mRNA_P-wetherbeei_contig16028.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16028.1.2
Unique NamemRNA_P-wetherbeei_contig16028.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16028.1.2 vs. uniprot
Match: D8LMR1_ECTSI (Ubiquinone biosynthesis O-methyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR1_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 5.410e-70
Identity = 128/240 (53.33%), Postives = 162/240 (67.50%), Query Frame = 1
Query:    1 PTSRAGVGPLHSMNPVRVSFIRDCVLATRSQSSPAAGAAGPLSGLQVLDVGCGGGLLSEALARLGGAVTGIDPAAENIATAKAHARGDPLTRGIIYRVGMVQEMA--AARFDLVVSSEVIEHVDSPREFAAALAALVKPGGILFLSTINRTVKSFAVAIVGAECIARLVPVGTHNWRKFVTPEELEEYVQAVESGVSGGAGIRLLRRSGMAYDPVRDKWWFT-ADERVNYIACYTKAGSG 711
            P SR G GPLHSMN  RV +I   V ++  ++SP  G+A PL+GL+ LDVGCGGGLLSE+LARLG  V G+DP+ EN+A A AHA+GDPLTR I Y     +E+     +FDLV S EVIEHV+ P  F ++LA+L +PGG+L +STINRT KSFA+AIVGAE +A +VPVGTH+WRKFV PE+L   +QA   G  G     L+   G+ Y+PV  +W     D  VNYI    + G G
Sbjct:   88 PASRQGAGPLHSMNVTRVQYIVRQVGSSLPEASPHWGSATPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAQGDPLTRTIRYEATTAEELENRGEQFDLVTSLEVIEHVEDPAGFVSSLASLTRPGGMLAMSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLQA--HGFPG----ELVETCGLMYNPVSGRWKENPGDLDVNYIVTALRGGGG 321          
BLAST of mRNA_P-wetherbeei_contig16028.1.2 vs. uniprot
Match: A0A836CM95_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM95_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.600e-60
Identity = 113/226 (50.00%), Postives = 146/226 (64.60%), Query Frame = 1
Query:   37 MNPVRVSFIRDCVLATRSQSSPAAGAAGPLSGLQVLDVGCGGGLLSEALARLGGAVTGIDPAAENIATAKAHARGDPLTRGIIYRVGMVQEMA----AARFDLVVSSEVIEHVDSPREFAAALAALVKPGGILFLSTINRTVKSFAVAIVGAECIARLVPVGTHNWRKFVTPEELEEYVQAVESGVSGGAGIRLLRRSGMAYDPVRDKWWFTADER-VNYIACYTK 699
            MNPVR  FI +   AT   +  +  A  PL+G   LDVGCGGGLLSE+LARLGG V GIDP+ EN+A A  HA GDPLTRGI Y     +++     +  +DLV + EV+EHV     F  +LAALVKPGG L +STINRT K++A+AI+GAE IA L+PVGTH+W KFVTP EL   ++           +++ R +GM ++P+R  W  +AD+  VNYI C  K
Sbjct:    1 MNPVRTRFIAE---ATAGDAQHSGSAFKPLAGRTCLDVGCGGGLLSESLARLGGNVKGIDPSPENVAVAAEHALGDPLTRGIAYEAAAAEDLVDRGESGAYDLVCALEVVEHVTDVSAFIGSLAALVKPGGHLVMSTINRTPKAYALAIIGAEVIAGLLPVGTHDWDKFVTPRELMARMRT--------GNLQIRRSAGMVFNPLRRSWELSADDLDVNYIICAQK 215          
BLAST of mRNA_P-wetherbeei_contig16028.1.2 vs. uniprot
Match: UPI000B4ADE69 (bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG n=1 Tax=Rhodomicrobium TaxID=1068 RepID=UPI000B4ADE69)

HSP 1 Score: 200 bits (509), Expect = 4.780e-60
