDKILQLLDVWQESFGGARGRYPQFYDAYDQVRRKGIMFPNRDMEHMAPVFTPPATQ 163          
BLAST of mRNA_P-wetherbeei_contig16070.1.1 vs. uniprot
Match: UPI001C4F1992 (TOM1-like protein 9 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F1992)

HSP 1 Score: 120 bits (301), Expect = 6.190e-31
Identity = 65/149 (43.62%), Postives = 90/149 (60.40%), Query Frame = 1
Query:   19 IEKATSEMQIGPDWGANMQICDMINHRSDGVQSGVKALKRRLKNDNPKVVTLALLLCEACVKNCGFPLHAAV-EQSLLADVAGLTDGRRGWEVREKALALIQQWAAAFQGDRA-LGGFTETYSFLRRKGIQFPQ-GVQSAPVFTPPATR 456
            +E+ATS+M IGPDW  N++ICD++NH     +  VK +K+RL + NPKV  LAL L E  +KNCG  +H  V E+ +L ++  +   +  + V+EK L LI  W  AF G RA    +   Y  L R G  FPQ   +SAP+FTPP T+
Sbjct:    6 VERATSDMLIGPDWAMNIEICDILNHDPGQAKDVVKGIKKRLGSKNPKVQLLALTLLETVIKNCGDIVHMHVAERDILHEMVKIVKKKPDFHVKEKILTLIDTWQEAFGGPRARYSQYYAAYQELLRAGAVFPQRSERSAPIFTPPQTQ 154          
BLAST of mRNA_P-wetherbeei_contig16070.1.1 vs. uniprot
Match: A0A2I0JXW7_PUNGR (VHS domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JXW7_PUNGR)

HSP 1 Score: 117 bits (294), Expect = 2.250e-30
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = 1
Query:   19 IEKATSEMQIGPDWGANMQICDMINHRSDGVQSGVKALKRRLKNDNPKVVTLALLLCEACVKNCGFPLHAAV-EQSLLADVAGLTDGRRGWEVREKALALIQQWAAAFQGDRA-LGGFTETYSFLRRKGIQFPQGVQ-SAPVFTPPATR 456
            +E+ATS+M IGPDW  N++ICDM+N      +  VK +K+RL + NPKV  LAL L E  +KNCG  +H  V E+ +L ++  +   +  + V+EK L LI  W  AF G RA    +   Y  L R G  FPQ  + SAPVFTPP T+
Sbjct:    6 VERATSDMLIGPDWAMNIEICDMLNRDPGQAKDVVKGIKKRLGSKNPKVQLLALTLLETIIKNCGDIVHMHVAERDVLHEMVKIARKKPDFHVKEKILILIDTWQEAFGGPRARYPQYFAAYQELLRAGAVFPQRAEGSAPVFTPPQTQ 154          
BLAST of mRNA_P-wetherbeei_contig16070.1.1 vs. uniprot
Match: K7M6Q8_SOYBN (VHS domain-containing protein n=1 Tax=Glycine max TaxID=3847 RepID=K7M6Q8_SOYBN)

HSP 1 Score: 118 bits (296), Expect = 2.330e-30
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = 1
Query:   19 IEKATSEMQIGPDWGANMQICDMINHRSDGVQSGVKALKRRLKNDNPKVVTLALLLCEACVKNCGFPLHAAV-EQSLLADVAGLTDGRRGWEVREKALALIQQWAAAFQGDRA-LGGFTETYSFLRRKGIQFPQ-GVQSAPVFTPPATR 456
            +E+ATS+M IGPDW  N++ICDM+NH     +  VK +K+R+ + N KV  LAL L E  +KNCG  +H  V E+ +L ++  +   +  + V+EK L LI  W  AF G RA    +   Y  L R G  FPQ   QSAPVFTPP T+
Sbjct:    6 VERATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSKNSKVQLLALTLLETIIKNCGDIVHMHVAERDVLHEMVKIVKKKPDFHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSEQSAPVFTPPQTQ 154          
BLAST of mRNA_P-wetherbeei_contig16070.1.1 vs. uniprot
Match: UPI000B8CF7AC (LOW QUALITY PROTEIN: TOM1-like protein 6 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF7AC)

