mRNA_P-wetherbeei_contig16014.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16014.1.1
Unique NamemRNA_P-wetherbeei_contig16014.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig16014.1.1 vs. uniprot
Match: A0A6M5YPS8_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YPS8_9BACT)

HSP 1 Score: 563 bits (1450), Expect = 1.310e-200
Identity = 265/318 (83.33%), Postives = 279/318 (87.74%), Query Frame = 1 
Query:    1 RQAAPVVSYAVRWDRFPPDLKPDGPKPGEDGAYTGSALVLLDPTRKRLRMDKDEITHFLNRRERLSRVRTVHRYDGNEQSFAHVIDNDAAKAPVEPVFPSVWLDPWGQSVRCTDEFNPLFWGHGLIWTGWVTALPFDWRAGPGQFRSAGREEVEGRVCIILHDTTARAESKETLWVDDERGVIARWRIERANGHGAEIRIRYQETPHGWLPQTWERWEREPGRPPSVVRRVRVEALTFDPAVSDDDFRIALRPEMTVHRNGFALRVRDDGTVEPEPIPPAWSDTVIAQAGTWAKRIGWSGLGGVLMAAVLFAVLVRLR 954
            R+AAPVVSY +RWD FP +  PD PKPGEDGAYTGSALVLLDPTRKRLRMDKDEITH LNRRERLSRVRT+HRYDGNEQSFA   D DAAKAP+EPVFPS+WL PWG S R TDEF PLFW HGLIWT  VTALPFDWRA PGQFRS+GRE VEGR CIILHDTTAR ESKETLWVDDERGVI RWRIERANG+GAEIRIRYQETPHGWLPQTWER +  P RPP+V RRVRVEALTFDP VSDDDFRIALRPEMTVHRN FALRVRDDGT+EPEP PPAWSDT++A   TWAKRIGW GLGGV+ AAVL  VLVRLR
Sbjct:   41 RRAAPVVSYVIRWDSFPTNPNPDAPKPGEDGAYTGSALVLLDPTRKRLRMDKDEITHILNRRERLSRVRTIHRYDGNEQSFAQAHDFDAAKAPIEPVFPSIWLGPWGSSARLTDEFGPLFWVHGLIWTERVTALPFDWRAKPGQFRSSGREAVEGRACIILHDTTARTESKETLWVDDERGVIVRWRIERANGYGAEIRIRYQETPHGWLPQTWERSDLRPDRPPAVARRVRVEALTFDPVVSDDDFRIALRPEMTVHRNSFALRVRDDGTLEPEPTPPAWSDTLVAHVSTWAKRIGWLGLGGVVTAAVLLGVLVRLR 358
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16014.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6M5YPS8_9BACT1.310e-20083.33Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16014contigP-wetherbeei_contig16014:258..1211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size954
Hectar predicted targeting categoryother localisation
Exons1
Cds size954
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.6581604-CDS-P-wetherbeei_contig16014:257..12111683186074.6581604-CDS-P-wetherbeei_contig16014:257..1211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16014 258..1211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16014.1.1prot_P-wetherbeei_contig16014.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16014 258..1211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16014.1.1

>prot_P-wetherbeei_contig16014.1.1 ID=prot_P-wetherbeei_contig16014.1.1|Name=mRNA_P-wetherbeei_contig16014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=318bp
RQAAPVVSYAVRWDRFPPDLKPDGPKPGEDGAYTGSALVLLDPTRKRLRM
DKDEITHFLNRRERLSRVRTVHRYDGNEQSFAHVIDNDAAKAPVEPVFPS
VWLDPWGQSVRCTDEFNPLFWGHGLIWTGWVTALPFDWRAGPGQFRSAGR
EEVEGRVCIILHDTTARAESKETLWVDDERGVIARWRIERANGHGAEIRI
RYQETPHGWLPQTWERWEREPGRPPSVVRRVRVEALTFDPAVSDDDFRIA
LRPEMTVHRNGFALRVRDDGTVEPEPIPPAWSDTVIAQAGTWAKRIGWSG
LGGVLMAAVLFAVLVRLR
back to top