Identity = 115/224 (51.34%), Postives = 149/224 (66.52%), Query Frame = 1
Query:   25 PLHSMNPVRVSFIRDCVLA-TRSQSSPAAGAAGPLSGLQVLDVGCGGGLLSEALARLGGAVTGIDPAAENIATAKAHARGDPLTRGIIYRVGMVQEMAAA--RFDLVVSSEVIEHVDSPREFAAALAALVKPGGILFLSTINRTVKSFAVAIVGAECIARLVPVGTHNWRKFVTPEELEEYVQAVESGVSGGAGIRLLRRSGMAYDPVRDKWWFTADERVNYIA 687
            PLH + P R++FIRD V+A  R +  PA      L+ L+VLDVGCGGGL++E LARLG AVTGIDPAAENIA A+AHA    L   I YR    Q++AA   RFD VV+ EV+EHV    EF  + AAL++PGG+L +ST+NRT KS+A+ IV AE +   +P GTH W++FVTPEEL         G+   AG+  +R  GM+YDP+R +W  T D  VNY++
Sbjct:   28 PLHQLGPARLAFIRDEVVAHLRREPRPAK----ILADLRVLDVGCGGGLVAEPLARLGAAVTGIDPAAENIAVARAHAEAQGLA--IDYRAATTQDLAAGGERFDCVVAMEVVEHVPDVPEFLRSCAALMRPGGLLLVSTLNRTAKSYALGIVAAEYLLGWLPRGTHQWQRFVTPEELR--------GMFRDAGLEPIRERGMSYDPLRARWDLTDDCDVNYLS 237          
BLAST of mRNA_P-wetherbeei_contig16028.1.2 vs. uniprot
Match: A0A6S6QLH4_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Terrihabitans soli TaxID=708113 RepID=A0A6S6QLH4_9HYPH)

HSP 1 Score: 199 bits (507), Expect = 9.000e-60
Identity = 110/221 (49.77%), Postives = 144/221 (65.16%), Query Frame = 1
Query:   25 PLHSMNPVRVSFIRDCVLATRSQSSPAAGAAGPLSGLQVLDVGCGGGLLSEALARLGGAVTGIDPAAENIATAKAHARGDPLTRGIIYRVGMVQEMAAA--RFDLVVSSEVIEHVDSPREFAAALAALVKPGGILFLSTINRTVKSFAVAIVGAECIARLVPVGTHNWRKFVTPEELEEYVQAVESGVSGGAGIRLLRRSGMAYDPVRDKWWFTADERVNY 681
            PLH + PVRV ++RD  LA R    P++     L GL +LDVGCGGG+LSE LARLG +VTGI+PAAE+IA AK+HA    L   I YR    +E+ A    FD V++SEVIEHVD P  F   ++ L +PGG++  ST+NRTVKSFA+AIVGAE + R +P GTH+W+KFVTP+EL  +  +        AG+     +GM +DP+RD+W    D   NY
Sbjct:   29 PLHKLTPVRVEYVRDR-LAERFARDPSS--LKSLKGLNILDVGCGGGILSEPLARLGASVTGIEPAAESIAVAKSHAEEAGLD--INYRAASAEELLAEGRTFDAVIASEVIEHVDDPASFVKTISGLARPGGLVLFSTLNRTVKSFALAIVGAEYVLRWIPAGTHDWQKFVTPDELTSWCAS--------AGVEATDVTGMIFDPLRDRWRLGRDSGCNY 236          
BLAST of mRNA_P-wetherbeei_contig16028.1.2 vs. uniprot
Match: A0A4R2GUU5_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=4 Tax=Camelimonas TaxID=1017183 RepID=A0A4R2GUU5_9HYPH)

HSP 1 Score: 199 bits (507), Expect = 1.420e-59
Identity = 112/233 (48.07%), Postives = 147/233 (63.09%), Query Frame = 1
Query:   25 PLHSMNPVRVSFIRDCVLATRSQSSPAAGAAGPLSGLQVLDVGCGGGLLSEALARLGGAVTGIDPAAENIATAKAHARGDPLTRGIIYRVGMVQEMAAA--RFDLVVSSEVIEHVDSPREFAAALAALVKPGGILFLSTINRTVKSFAVAIVGAECIARLVPVGTHNWRKFVTPEELEEYVQAVESGVSGGAGIRLLRRSGMAYDPVRDKWWFTADERVNYIACYTKAGSGGI 717
