mRNA_P-wetherbeei_contig15997.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15997.1.1
Unique NamemRNA_P-wetherbeei_contig15997.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15997.1.1 vs. uniprot
Match: F1VYT1_9BURK (Secretion protein HlyD n=1 Tax=Oxalobacteraceae bacterium IMCC9480 TaxID=937450 RepID=F1VYT1_9BURK)

HSP 1 Score: 84.0 bits (206), Expect = 4.290e-20
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 GDVRFQPMVAGSFRARVTLVDKVIDAASGTFGVRLELPNPGGRVPAGIKCRVRF 162
            G VR  PM++GS+ A+VT+VD+VIDAASGTFGVRLEL NPG ++PAG++C V+F
Sbjct:   17 GQVRLDPMMSGSYSAKVTVVDRVIDAASGTFGVRLELRNPGNKIPAGMRCNVKF 70
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BLAST of mRNA_P-wetherbeei_contig15997.1.1 vs. uniprot
Match: UPI001CF8B20D (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Quatrionicoccus australiensis TaxID=138118 RepID=UPI001CF8B20D)

HSP 1 Score: 87.0 bits (214), Expect = 2.710e-19
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 GDVRFQPMVAGSFRARVTLVDKVIDAASGTFGVRLELPNPGGRVPAGIKCRVRF 162
            G+VR  P+++G ++ARV+ +DKVIDAASGTFGVRLELPN GGR+PAGIKC VR 
Sbjct:  221 GEVRLAPLISGVYKARVSAIDKVIDAASGTFGVRLELPNRGGRIPAGIKCNVRI 274
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BLAST of mRNA_P-wetherbeei_contig15997.1.1 vs. uniprot
Match: A0A845TPJ5_9BURK (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Oxalobacteraceae bacterium TaxID=1871070 RepID=A0A845TPJ5_9BURK)

HSP 1 Score: 84.0 bits (206), Expect = 1.400e-18
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 GDVRFQPMVAGSFRARVTLVDKVIDAASGTFGVRLELPNPGGRVPAGIKCRVRF 162
            G VR  PM++GS+ A+VT+VD+VIDAASGTFGVRLEL NPG ++PAG++C V+F
Sbjct:  160 GQVRLDPMMSGSYSAKVTVVDRVIDAASGTFGVRLELRNPGNKIPAGMRCNVKF 213
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BLAST of mRNA_P-wetherbeei_contig15997.1.1 vs. uniprot
Match: UPI001E5613D3 (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Aquincola tertiaricarbonis TaxID=391953 RepID=UPI001E5613D3)

HSP 1 Score: 77.8 bits (190), Expect = 1.060e-17
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 GDVRFQPMVAGSFRARVTLVDKVIDAASGTFGVRLELPNPGGRVPAGIKCRVRF 162
            G+V  +  ++G   A VT+VD+V+D+ASGTFGVRLELPNP G +PAG+KCRVRF
Sbjct:   13 GEVSLEAPLSGRHAALVTVVDRVVDSASGTFGVRLELPNPNGELPAGVKCRVRF 66
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BLAST of mRNA_P-wetherbeei_contig15997.1.1 vs. uniprot
Match: A0A519J5Y7_9GAMM (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A519J5Y7_9GAMM)

HSP 1 Score: 78.6 bits (192), Expect = 1.680e-16
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 GDVRFQPMVAGSFRARVTLVDKVIDAASGTFGVRLELPNPGGRVPAGIKCRVRFSA 168
            G V+   M++G+  A V +VD+VIDAASGTFGVRLELPNPG ++PAGI+C VRF++
Sbjct:  160 GTVQLGAMMSGNHTATVKVVDRVIDAASGTFGVRLELPNPGNKIPAGIRCNVRFAS 215
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BLAST of mRNA_P-wetherbeei_contig15997.1.1 vs. uniprot
Match: A0A4Q5P9A0_9BURK (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q5P9A0_9BURK)

HSP 1 Score: 77.8 bits (190), Expect = 3.320e-16
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 GDVRFQPMVAGSFRARVTLVDKVIDAASGTFGVRLELPNPGGRVPAGIKCRVRF 162
            G ++   M+ GS  A V +VD+VIDAASGTFGVRLELPNPG ++PAGI+C VRF
Sbjct:  160 GTIKLGAMMNGSHTATVKVVDRVIDAASGTFGVRLELPNPGNKIPAGIRCNVRF 213
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BLAST of mRNA_P-wetherbeei_contig15997.1.1 vs. uniprot
Match: A0A1Q7EGN2_9BACT (Efflux transporter periplasmic adaptor subunit n=2 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1Q7EGN2_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 3.970e-16
Identity = 34/46 (73.91%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   25 VAGSFRARVTLVDKVIDAASGTFGVRLELPNPGGRVPAGIKCRVRF 162
            V+G + ARVT+VD+V+DAASGTFGVRLE+PNPG R+PAG+KC+VRF
Sbjct:  224 VSGLYAARVTVVDRVVDAASGTFGVRLEMPNPGYRLPAGLKCKVRF 269
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BLAST of mRNA_P-wetherbeei_contig15997.1.1 vs. uniprot
Match: A0A1F7N731_9BACT (HlyD_D23 domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_73_26 TaxID=1802102 RepID=A0A1F7N731_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 1.120e-15
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    4 DVRFQPMVAGSFRARVTLVDKVIDAASGTFGVRLELPNPGGRVPAGIKCRVRFSAK 171
            DV  +  V GS+RARVT+VD+V+DAASGTF VRLEL NP  R+PAG+KC+VRF ++
Sbjct:  219 DVMPEAPVGGSYRARVTVVDRVVDAASGTFAVRLELANPQYRLPAGLKCKVRFPSR 274
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BLAST of mRNA_P-wetherbeei_contig15997.1.1 vs. uniprot
Match: A0A848HBA3_9BURK (Efflux RND transporter periplasmic adaptor subunit n=2 Tax=Ramlibacter agri TaxID=2728837 RepID=A0A848HBA3_9BURK)

