mRNA_P-wetherbeei_contig1607.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1607.3.1
Unique NamemRNA_P-wetherbeei_contig1607.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1607.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1607contigP-wetherbeei_contig1607:520..2282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1544
Hectar predicted targeting categoryother localisation
Exons2
Cds size789
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.0637515-UTR-P-wetherbeei_contig1607:519..7301683186076.0637515-UTR-P-wetherbeei_contig1607:519..730Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1607 520..730 +
1683186076.0918152-UTR-P-wetherbeei_contig1607:1738..22821683186076.0918152-UTR-P-wetherbeei_contig1607:1738..2282Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1607 1739..2282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.0746658-CDS-P-wetherbeei_contig1607:730..14471683186076.0746658-CDS-P-wetherbeei_contig1607:730..1447Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1607 731..1447 +
1683186076.082945-CDS-P-wetherbeei_contig1607:1666..17381683186076.082945-CDS-P-wetherbeei_contig1607:1666..1738Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1607 1667..1738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1607.3.1prot_P-wetherbeei_contig1607.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1607 731..1738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1607.3.1

>prot_P-wetherbeei_contig1607.3.1 ID=prot_P-wetherbeei_contig1607.3.1|Name=mRNA_P-wetherbeei_contig1607.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=263bp
MRLSELETAALRLCLGREDDGVRAALEVFKATKDEADLADTLRRIVRITV
SQAAADVAQRAAADADAGGDGEDGGSGDGGEDGEEKDDEIEVVYVGRSAS
AGGEGGGDDGDGDGGSSGETINMVLVTGCGCDQKGTFPAAASASETEHMN
GHAAAAPAVVPAVAVATAAAALPTAAAGAENDDDDTDDPGIFLAEESRAP
LFQQLLGMACEAGVLKAGQAARLSAMYDGKNVVLMAALDAYGRQKDMSEL
IDTLTRLVNAAE*
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mRNA from alignment at P-wetherbeei_contig1607:520..2282+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1607.3.1 ID=mRNA_P-wetherbeei_contig1607.3.1|Name=mRNA_P-wetherbeei_contig1607.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1763bp|location=Sequence derived from alignment at P-wetherbeei_contig1607:520..2282+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCAGCGGTGGCGCGGTGAATGGCGGTGGCGGCAGCTGCGGCGGCGTGG
GGGGCGTAGGCGGCGGCGGGGGCAGCGAGGACGAAGAGGAGGAGAAGGAG
GAGGAGGAAGAGGTTGACGACGACGACGACGATGAAGCGGCGGGCGAGCG
GGGGACGCGGGCGGACAGCCTCCGGGACGTGGAGGGCCATTTCCTGCGCA
TTATCCGCGAGATGAGGCTGTCGGAGCTCGAGACGGCGGCGCTGCGGTTG
TGCCTCGGCCGGGAGGACGACGGCGTCCGGGCGGCGCTCGAGGTCTTCAA