            PLH +NPVR++FIRD V     +    A    P +GL  LDVGCG G+L E L R+G AVTG+DPA ENIA A+AHA    L   I YR  +V+++AAA  RFD+V + EVIEHV  P  F AA  A VKP G+L ++T+NRT K++A+AIVGAE + R VP GTH+W +FVTPEEL  ++         G G+ + R  G+ Y+P RD W  + D  VNY+    + G  G+
Sbjct:   37 PLHRLNPVRLAFIRDVVCEHFGRD---ARETAPFAGLTALDVGCGAGMLCEPLRRMGAAVTGLDPAPENIAVARAHAEAGGLE--IAYRGELVEDVAAAGERFDIVTAMEVIEHVPDPAGFVAACCAAVKPDGVLLMATLNRTRKAWALAIVGAEYVLRWVPRGTHDWNRFVTPEELAAFI--------AGGGMTVQRTEGVVYEPWRDVWRRSRDTDVNYMLSARRLGGQGV 256          
BLAST of mRNA_P-wetherbeei_contig16028.1.2 vs. uniprot
Match: A0A849I130_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Enterovirga sp. DB1703 TaxID=2730920 RepID=A0A849I130_9HYPH)

HSP 1 Score: 199 bits (506), Expect = 1.840e-59
Identity = 115/228 (50.44%), Postives = 146/228 (64.04%), Query Frame = 1
Query:   28 LHSMNPVRVSFIRD--CVLATRSQSSPAAGAAGPLSGLQVLDVGCGGGLLSEALARLGGAVTGIDPAAENIATAKAHARGDPLTRGIIYRVGMVQEMAA--ARFDLVVSSEVIEHVDSPREFAAALAALVKPGGILFLSTINRTVKSFAVAIVGAECIARLVPVGTHNWRKFVTPEELEEYVQAVESGVSGGAGIRLLRRSGMAYDPVRDKWWFTADERVNYIACYTK 699
            LH +NP+R+SFIRD  C    R   +P      PL+GL VLDVGCG GLLSE +ARLGGAVTG+DP+A NI  A+ HA    L   I YR   V+E+AA   RFDLV++ EV+EHV     F  A  A V PGG+L L+TINRT++SFA+AI+GAE + + +P GTH+W KFVTP+EL E V+A        AG+   R  GM ++PV   W  + D  VNY+A   K
Sbjct:   38 LHRINPLRMSFIRDEACRHFRREPKAPF-----PLAGLSVLDVGCGAGLLSEPVARLGGAVTGLDPSARNIEAARRHAAEGGLA--IEYRTETVEEIAARGGRFDLVIAMEVVEHVPEVESFVRACGAAVAPGGLLLLATINRTMRSFALAILGAEYLLKWLPKGTHDWEKFVTPDELREAVEA--------AGLTGFRTRGMVFNPVERDWSLSRDTAVNYLAAAEK 250          
BLAST of mRNA_P-wetherbeei_contig16028.1.2 vs. uniprot
Match: A0A1E4CWC4_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A1E4CWC4_9HYPH)

HSP 1 Score: 198 bits (504), Expect = 3.250e-59
Identity = 109/223 (48.88%), Postives = 146/223 (65.47%), Query Frame = 1
Query:   25 PLHSMNPVRVSFIRDCVLATRSQSSPAAGAAGPLSGLQVLDVGCGGGLLSEALARLGGAVTGIDPAAENIATAKAHARGDPLTRGIIYRVGMVQEMAAAR--FDLVVSSEVIEHVDSPREFAAALAALVKPGGILFLSTINRTVKSFAVAIVGAECIARLVPVGTHNWRKFVTPEELEEYVQAVESGVSGGAGIRLLRRSGMAYDPVRDKWWFTADERVNYIA 687
            PLH + P R++F+R  ++    Q++   G   P +GL VLD+GCGGGL+SE +ARLG +VTGIDPAAENI  A+ HA G  LT  I YR  +V+++ A    FD V+  EV+EHV     F A  A LV+PGG++ LSTINRT+KS+A+AIVGAE I R +PVGTH W +FVTP+EL  +  A        AG+ +  R G+ Y+P+ D W  + D  VNY+A
Sbjct:   35 PLHKLGPARLAFVRQEIVRHFPQAT---GGLRPFAGLTVLDIGCGGGLVSEPVARLGASVTGIDPAAENIEAARRHADGQGLT--IDYRSALVEDLVAESRTFDCVLCLEVVEHVPDVAAFIATCAKLVRPGGLMILSTINRTLKSYALAIVGAEYILRWLPVGTHQWDRFVTPDELARHADA--------AGLTMSAREGLVYNPLTDAWSLSQDLDVNYMA 244          
BLAST of mRNA_P-wetherbeei_contig16028.1.2 vs. uniprot
