mRNA_P-wetherbeei_contig16008.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16008.2.1
Unique NamemRNA_P-wetherbeei_contig16008.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16008.2.1 vs. uniprot
Match: UPI00040EBB1C (helix-turn-helix domain-containing protein n=1 Tax=Dyadobacter alkalitolerans TaxID=492736 RepID=UPI00040EBB1C)

HSP 1 Score: 60.1 bits (144), Expect = 9.290e-10
Identity = 26/77 (33.77%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   37 VANKIELLSKALRDLTIRDIFAEVLDSKEASRYLKISWRYLQVLKEKKEIPYSQHGTIVRYRKADLDRGLDKHRVSG 267
            +  ++  L+K +      DI+ E+LD+KEA+RYLK+  R ++ L+++K + + Q G ++RY+++DL + + +H V G
Sbjct:   15 ITQELSRLTKFIMSQQKEDIYNEILDAKEAARYLKVCTRQVENLRKQKRLSFIQDGKMIRYKRSDLQKYIAEHYVKG 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16008.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00040EBB1C9.290e-1033.77helix-turn-helix domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16008contigP-wetherbeei_contig16008:1073..1369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog457424.BFAG_01338
PFAMsHTH_17
Model size297
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000129
EggNOG OGsCOG0789@1|root,COG0789@2|Bacteria,4PK17@976|Bacteroidetes,2FTQB@200643|Bacteroidia,4ARB8@815|Bacteroidaceae
DescriptionHelix-turn-helix domain
Cds size297
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186074.4992301-CDS-P-wetherbeei_contig16008:1072..13691683186074.4992301-CDS-P-wetherbeei_contig16008:1072..1369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16008 1073..1369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16008.2.1prot_P-wetherbeei_contig16008.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16008 1073..1369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16008.2.1

>prot_P-wetherbeei_contig16008.2.1 ID=prot_P-wetherbeei_contig16008.2.1|Name=mRNA_P-wetherbeei_contig16008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MQMTVQLPEVSEVANKIELLSKALRDLTIRDIFAEVLDSKEASRYLKISW
RYLQVLKEKKEIPYSQHGTIVRYRKADLDRGLDKHRVSGGTTNLGNGS*
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mRNA from alignment at P-wetherbeei_contig16008:1073..1369-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16008.2.1 ID=mRNA_P-wetherbeei_contig16008.2.1|Name=mRNA_P-wetherbeei_contig16008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig16008:1073..1369- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAATGACCGTTCAACTTCCCGAGGTATCCGAAGTAGCGAACAAAAT
CGAATTACTTAGCAAGGCACTTCGAGACCTCACTATCCGGGATATTTTCG
CCGAGGTCTTAGATAGCAAGGAGGCGTCCAGGTATCTTAAAATTTCGTGG
CGGTACTTGCAAGTGTTGAAGGAGAAGAAAGAGATCCCATACTCCCAGCA
TGGGACAATCGTCCGGTACCGGAAAGCCGACTTGGATAGGGGGCTGGACA
AGCACAGGGTTTCAGGGGGCACCACTAACCTAGGTAATGGATCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16008:1073..1369-

>mRNA_P-wetherbeei_contig16008.2.1 ID=mRNA_P-wetherbeei_contig16008.2.1|Name=mRNA_P-wetherbeei_contig16008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig16008:1073..1369- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAATGACCGTTCAACTTCCCGAGGTATCCGAAGTAGCGAACAAAAT
CGAATTACTTAGCAAGGCACTTCGAGACCTCACTATCCGGGATATTTTCG
CCGAGGTCTTAGATAGCAAGGAGGCGTCCAGGTATCTTAAAATTTCGTGG
CGGTACTTGCAAGTGTTGAAGGAGAAGAAAGAGATCCCATACTCCCAGCA
TGGGACAATCGTCCGGTACCGGAAAGCCGACTTGGATAGGGGGCTGGACA
AGCACAGGGTTTCAGGGGGCACCACTAACCTAGGTAATGGATCATGA
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