GGCGACGAAGGACGAGGCCGACCTGGCCGACACACTCCGCCGCATCGTCC
GCATCACCGTCAGCCAGGCTGCCGCCGACGTGGCGCAGCGGGCGGCGGCC
GACGCTGACGCCGGTGGGGACGGCGAGGATGGCGGCAGCGGTGACGGCGG
CGAGGACGGCGAGGAGAAAGATGACGAGATTGAAGTGGTCTACGTTGGGC
GGAGCGCATCGGCGGGCGGCGAGGGCGGCGGGGATGACGGCGACGGGGAT
GGCGGCAGCTCTGGGGAGACGATAAACATGGTCCTCGTCACCGGATGCGG
GTGCGACCAGAAGGGCACATTCCCTGCCGCTGCCAGCGCATCGGAAACCG
AACACATGAACGGCCACGCTGCCGCCGCTCCCGCTGTCGTTCCAGCCGTT
GCCGTTGCCACCGCCGCCGCCGCTCTCCCTACTGCCGCCGCCGGCGCTGA
AAATGATGACGACGACACGGACGACCCGGGTATCTTCCTGGCGGAGGAGA
GCCGTGCGCCGCTCTTCCAGCAGCTGCTGGGGATGGCGTGCGAGGCAGGT
GTGCTGAAGGCCGGGCAGGCGGCGCGGCTGTCGGCGATGTACGACGGCAA
GAACGTCGTCCTGATGGCGGCGCTTGACGTGAGTGTTCCGTCTTTGCTTT
TGTTTCTTTCTTTGTTTCCCTTTTTTCGGGGTTTGGGTGGTGCAATTCTT
CCCGCGGGATGGACGATCATTGTATCTACGTATGTGGGGTTGTGTATGTT
TTGCGGCCTTCTCTCTCCTCTTTACTGATGCATGGTTTTCCGCTGTTCAT
CAACTTCTTACCTTTCCTTCGCTGTGCGGTCGGTGTGTGTGTTGCAGGCA
TACGGGCGACAGAAGGACATGAGCGAGCTCATCGACACGCTGACCCGCCT
CGTCAACGCCGCAGAATGAGACAGTTCTGTCGTGGCGATGCCGTCACCGC
CACTGCCGCCGCTGCCGCCGCGGCTGCCTTGCTGCAGCGGTGGAGGGGCA
GGAGCAGGCGCAGCGCGGCACCGGCCGCGCCGCGCCCGGCTCTGCCTGTG
CGGCGGTTTCGAGGCTCTTTCCGGCGGCGTGGGAGAGGCGCTAGGCGTTT
GCTGAAGCACAGGCAATTTGAGGTGCGCAAGGCACATGGCCGATAGGACC
GGACGTCGGATGGTAACCGAAAGCCGTCGTTTCTCATCGTAGGTGTGTGG
CTCGGAGCTTCGGCCGGCAGGCCAGTTAGATTTCACGCAGGTCGGCCAGA
GGACGATGAGAGGGAAGGCCAGAGAGGGAAAAATCGACTTGTGTACACTG
ATTGGTGAAAATTGGGGCAGCTGGTCGCGTCAGGCGAGATGCAACGGGGA
GAGGCAGCGACAGCGGCGGTTGCCCTGCCATAGCCAAGCTCAGCACGCGA
AGAGAGGTAAAAATTCTGGTCCCCTGATCTTATCATAGCTAGATAACTAT
TTTTGTACACGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1607:520..2282+

>mRNA_P-wetherbeei_contig1607.3.1 ID=mRNA_P-wetherbeei_contig1607.3.1|Name=mRNA_P-wetherbeei_contig1607.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig1607:520..2282+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGCTGTCGGAGCTCGAGACGGCGGCGCTGCGGTTGTGCCTCGGCCG
GGAGGACGACGGCGTCCGGGCGGCGCTCGAGGTCTTCAAGGCGACGAAGG
ACGAGGCCGACCTGGCCGACACACTCCGCCGCATCGTCCGCATCACCGTC
AGCCAGGCTGCCGCCGACGTGGCGCAGCGGGCGGCGGCCGACGCTGACGC
CGGTGGGGACGGCGAGGATGGCGGCAGCGGTGACGGCGGCGAGGACGGCG
AGGAGAAAGATGACGAGATTGAAGTGGTCTACGTTGGGCGGAGCGCATCG
GCGGGCGGCGAGGGCGGCGGGGATGACGGCGACGGGGATGGCGGCAGCTC
TGGGGAGACGATAAACATGGTCCTCGTCACCGGATGCGGGTGCGACCAGA
AGGGCACATTCCCTGCCGCTGCCAGCGCATCGGAAACCGAACACATGAAC
GGCCACGCTGCCGCCGCTCCCGCTGTCGTTCCAGCCGTTGCCGTTGCCAC
CGCCGCCGCCGCTCTCCCTACTGCCGCCGCCGGCGCTGAAAATGATGACG
ACGACACGGACGACCCGGGTATCTTCCTGGCGGAGGAGAGCCGTGCGCCG
CTCTTCCAGCAGCTGCTGGGGATGGCGTGCGAGGCAGGTGTGCTGAAGGC
CGGGCAGGCGGCGCGGCTGTCGGCGATGTACGACGGCAAGAACGTCGTCC
TGATGGCGGCGCTTGACGCATACGGGCGACAGAAGGACATGAGCGAGCTC
ATCGACACGCTGACCCGCCTCGTCAACGCCGCAGAATGA
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