Match: A0A7W6EGY5_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Pseudochelatococcus contaminans TaxID=1538103 RepID=A0A7W6EGY5_9HYPH)

HSP 1 Score: 198 bits (504), Expect = 3.900e-59
Identity = 112/227 (49.34%), Postives = 153/227 (67.40%), Query Frame = 1
Query:   10 RAGVGPLHSMNPVRVSFIRDCVLATRSQSSPAAGAAGPLSGLQVLDVGCGGGLLSEALARLGGAVTGIDPAAENIATAKAHARGDPLTRGIIYRVGMVQEMAAA--RFDLVVSSEVIEHVDSPREFAAALAALVKPGGILFLSTINRTVKSFAVAIVGAECIARLVPVGTHNWRKFVTPEELEEYVQAVESGVSGGAGIRLLRRSGMAYDPVRDKWWFTADERVNYI 684
            R  + PLH  NPVRV+F+RD  LAT ++    A A  PL+GL +LD+GCGGG+LSE LARLG +VTG+DPA +N+A A+ HA G  L   I YR   V+ +AA    FD+V++ EV+EHV     F AA  A+VKPGG+L ++T+NRT+KSFA+AIVGAE + R +P GTH+W KF+TP+EL        +G     G+ +  R+G+ Y P++D+W  + D  VNYI
Sbjct:   37 RGPMRPLHRFNPVRVAFVRD--LAT-NRFGRDADADAPLAGLSLLDIGCGGGVLSEPLARLGASVTGLDPAEKNLAVARGHAVGQGLD--IDYRPETVEALAARGETFDIVLAMEVVEHVADVDAFVAAACAVVKPGGVLVMATLNRTLKSFALAIVGAEYVLRWLPRGTHDWHKFITPDEL--------AGAITRNGLAITERAGVVYHPLQDEWRRSGDLSVNYI 250          
BLAST of mRNA_P-wetherbeei_contig16028.1.2 vs. uniprot
Match: UPI001FE2DB5F (bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG n=1 Tax=Pseudochelatococcus lubricantis TaxID=1538102 RepID=UPI001FE2DB5F)

HSP 1 Score: 196 bits (498), Expect = 9.370e-59
Identity = 109/222 (49.10%), Postives = 150/222 (67.57%), Query Frame = 1
Query:   25 PLHSMNPVRVSFIRDCVLATRSQSSPAAGAAGPLSGLQVLDVGCGGGLLSEALARLGGAVTGIDPAAENIATAKAHARGDPLTRGIIYRVGMVQEMAAA--RFDLVVSSEVIEHVDSPREFAAALAALVKPGGILFLSTINRTVKSFAVAIVGAECIARLVPVGTHNWRKFVTPEELEEYVQAVESGVSGGAGIRLLRRSGMAYDPVRDKWWFTADERVNYI 684
            PLH  NPVRV +IRD + A R      A A  PL+GL VLD+GCGGG+LSE LARLG +VTG+DPA +N+A A+AHA G+ L   I YR   V+ +AA+  +FD+V++ EV+EHV     F AA  A+V+PGG+L ++T+NRT KSFA+AIVGAE + R +P GTH+WR+F+TP+EL   +           G+ +  R+G+ Y P+ D W  ++D  VNY+
Sbjct:    3 PLHRFNPVRVGYIRD-LAANRFGRDIRADA--PLAGLSVLDIGCGGGVLSEPLARLGASVTGLDPAEKNLAVARAHAAGEGLA--IDYRAQTVESVAASGEQFDVVLAMEVVEHVADVEAFVAATCAVVRPGGLLVMATLNRTAKSFALAIVGAEYVLRWLPRGTHDWRRFITPDELAAAISR--------HGLAVTDRTGVVYRPLGDTWQTSSDLSVNYM 211          
BLAST of mRNA_P-wetherbeei_contig16028.1.2 vs. uniprot
Match: A0A371B8D4_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=2 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371B8D4_9HYPH)

HSP 1 Score: 197 bits (500), Expect = 1.560e-58
Identity = 108/237 (45.57%), Postives = 149/237 (62.87%), Query Frame = 1
Query:   10 RAGVGPLHSMNPVRVSFIRDCVLATRSQSSPAAGAAGPLSGLQVLDVGCGGGLLSEALARLGGAVTGIDPAAENIATAKAHARGDPLTRGIIYRVGMVQEMAAA--RFDLVVSSEVIEHVDSPREFAAALAALVKPGGILFLSTINRTVKSFAVAIVGAECIARLVPVGTHNWRKFVTPEELEEYVQAVESGVSGGAGIRLLRRSGMAYDPVRDKWWFTADERVNYIACYTKAGSGG 714