HSP 1 Score: 124 bits (310), Expect = 3.070e-30
Identity = 65/150 (43.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:   16 AIEKATSEMQIGPDWGANMQICDMINHRSDGVQSGVKALKRRLKNDNPKVVTLALLLCEACVKNCGFPLH-AAVEQSLLADVAGLTDGRRGWEVREKALALIQQWAAAFQGDRALGGFTETYSF---LRRKGIQFPQGVQSAPVFTPPAT 453
            A+EKATS++ I PDW  N+ ICD +N      +  VKA+KRRL+N N +V  LAL L E  VKNCG  +H   VE+++L ++  +   +   +VR+K L ++  W  AF G R  G + + YS    LRR G++FPQ + ++P+FTPPAT
Sbjct:   11 AVEKATSDLLIAPDWTMNIDICDSVNSNHWQAKDVVKAVKRRLQNKNARVQLLALTLLETMVKNCGDYVHFQIVEKNILGEMVKIVRKKADMQVRDKVLMMLDSWQEAFGGPR--GKYPQYYSAYDELRRSGVEFPQRLDASPIFTPPAT 158          
BLAST of mRNA_P-wetherbeei_contig16070.1.1 vs. uniprot
Match: A0A822YSS5_NELNU (VHS domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822YSS5_NELNU)

HSP 1 Score: 118 bits (295), Expect = 3.210e-30
Identity = 64/149 (42.95%), Postives = 89/149 (59.73%), Query Frame = 1
Query:   19 IEKATSEMQIGPDWGANMQICDMINHRSDGVQSGVKALKRRLKNDNPKVVTLALLLCEACVKNCGFPLHAAV-EQSLLADVAGLTDGRRGWEVREKALALIQQWAAAFQGDRA-LGGFTETYSFLRRKGIQFPQ-GVQSAPVFTPPATR 456
            +E+ATS+M IGPDW  N++ICD++NH     +  VK LK+RL + NPKV  LAL L E  +KNCG  +H  V E+ +L ++  +   +  + V+EK L LI  W   F G RA    +   Y  L R G  FP+   +SAP+FTPP T+
Sbjct:    6 VERATSDMLIGPDWAMNIEICDILNHDPGQAKDVVKGLKKRLGSKNPKVQLLALTLLETLIKNCGDIVHMHVAEKDILHEMVKIVKKKPDFHVKEKILTLIDTWQETFGGPRARYSQYYAAYQELLRAGAVFPRRSERSAPIFTPPQTQ 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16070.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7N0_9PHAE2.460e-4653.69VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G5B8_ECTSI4.410e-4453.69VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2GD13_9STRA2.180e-4149.68Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A4D9D0H1_9STRA4.610e-3543.21VHS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A1Y1HLQ6_KLENI3.120e-3145.03VHS and GAT domain containing protein n=1 Tax=Kleb... [more]
UPI001C4F19926.190e-3143.62TOM1-like protein 9 n=1 Tax=Macadamia integrifolia... [more]
A0A2I0JXW7_PUNGR2.250e-3044.30VHS domain-containing protein n=1 Tax=Punica grana... [more]
K7M6Q8_SOYBN2.330e-3044.30VHS domain-containing protein n=1 Tax=Glycine max ... [more]
UPI000B8CF7AC3.070e-3043.33LOW QUALITY PROTEIN: TOM1-like protein 6 n=1 Tax=C... [more]
A0A822YSS5_NELNU3.210e-3042.95VHS domain-containing protein n=1 Tax=Nelumbo nuci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16070contigP-wetherbeei_contig16070:2..652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5B8
Preferred nameGGA2
PFAMsAlpha_adaptinC2,GAT,VHS
Model size465
Max annot lvl2759|Eukaryota
KEGG koko:K12346,ko:K12404,ko:K20524
KEGG TC2.A.55.1
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005938,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0015031,GO:0015629,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019538,GO:0019941,GO:0030029,GO:0030036,GO:0030163,GO:0030479,GO:0030863,GO:0030864,GO:0031984,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042886,GO:0043130,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043328,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0061645,GO:0070273,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097435,GO:0098657,GO:0098791,GO:0099568,GO:1901564,GO:1901565,GO:1901575,GO:1901981
Exons2
Evalue7.23e-45
EggNOG OGsKOG1087@1|root,KOG1087@2759|Eukaryota
Descriptionintracellular protein transport
Cds size465
COG categoryL
BRITEko00000,ko00001,ko02000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.2135482-CDS-P-wetherbeei_contig16070:1..3911683186076.2135482-CDS-P-wetherbeei_contig16070:1..391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16070 2..391 -
1683186076.2224402-CDS-P-wetherbeei_contig16070:577..6521683186076.2224402-CDS-P-wetherbeei_contig16070:577..652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16070 578..652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16070.1.1prot_P-wetherbeei_contig16070.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16070 2..652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16070.1.1