mRNA from alignment at P-wetherbeei_contig16014:258..1211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16014.1.1 ID=mRNA_P-wetherbeei_contig16014.1.1|Name=mRNA_P-wetherbeei_contig16014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=954bp|location=Sequence derived from alignment at P-wetherbeei_contig16014:258..1211- (Phaeothamnion wetherbeei SAG_119_79)
AGGCAGGCGGCCCCGGTTGTGAGTTACGCGGTCCGGTGGGACCGCTTTCC
GCCCGATCTCAAGCCGGATGGCCCGAAGCCCGGAGAGGACGGCGCATATA
CGGGCTCCGCACTCGTCCTGCTCGATCCCACACGCAAGCGGCTCCGAATG
GACAAAGACGAAATCACGCACTTCCTGAACCGTCGGGAGCGGCTCAGCCG
GGTTCGTACGGTTCACCGGTACGATGGCAACGAACAGTCGTTCGCCCATG
TGATCGACAACGATGCCGCCAAAGCTCCGGTCGAGCCGGTCTTTCCGAGC
GTCTGGCTCGATCCCTGGGGTCAATCGGTACGATGCACAGACGAGTTCAA
CCCGCTCTTCTGGGGGCACGGGCTGATCTGGACCGGGTGGGTCACGGCGC
TTCCGTTCGATTGGCGGGCCGGACCCGGTCAGTTTCGTTCGGCCGGTCGG
GAGGAGGTCGAGGGGCGGGTCTGCATCATACTCCACGACACGACGGCGCG
AGCGGAATCGAAGGAGACGCTGTGGGTCGATGACGAACGCGGAGTGATTG
CCCGGTGGCGGATCGAGCGGGCGAACGGTCACGGCGCCGAGATCCGCATC
CGTTACCAGGAGACCCCGCACGGCTGGCTGCCGCAGACATGGGAGCGATG
GGAACGGGAACCGGGTCGGCCGCCGTCCGTGGTGCGTCGCGTCCGCGTCG
AGGCGCTGACGTTCGATCCCGCCGTCAGCGATGACGACTTTCGAATCGCG
CTCCGTCCGGAAATGACGGTCCACCGGAACGGTTTCGCGCTCCGCGTCCG
CGACGACGGAACCGTGGAACCGGAGCCGATTCCGCCGGCCTGGTCCGACA
CGGTGATCGCGCAGGCCGGCACGTGGGCGAAACGAATTGGTTGGTCGGGA
CTGGGCGGGGTGCTGATGGCGGCCGTGTTGTTCGCCGTGCTGGTCCGGCT
CCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig16014:258..1211-

>mRNA_P-wetherbeei_contig16014.1.1 ID=mRNA_P-wetherbeei_contig16014.1.1|Name=mRNA_P-wetherbeei_contig16014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=954bp|location=Sequence derived from alignment at P-wetherbeei_contig16014:258..1211- (Phaeothamnion wetherbeei SAG_119_79)
AGGCAGGCGGCCCCGGTTGTGAGTTACGCGGTCCGGTGGGACCGCTTTCC
GCCCGATCTCAAGCCGGATGGCCCGAAGCCCGGAGAGGACGGCGCATATA
CGGGCTCCGCACTCGTCCTGCTCGATCCCACACGCAAGCGGCTCCGAATG
GACAAAGACGAAATCACGCACTTCCTGAACCGTCGGGAGCGGCTCAGCCG
GGTTCGTACGGTTCACCGGTACGATGGCAACGAACAGTCGTTCGCCCATG
TGATCGACAACGATGCCGCCAAAGCTCCGGTCGAGCCGGTCTTTCCGAGC
GTCTGGCTCGATCCCTGGGGTCAATCGGTACGATGCACAGACGAGTTCAA
CCCGCTCTTCTGGGGGCACGGGCTGATCTGGACCGGGTGGGTCACGGCGC
TTCCGTTCGATTGGCGGGCCGGACCCGGTCAGTTTCGTTCGGCCGGTCGG
GAGGAGGTCGAGGGGCGGGTCTGCATCATACTCCACGACACGACGGCGCG
AGCGGAATCGAAGGAGACGCTGTGGGTCGATGACGAACGCGGAGTGATTG
CCCGGTGGCGGATCGAGCGGGCGAACGGTCACGGCGCCGAGATCCGCATC
CGTTACCAGGAGACCCCGCACGGCTGGCTGCCGCAGACATGGGAGCGATG
GGAACGGGAACCGGGTCGGCCGCCGTCCGTGGTGCGTCGCGTCCGCGTCG
AGGCGCTGACGTTCGATCCCGCCGTCAGCGATGACGACTTTCGAATCGCG
CTCCGTCCGGAAATGACGGTCCACCGGAACGGTTTCGCGCTCCGCGTCCG
CGACGACGGAACCGTGGAACCGGAGCCGATTCCGCCGGCCTGGTCCGACA
CGGTGATCGCGCAGGCCGGCACGTGGGCGAAACGAATTGGTTGGTCGGGA
CTGGGCGGGGTGCTGATGGCGGCCGTGTTGTTCGCCGTGCTGGTCCGGCT
CCGG
back to top