mRNA_P-wetherbeei_contig16069.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16069.1.1
Unique NamemRNA_P-wetherbeei_contig16069.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16069.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16069contigP-wetherbeei_contig16069:813..1064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog77586.LPERR12G07920.1
PFAMsCoilin_N
Model size252
Max annot lvl35493|Streptophyta
KEGG koko:K13150
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0017069,GO:0030619,GO:0030620,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Exons1
Evalue8.47e-08
EggNOG OGs2CND1@1|root,2QVBB@2759|Eukaryota,37KDR@33090|Viridiplantae,3G93U@35493|Streptophyta,3KMPB@4447|Liliopsida,3IDIA@38820|Poales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_003890.1
Descriptionisoform X1
Cds size252
COG categoryS
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186076.0212312-CDS-P-wetherbeei_contig16069:812..10641683186076.0212312-CDS-P-wetherbeei_contig16069:812..1064Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16069 813..1064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16069.1.1prot_P-wetherbeei_contig16069.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16069 813..1064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16069.1.1

>prot_P-wetherbeei_contig16069.1.1 ID=prot_P-wetherbeei_contig16069.1.1|Name=mRNA_P-wetherbeei_contig16069.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
TPAPQRIRLHFGNGCVPKEEPDLVKRWLIVPANLKTVSDLHRYLQAHIKS
LGKERRLVLSVSRFALPPSEALAVVRDGDMVHVE
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mRNA from alignment at P-wetherbeei_contig16069:813..1064+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16069.1.1 ID=mRNA_P-wetherbeei_contig16069.1.1|Name=mRNA_P-wetherbeei_contig16069.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig16069:813..1064+ (Phaeothamnion wetherbeei SAG_119_79)
ACTCCGGCACCGCAACGCATACGACTTCATTTCGGCAACGGCTGCGTTCC
GAAGGAGGAACCGGACCTCGTGAAGCGCTGGCTGATAGTGCCTGCAAACC
TGAAGACCGTAAGCGACCTCCACCGATACCTCCAAGCTCACATCAAGTCT
CTTGGGAAGGAAAGGCGGCTGGTTCTTTCCGTCAGCCGGTTCGCCTTGCC
CCCTTCGGAGGCGCTGGCCGTGGTCCGCGACGGCGACATGGTTCATGTCG
AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16069:813..1064+

>mRNA_P-wetherbeei_contig16069.1.1 ID=mRNA_P-wetherbeei_contig16069.1.1|Name=mRNA_P-wetherbeei_contig16069.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig16069:813..1064+ (Phaeothamnion wetherbeei SAG_119_79)
ACTCCGGCACCGCAACGCATACGACTTCATTTCGGCAACGGCTGCGTTCC
GAAGGAGGAACCGGACCTCGTGAAGCGCTGGCTGATAGTGCCTGCAAACC
TGAAGACCGTAAGCGACCTCCACCGATACCTCCAAGCTCACATCAAGTCT
CTTGGGAAGGAAAGGCGGCTGGTTCTTTCCGTCAGCCGGTTCGCCTTGCC
CCCTTCGGAGGCGCTGGCCGTGGTCCGCGACGGCGACATGGTTCATGTCG
AG
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