mRNA_P-wetherbeei_contig16057.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16057.2.1
Unique NamemRNA_P-wetherbeei_contig16057.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16057.2.1 vs. uniprot
Match: A0A2V7GN54_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7GN54_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 3.650e-18
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   13 KTTILNRRNFLLAVGAGGAATVAAIGAKAGLQAQPKVSGSGKRDTRGYAASEHINNYYRTTKV 201
            +T  L+RRNFLL VG GGAAT AAI AK   Q+ P++SG GKR TRGY ASEH+NNYYRTTKV
Sbjct:    4 RTKRLSRRNFLLTVGVGGAATAAAIVAKNVAQS-PQLSGQGKRATRGYHASEHVNNYYRTTKV 65          
BLAST of mRNA_P-wetherbeei_contig16057.2.1 vs. uniprot
Match: A0A1F4CC57_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 TaxID=1797499 RepID=A0A1F4CC57_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 3.240e-17
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1
Query:   19 TILNRRNFLLAVGAGGAATVAAIGAKA--GLQAQPKVSGSGKRDTRGYAASEHINNYYRTTKV 201
            T L+RRNFLLAVGAGGAA+ AAI AK    ++ QP V+G GK+ TRGY ASEHI NYYRT KV
Sbjct:    6 TKLSRRNFLLAVGAGGAASAAAIVAKTVPQVEPQPAVTGEGKKKTRGYHASEHIRNYYRTAKV 68          
BLAST of mRNA_P-wetherbeei_contig16057.2.1 vs. uniprot
Match: A0A1F4C4A8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b TaxID=1797496 RepID=A0A1F4C4A8_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 1.780e-16
Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   19 TILNRRNFLLAVGAGGAATVAAIGAKAGLQAQPKVSGSGKRDTRGYAASEHINNYYRTTKV 201
            T L+RRNFLLA+GAGGAA+ AAI A    QAQP  +   K+ TRGY ASEHI NYYRTTKV
Sbjct:    6 TKLSRRNFLLALGAGGAASAAAIVANTVPQAQPAATPDDKKKTRGYQASEHIRNYYRTTKV 66          
BLAST of mRNA_P-wetherbeei_contig16057.2.1 vs. uniprot
Match: A0A1F4F3V0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F3V0_9PROT)

HSP 1 Score: 72.4 bits (176), Expect = 2.020e-15
Identity = 42/59 (71.19%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   25 LNRRNFLLAVGAGGAATVAAIGAKAGLQAQPKVSGSGKRDTRGYAASEHINNYYRTTKV 201
            L+RRNFLL VGAGGAAT AAI AK    AQ   SG+ KR TRGY A+EH NNYYRTTKV
Sbjct:    8 LSRRNFLLTVGAGGAATAAAIVAKNSGPAQSP-SGNNKRATRGYHATEHTNNYYRTTKV 65          
BLAST of mRNA_P-wetherbeei_contig16057.2.1 vs. uniprot
Match: A0A521YMV4_9PROT (Twin-arginine translocation signal domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YMV4_9PROT)

HSP 1 Score: 71.6 bits (174), Expect = 4.080e-15
Identity = 42/63 (66.67%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   13 KTTILNRRNFLLAVGAGGAATVAAIGAKAGLQAQPKVSGSGKRDTRGYAASEHINNYYRTTKV 201
            +T  L+RRNFLL VGAGGAAT AAI AK      P  S + KR TRGY ASEHINNYYRT KV
Sbjct:    4 RTKRLSRRNFLLTVGAGGAATAAAIVAKNSAPT-PSPSKNDKRGTRGYEASEHINNYYRTAKV 65          
BLAST of mRNA_P-wetherbeei_contig16057.2.1 vs. uniprot
Match: A0A1F3YST7_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3YST7_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 8.030e-15
Identity = 41/63 (65.08%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   13 KTTILNRRNFLLAVGAGGAATVAAIGAKAGLQAQPKVSGSGKRDTRGYAASEHINNYYRTTKV 201
            K  +L+RRNFLL VGAGGAAT AAI  K      PK  G+ KR T GY  SEHINNYYRTTKV
Sbjct:    4 KKAVLSRRNFLLTVGAGGAATAAAIVGKNTSVPAPK--GTDKRATSGYKVSEHINNYYRTTKV 64          
BLAST of mRNA_P-wetherbeei_contig16057.2.1 vs. uniprot
Match: A0A1F4FBR6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4FBR6_9PROT)

HSP 1 Score: 68.6 bits (166), Expect = 6.760e-14
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   13 KTTILNRRNFLLAVGAGGAATVAAIGAKAGLQAQPKVSGSGKRDTRGYAASEHINNYYRTTKV 201
            ++T L+RRNFLL VGAGGAAT AAI AK    +Q       +R TRGY ASEH+NNYYRTTKV
Sbjct:    4 RSTRLSRRNFLLTVGAGGAATAAAIVAKNSPTSQIPDK-KDQRSTRGYHASEHVNNYYRTTKV 65          
BLAST of mRNA_P-wetherbeei_contig16057.2.1 vs. uniprot
Match: A0A537A4U4_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A4U4_9PROT)