>prot_P-wetherbeei_contig16070.1.1 ID=prot_P-wetherbeei_contig16070.1.1|Name=mRNA_P-wetherbeei_contig16070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
SPTGAAIEKATSEMQIGPDWGANMQICDMINHRSDGVQSGVKALKRRLKN
DNPKVVTLALLLCEACVKNCGFPLHAAVEQSLLADVAGLTDGRRGWEVRE
KALALIQQWAAAFQGDRALGGFTETYSFLRRKGIQFPQGVQSAPVFTPPA
TRVPA
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mRNA from alignment at P-wetherbeei_contig16070:2..652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16070.1.1 ID=mRNA_P-wetherbeei_contig16070.1.1|Name=mRNA_P-wetherbeei_contig16070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=651bp|location=Sequence derived from alignment at P-wetherbeei_contig16070:2..652- (Phaeothamnion wetherbeei SAG_119_79)
TCCCCAACAGGCGCGGCAATCGAGAAAGCAACGAGTGAAATGCAGATAGG ACCGGACTGGGGAGCGAACATGCAGGTAACCCCGTCTCTCCTCTTTTATG CGCTCCCCGCTTTCAGATGTGTTGCGATTCCTAGTGAGAGAAATCGTTTT CCTTTTTATTCGAGCTGTTGCATCGCTCTGATTTTCTCCGCTTCTTGTCC TTAACGAACTTCTCTTTCCTCCCCGATCCATTCCCTCCATTCCTGCGGCG GAGCAAAGCAGATTTGCGACATGATCAACCACAGGAGCGACGGCGTCCAG AGCGGTGTCAAGGCCCTGAAACGGCGCCTCAAGAACGATAACCCAAAGGT GGTCACGCTGGCGCTGCTCCTCTGCGAGGCGTGCGTCAAAAACTGCGGCT TCCCGCTGCACGCCGCCGTCGAGCAGAGCCTTTTGGCCGACGTGGCGGGC CTCACCGACGGCCGCCGCGGCTGGGAGGTCCGCGAGAAGGCACTCGCACT CATCCAGCAGTGGGCGGCGGCCTTCCAGGGCGACCGCGCGCTCGGTGGCT TCACCGAGACGTATTCCTTCCTGCGCAGGAAGGGGATCCAGTTCCCGCAG GGGGTGCAGTCGGCGCCCGTCTTTACGCCGCCGGCCACCCGCGTGCCGGC A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16070:2..652-

>mRNA_P-wetherbeei_contig16070.1.1 ID=mRNA_P-wetherbeei_contig16070.1.1|Name=mRNA_P-wetherbeei_contig16070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig16070:2..652- (Phaeothamnion wetherbeei SAG_119_79)
TCCCCAACAGGCGCGGCAATCGAGAAAGCAACGAGTGAAATGCAGATAGG
ACCGGACTGGGGAGCGAACATGCAGATTTGCGACATGATCAACCACAGGA
GCGACGGCGTCCAGAGCGGTGTCAAGGCCCTGAAACGGCGCCTCAAGAAC
GATAACCCAAAGGTGGTCACGCTGGCGCTGCTCCTCTGCGAGGCGTGCGT
CAAAAACTGCGGCTTCCCGCTGCACGCCGCCGTCGAGCAGAGCCTTTTGG
CCGACGTGGCGGGCCTCACCGACGGCCGCCGCGGCTGGGAGGTCCGCGAG
AAGGCACTCGCACTCATCCAGCAGTGGGCGGCGGCCTTCCAGGGCGACCG
CGCGCTCGGTGGCTTCACCGAGACGTATTCCTTCCTGCGCAGGAAGGGGA
TCCAGTTCCCGCAGGGGGTGCAGTCGGCGCCCGTCTTTACGCCGCCGGCC
ACCCGCGTGCCGGCA
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