            R  + PLH +NPVR+ +IRD V A   +          L+GL++LD+GCG G+LSE L RLG  + G+DPA ENIA A+AHA  + L   I YR    + +A A  RFD+V++ EV+EHV    EF A  A +VKPGG++  +T+NRT+KSFA+AIVGAE + R VP GTH W KFVTP E E  ++        GAG+ ++   G+ ++P+ D+W  ++D  VNY+   TK  S G
Sbjct:   30 RGPMAPLHKLNPVRIGYIRDQVAAHFGRDPSKLDC---LAGLRILDIGCGAGILSEPLTRLGAGMVGVDPAEENIAVARAHAEDEALE--IDYRAETAEVLAEAGERFDVVLAMEVVEHVVDVPEFVATCAGMVKPGGLMIAATLNRTLKSFALAIVGAEYVLRWVPRGTHQWDKFVTPAEFERAIE--------GAGLDVIAERGVIFNPLADRWQLSSDMDVNYMLVGTKRVSSG 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16028.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR1_ECTSI5.410e-7053.33Ubiquinone biosynthesis O-methyltransferase, mitoc... [more]
A0A836CM95_9STRA1.600e-6050.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
UPI000B4ADE694.780e-6051.34bifunctional 2-polyprenyl-6-hydroxyphenol methylas... [more]
A0A6S6QLH4_9HYPH9.000e-6049.77Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A4R2GUU5_9HYPH1.420e-5948.07Ubiquinone biosynthesis O-methyltransferase n=4 Ta... [more]
A0A849I130_9HYPH1.840e-5950.44Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A1E4CWC4_9HYPH3.250e-5948.88Ubiquinone biosynthesis O-methyltransferase n=2 Ta... [more]
A0A7W6EGY5_9HYPH3.900e-5949.34Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
UPI001FE2DB5F9.370e-5949.10bifunctional 2-polyprenyl-6-hydroxyphenol methylas... [more]
A0A371B8D4_9HYPH1.560e-5845.57Ubiquinone biosynthesis O-methyltransferase n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16028contigP-wetherbeei_contig16028:78..1553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMR1
Preferred nameCOQ3
PFAMsMethyltransf_11,Methyltransf_23
Model size889
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00392,RC01895
KEGG koko:K00568,ko:K00591
KEGG ReactionR02175,R04711,R04988,R05614,R07235,R08769,R08771,R08781
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00117,M00128
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004395,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008757,GO:0009058,GO:0009108,GO:0009987,GO:0010420,GO:0016020,GO:0016740,GO:0016741,GO:0019866,GO:0019898,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032259,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051186,GO:0051188,GO:0061542,GO:0061543,GO:0071704,GO:1901576,GO:1901661,GO:1901663
Exons4
Evalue9.75e-65
EggNOG OGsCOG2227@1|root,KOG1270@2759|Eukaryota
