mRNA_P-wetherbeei_contig1605.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1605.4.1
Unique NamemRNA_P-wetherbeei_contig1605.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1605.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1605contigP-wetherbeei_contig1605:6325..6899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size575
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186075.461592-UTR-P-wetherbeei_contig1605:6324..65191683186075.461592-UTR-P-wetherbeei_contig1605:6324..6519Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1605 6325..6519 -
1683186075.4817543-UTR-P-wetherbeei_contig1605:6861..68991683186075.4817543-UTR-P-wetherbeei_contig1605:6861..6899Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1605 6862..6899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186075.471907-CDS-P-wetherbeei_contig1605:6519..68611683186075.471907-CDS-P-wetherbeei_contig1605:6519..6861Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1605 6520..6861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1605.4.1prot_P-wetherbeei_contig1605.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1605 6520..6861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1605.4.1

>prot_P-wetherbeei_contig1605.4.1 ID=prot_P-wetherbeei_contig1605.4.1|Name=mRNA_P-wetherbeei_contig1605.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MQTNRRNDATIATLAALATTKTHHLQEGQPRLTEIHAQRSQAEGAGAAGD
VHDLVSDDEAEEGAAPAAPSSVPEDPDQRRMDGDPEADVVGTEDLGGLCL
ADIRQLCRGGFRG*
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mRNA from alignment at P-wetherbeei_contig1605:6325..6899-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1605.4.1 ID=mRNA_P-wetherbeei_contig1605.4.1|Name=mRNA_P-wetherbeei_contig1605.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=575bp|location=Sequence derived from alignment at P-wetherbeei_contig1605:6325..6899- (Phaeothamnion wetherbeei SAG_119_79)
ATCTACCTCCTGCTGGAGCTGCTAGATTGCTCGGCTGGATGCAGACGAAT
CGTCGCAACGACGCAACCATTGCTACACTGGCTGCTCTGGCGACCACAAA
AACCCACCATCTGCAGGAGGGTCAACCGCGCCTCACCGAAATCCATGCGC
AGCGGTCGCAGGCGGAGGGGGCGGGAGCAGCAGGCGATGTGCACGACCTC
GTGTCGGACGATGAAGCCGAGGAGGGCGCAGCGCCCGCCGCACCTTCGTC
TGTGCCTGAGGATCCTGACCAGAGGCGCATGGATGGCGACCCCGAAGCCG
ACGTTGTGGGGACAGAGGACTTAGGGGGGCTCTGCCTCGCGGACATACGA
CAGCTGTGTCGAGGAGGCTTTCGGGGGTGAAAACGAGCCGGCTTTCGTCC
CGCAAGCCATGGTGGAGCTCTGGACGGATGTTGGCGTTGACGTTAACAGC
GCAGCTCTGGCGCCTGACTTCCAACCTGCCGCCCTCTTGCCGCGCAACCA
ATGGACACGTTTGGCGATACGGAGTATGACCCAGACCTCGATTTGGACGA
TCGCATCGATGGGGCGTTCGCCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1605:6325..6899-

>mRNA_P-wetherbeei_contig1605.4.1 ID=mRNA_P-wetherbeei_contig1605.4.1|Name=mRNA_P-wetherbeei_contig1605.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig1605:6325..6899- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGACGAATCGTCGCAACGACGCAACCATTGCTACACTGGCTGCTCT
GGCGACCACAAAAACCCACCATCTGCAGGAGGGTCAACCGCGCCTCACCG
AAATCCATGCGCAGCGGTCGCAGGCGGAGGGGGCGGGAGCAGCAGGCGAT
GTGCACGACCTCGTGTCGGACGATGAAGCCGAGGAGGGCGCAGCGCCCGC
CGCACCTTCGTCTGTGCCTGAGGATCCTGACCAGAGGCGCATGGATGGCG
ACCCCGAAGCCGACGTTGTGGGGACAGAGGACTTAGGGGGGCTCTGCCTC
GCGGACATACGACAGCTGTGTCGAGGAGGCTTTCGGGGGTGA
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