HSP 1 Score: 68.6 bits (166), Expect = 7.660e-14
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   25 LNRRNFLLAVGAGGAATVAAIGAKAGLQAQP----KVSGSGKRDTRGYAASEHINNYYRTTKV 201
            L+RRNFLL +GAGGAAT AA+ A      QP      +   KR TRGY ASEH+NNYYRTTKV
Sbjct:    8 LSRRNFLLTLGAGGAATAAAVVATKAPSTQPASATNAATKDKRATRGYQASEHVNNYYRTTKV 70          
BLAST of mRNA_P-wetherbeei_contig16057.2.1 vs. uniprot
Match: A0A537CTQ1_9PROT (Twin-arginine translocation signal domain-containing protein n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CTQ1_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 1.330e-13
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   13 KTTILNRRNFLLAVGAGGAATVAAIGAKA-GLQAQPKVSGSGKRDTRGYAASEHINNYYRTTKV 201
            +T  L+RRNFLL VGAGGAAT AA  AK+ G  +Q K     KR TRGY ASEH++NYYRTTKV
Sbjct:    4 RTRRLSRRNFLLTVGAGGAATAAAFMAKSSGSNSQGKDK---KRATRGYQASEHVSNYYRTTKV 64          
BLAST of mRNA_P-wetherbeei_contig16057.2.1 vs. uniprot
Match: A0A537BW75_9PROT (Formate dehydrogenase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BW75_9PROT)

HSP 1 Score: 67.4 bits (163), Expect = 1.940e-13
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   13 KTTILNRRNFLLAVGAGGAATVAAIGAK-AGLQAQPKVSGSGKRDTRGYAASEHINNYYRTTKV 201
            +T  L+RRNFLL+VGAG AAT AAI AK +G     K    GKR TRGY ASEH++NYYRTTKV
Sbjct:    4 RTRRLSRRNFLLSVGAGSAATAAAIVAKKSGSDVVEK--DQGKRATRGYQASEHVSNYYRTTKV 65          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16057.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A2V7GN54_9BACT3.650e-1869.84Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A1F4CC57_9PROT3.240e-1768.25Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4C4A8_9PROT1.780e-1667.21Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4F3V0_9PROT2.020e-1571.19Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A521YMV4_9PROT4.080e-1566.67Twin-arginine translocation signal domain-containi... [more]
A0A1F3YST7_9PROT8.030e-1565.08Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A1F4FBR6_9PROT6.760e-1463.49Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537A4U4_9PROT7.660e-1460.32Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537CTQ1_9PROT1.330e-1364.06Twin-arginine translocation signal domain-containi... [more]
A0A537BW75_9PROT1.940e-1364.06Formate dehydrogenase n=1 Tax=Betaproteobacteria b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16057contigP-wetherbeei_contig16057:1187..1390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog85643.Tmz1t_3710
Model size204
Max annot lvl206389|Rhodocyclales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.69e-07
EggNOG OGs2ENJT@1|root,33G76@2|Bacteria,1NMX3@1224|Proteobacteria,2VXMJ@28216|Betaproteobacteria,2KXNQ@206389|Rhodocyclales
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186075.6586483-CDS-P-wetherbeei_contig16057:1186..13901683186075.6586483-CDS-P-wetherbeei_contig16057:1186..1390Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16057 1187..1390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16057.2.1prot_P-wetherbeei_contig16057.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16057 1187..1390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16057.2.1

>prot_P-wetherbeei_contig16057.2.1 ID=prot_P-wetherbeei_contig16057.2.1|Name=mRNA_P-wetherbeei_contig16057.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
MAKTKTTILNRRNFLLAVGAGGAATVAAIGAKAGLQAQPKVSGSGKRDTR
GYAASEHINNYYRTTKV*
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mRNA from alignment at P-wetherbeei_contig16057:1187..1390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16057.2.1 ID=mRNA_P-wetherbeei_contig16057.2.1|Name=mRNA_P-wetherbeei_contig16057.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig16057:1187..1390+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTAAAACTAAAACGACGATTCTGAACAGGCGCAATTTCCTCCTCGC GGTCGGGGCAGGCGGCGCCGCCACTGTGGCCGCGATCGGCGCCAAAGCCG GGCTGCAGGCGCAACCGAAAGTTTCCGGATCAGGCAAGCGGGACACCCGC GGCTATGCCGCCTCCGAGCACATCAACAACTACTACCGCACCACCAAGGT CTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16057:1187..1390+

>mRNA_P-wetherbeei_contig16057.2.1 ID=mRNA_P-wetherbeei_contig16057.2.1|Name=mRNA_P-wetherbeei_contig16057.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig16057:1187..1390+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTAAAACTAAAACGACGATTCTGAACAGGCGCAATTTCCTCCTCGC
GGTCGGGGCAGGCGGCGCCGCCACTGTGGCCGCGATCGGCGCCAAAGCCG
GGCTGCAGGCGCAACCGAAAGTTTCCGGATCAGGCAAGCGGGACACCCGC
GGCTATGCCGCCTCCGAGCACATCAACAACTACTACCGCACCACCAAGGT
CTGA
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