Ec32 ortholog descriptionUbiquinone biosynthesis O-methyltransferase
Ec32 orthologEc-02_003340.1
EC2.1.1.114,2.1.1.222,2.1.1.64
Descriptionhexaprenyldihydroxybenzoate methyltransferase activity
Cds size684
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16028.1.2prot_P-wetherbeei_contig16028.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16028 247..1517 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.907733-UTR-P-wetherbeei_contig16028:77..2461683186074.907733-UTR-P-wetherbeei_contig16028:77..246Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16028 78..246 -
1683186074.9562092-UTR-P-wetherbeei_contig16028:1517..15531683186074.9562092-UTR-P-wetherbeei_contig16028:1517..1553Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16028 1518..1553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.917315-CDS-P-wetherbeei_contig16028:246..5131683186074.917315-CDS-P-wetherbeei_contig16028:246..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16028 247..513 -
1683186074.9249108-CDS-P-wetherbeei_contig16028:861..9931683186074.9249108-CDS-P-wetherbeei_contig16028:861..993Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16028 862..993 -
1683186074.9322488-CDS-P-wetherbeei_contig16028:1119..13311683186074.9322488-CDS-P-wetherbeei_contig16028:1119..1331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16028 1120..1331 -
1683186074.94459-CDS-P-wetherbeei_contig16028:1444..15171683186074.94459-CDS-P-wetherbeei_contig16028:1444..1517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16028 1445..1517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16028.1.2

>prot_P-wetherbeei_contig16028.1.2 ID=prot_P-wetherbeei_contig16028.1.2|Name=mRNA_P-wetherbeei_contig16028.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=228bp
MNPVRVSFIRDCVLATRSQSSPAAGAAGPLSGLQVLDVGCGGGLLSEALA
RLGGAVTGIDPAAENIATAKAHARGDPLTRGIIYRVGMVQEMAAARFDLV
VSSEVIEHVDSPREFAAALAALVKPGGILFLSTINRTVKSFAVAIVGAEC
IARLVPVGTHNWRKFVTPEELEEYVQAVESGVSGGAGIRLLRRSGMAYDP
VRDKWWFTADERVNYIACYTKAGSGGI*
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mRNA from alignment at P-wetherbeei_contig16028:78..1553-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16028.1.2 ID=mRNA_P-wetherbeei_contig16028.1.2|Name=mRNA_P-wetherbeei_contig16028.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1476bp|location=Sequence derived from alignment at P-wetherbeei_contig16028:78..1553- (Phaeothamnion wetherbeei SAG_119_79)