HSP 1 Score: 77.0 bits (188), Expect = 1.440e-15
Identity = 35/46 (76.09%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   25 VAGSFRARVTLVDKVIDAASGTFGVRLELPNPGGRVPAGIKCRVRF 162
            VAG++R+ V++VD+VIDAASGTFGVRLELPN  GRVPAG++CRVRF
Sbjct:  221 VAGTYRSTVSVVDRVIDAASGTFGVRLELPNREGRVPAGMRCRVRF 266
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BLAST of mRNA_P-wetherbeei_contig15997.1.1 vs. uniprot
Match: UPI001F1A45CE (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Pelomonas sp. P7 TaxID=2906763 RepID=UPI001F1A45CE)

HSP 1 Score: 75.9 bits (185), Expect = 3.970e-15
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   25 VAGSFRARVTLVDKVIDAASGTFGVRLELPNPGGRVPAGIKCRVRF 162
            + G + A VT+VD+V+DAASGTFGVRLELPNP G +PAGIKCR RF
Sbjct:  223 LTGRYTATVTIVDRVVDAASGTFGVRLELPNPKGEIPAGIKCRARF 268
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15997.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F1VYT1_9BURK4.290e-2066.67Secretion protein HlyD n=1 Tax=Oxalobacteraceae ba... [more]
UPI001CF8B20D2.710e-1970.37efflux RND transporter periplasmic adaptor subunit... [more]
A0A845TPJ5_9BURK1.400e-1866.67Efflux RND transporter periplasmic adaptor subunit... [more]
UPI001E5613D31.060e-1762.96efflux RND transporter periplasmic adaptor subunit... [more]
A0A519J5Y7_9GAMM1.680e-1662.50Efflux RND transporter periplasmic adaptor subunit... [more]
A0A4Q5P9A0_9BURK3.320e-1664.81Efflux RND transporter periplasmic adaptor subunit... [more]
A0A1Q7EGN2_9BACT3.970e-1673.91Efflux transporter periplasmic adaptor subunit n=2... [more]
A0A1F7N731_9BACT1.120e-1564.29HlyD_D23 domain-containing protein n=1 Tax=Candida... [more]
A0A848HBA3_9BURK1.440e-1576.09Efflux RND transporter periplasmic adaptor subunit... [more]
UPI001F1A45CE3.970e-1571.74efflux RND transporter periplasmic adaptor subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15997contigP-wetherbeei_contig15997:2..175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1192759.AKIB01000028_gene2022
PFAMsHlyD_D23
Model size174
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.56e-14
EggNOG OGsCOG0845@1|root,COG0845@2|Bacteria,1RC4B@1224|Proteobacteria,2U65Q@28211|Alphaproteobacteria
DescriptionBelongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Cds size153
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186073.6354437-UTR-P-wetherbeei_contig15997:1..221683186073.6354437-UTR-P-wetherbeei_contig15997:1..22Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15997 2..22 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186073.6460867-CDS-P-wetherbeei_contig15997:22..1751683186073.6460867-CDS-P-wetherbeei_contig15997:22..175Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15997 23..175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15997.1.1prot_P-wetherbeei_contig15997.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15997 23..175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15997.1.1

>prot_P-wetherbeei_contig15997.1.1 ID=prot_P-wetherbeei_contig15997.1.1|Name=mRNA_P-wetherbeei_contig15997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
MVAGSFRARVTLVDKVIDAASGTFGVRLELPNPGGRVPAGIKCRVRFSAK
*
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mRNA from alignment at P-wetherbeei_contig15997:2..175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15997.1.1 ID=mRNA_P-wetherbeei_contig15997.1.1|Name=mRNA_P-wetherbeei_contig15997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig15997:2..175+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGACGTGCGCTTCCAGCCGATGGTCGCGGGGAGCTTCCGCGCGCGCGT
GACGCTCGTCGACAAGGTGATCGACGCCGCCAGCGGTACGTTCGGCGTGC
GGCTGGAACTGCCCAATCCCGGCGGCCGGGTCCCGGCCGGGATCAAGTGC
AGGGTCCGCTTCTCGGCGAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15997:2..175+

>mRNA_P-wetherbeei_contig15997.1.1 ID=mRNA_P-wetherbeei_contig15997.1.1|Name=mRNA_P-wetherbeei_contig15997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig15997:2..175+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGCGGGGAGCTTCCGCGCGCGCGTGACGCTCGTCGACAAGGTGAT
CGACGCCGCCAGCGGTACGTTCGGCGTGCGGCTGGAACTGCCCAATCCCG
GCGGCCGGGTCCCGGCCGGGATCAAGTGCAGGGTCCGCTTCTCGGCGAAG
TAG
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