CCCACATCTCGCGCCGGAGTTGGCCCGCTGCATTCGATGAACCCGGTTCG GGTGAGCTTCATCAGGGACTGCGTCCTCGCGACACGATCCCAATCTTCCC CGGCGGCAGGTCAGAACACGATTGGATCCACGCCTGGGTACCCCTGGCGT GTAAGAAAGATTTAACGTGAAATGGCGGCAACTGGCCTGTTTCCCACTCT CTTGCCCTTCCCATATTTGCAGGCGCGGCGGGACCCCTTTCGGGCCTGCA GGTACTCGACGTGGGCTGCGGCGGCGGCTTGCTCTCTGAGGCGCTTGCAC GCCTCGGCGGCGCGGTAACGGGCATCGATCCGGCTGCCGAAAACATTGCC ACTGCGAAGGCGCACGCTCGGGGCGACCCTCTGACGAGAGGCATCATCTA CCGCGTCGGTATGGTGCAGGAGATGGCGGCAGCGGTTTCTATGAAGGGTG GAGCGGCGGCGCCAGACGCTGGCATGGCGAAGTCTGCCAGTGAGGAGGCT GGGGCTACACGTGACACCATCGCCACCGGCTCCACGGATCCCGCAGCGGG CCCGGTGGAGCGTTTCGACCTCGTTGTGTCTTCGGAGGTGATCGAGCACG TGGACAGCCCGCGCGAGTTTGCGGCGGCGCTGGCAGCGCTTGTCAAGCCT GGCGGCATCCTCTTCCTCTCGACCATCAATCGAACAGTCAAAGTCAGTCT AGCACGAAATCGTCATCTACTTGTGTTACTCTGCATCCTGCATGACGTGG AGTGAAAGTTCGATGCTACATCTTCTCCCAGTGCTGGTGGAAAAGGAAAT TCCTGCTATTGGTGCCAGTGACTGCAGCATGGCTTTCATCGTTTTTCAAC CTTTTTCTTATATGATCGTGCTTGTCATCGCTTTAACCCTTTTCCTATCT ATCATAGTGTTGTTATTCTCCTGAAACGGGCCCAAGAGCTGCGAGAACTG CACAGAAGGTTATTCTCCTCTTTTGCTCGTTGCTGCCCGTCGCGGCTGAA GCCGCAAAATCCGCCGCCGCTCCCCCTTATGTCCTTGCAGTCCTTCGCAG TGGCCATCGTCGGCGCCGAATGCATCGCCCGGCTGGTTCCGGTTGGCACG CACAACTGGCGCAAGTTTGTCACGCCCGAAGAACTCGAGGAATACGTCCA GGCTGTGGAGTCTGGCGTCAGCGGCGGCGCCGGCATCCGGCTACTGCGTC GGTCGGGAATGGCCTACGACCCTGTCCGGGATAAGTGGTGGTTCACCGCC GACGAACGCGTCAACTACATTGCCTGCTACACAAAAGCTGGCAGTGGTGG CATCTAGATTCTTACCATCGGTGTGTCGCGTTCGACTAGCACAGTCAAGG GCGGGGAAGGGGTAGCAAGAATTGAACTAATAAATCGTTAAGCAGCAAGA GTGGTGGACAATGTCAATATATAGAACCATGGAGCACAGAGAGAGGAAAA CTGGTAAGAAAGATCGCATTTCCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16028:78..1553-

>mRNA_P-wetherbeei_contig16028.1.2 ID=mRNA_P-wetherbeei_contig16028.1.2|Name=mRNA_P-wetherbeei_contig16028.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig16028:78..1553- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCCGGTTCGGGTGAGCTTCATCAGGGACTGCGTCCTCGCGACACG
ATCCCAATCTTCCCCGGCGGCAGGCGCGGCGGGACCCCTTTCGGGCCTGC
AGGTACTCGACGTGGGCTGCGGCGGCGGCTTGCTCTCTGAGGCGCTTGCA
CGCCTCGGCGGCGCGGTAACGGGCATCGATCCGGCTGCCGAAAACATTGC
CACTGCGAAGGCGCACGCTCGGGGCGACCCTCTGACGAGAGGCATCATCT
ACCGCGTCGGTATGGTGCAGGAGATGGCGGCAGCGCGTTTCGACCTCGTT
GTGTCTTCGGAGGTGATCGAGCACGTGGACAGCCCGCGCGAGTTTGCGGC
GGCGCTGGCAGCGCTTGTCAAGCCTGGCGGCATCCTCTTCCTCTCGACCA
TCAATCGAACAGTCAAATCCTTCGCAGTGGCCATCGTCGGCGCCGAATGC
ATCGCCCGGCTGGTTCCGGTTGGCACGCACAACTGGCGCAAGTTTGTCAC
GCCCGAAGAACTCGAGGAATACGTCCAGGCTGTGGAGTCTGGCGTCAGCG
GCGGCGCCGGCATCCGGCTACTGCGTCGGTCGGGAATGGCCTACGACCCT
GTCCGGGATAAGTGGTGGTTCACCGCCGACGAACGCGTCAACTACATTGC
CTGCTACACAAAAGCTGGCAGTGGTGGCATCTAG
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