mRNA_P-wetherbeei_contig15979.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15979.1.1
Unique NamemRNA_P-wetherbeei_contig15979.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15979.1.1 vs. uniprot
Match: A0A836CK93_9STRA (Heat shock protein 40 like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK93_9STRA)

HSP 1 Score: 146 bits (368), Expect = 5.150e-39
Identity = 87/142 (61.27%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 RKDYYKILCVERGATEDEIKKAYRKAALKWHPDKQGGKSEVEREEAEKVFRDVGEAYEVLSDAAKKQRYDSGVDLEDLDNPYAGHGHSHGGGYRNGGFGGXGGAHY----------DPSVLFHMFSQQQ---GFGGARGGPG 387
            RKDYYKIL V+R A E+ IKKAYRKAALKWHPD+Q GK E ER EAEKVFR+V +AYEVLSD AKK RYDSGVDLEDLDNPYAGHG                  H           DP+VLF MF QQQ   G GG RG  G
Sbjct:  381 RKDYYKILGVQRDADEETIKKAYRKAALKWHPDRQNGKEETERAEAEKVFREVNDAYEVLSDPAKKNRYDSGVDLEDLDNPYAGHG-----------------GHXXXXXXXXXXIDPNVLFQMFMQQQAQAGRGGRRGSGG 505          
BLAST of mRNA_P-wetherbeei_contig15979.1.1 vs. uniprot
Match: A0A7S2UUT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUT7_9STRA)

HSP 1 Score: 139 bits (351), Expect = 8.760e-38
Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 RKDYYKILCVERGATEDEIKKAYRKAALKWHPDKQGGKSEVEREEAEKVFRDVGEAYEVLSDAAKKQRYDSGVDLEDLDNPYAGHGHSHGGGYRNGGFGGXGGAHYDPSVLFHMFSQQQGFGGARGGPG 387
            RKDYYK+L V++ A E EIKKAYRK ALKWHPD+   KS+ E+ +AEK+F+DVGEAYEVLSD+ K+QRYD+GVDLEDLDNP+AGH     GG+             DP+VLF MF QQ G  G  GG G
Sbjct:  220 RKDYYKLLGVQKDAEEAEIKKAYRKLALKWHPDRHTTKSDEEKHKAEKMFKDVGEAYEVLSDSTKRQRYDAGVDLEDLDNPHAGHXXXXXGGFHG----------MDPNVLFQMFMQQGGGMGGFGGGG 338          
BLAST of mRNA_P-wetherbeei_contig15979.1.1 vs. uniprot
Match: A0A6H5LKM9_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LKM9_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 5.800e-37
Identity = 76/118 (64.41%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 RKDYYKILCVERGATEDEIKKAYRKAALKWHPDKQGGKSEVEREEAEKVFRDVGEAYEVLSDAAKKQRYDSGVDLEDLDNPYAGHGHSHGGGYRNGGFGGXGGAHYDPSVLFHMFSQQ 354
            RKDYYK+L V R A + EIKKAYRKAALK+HPD+Q  KS+ E+E+A KVFRD+ EAYEVLSD  KK RYDSGVDLEDLDNP+AGHG  HGG               DPS+LF MF QQ
Sbjct:  418 RKDYYKLLGVSRSADDAEIKKAYRKAALKYHPDRQSSKSDEEKEQAGKVFRDIAEAYEVLSDPTKKGRYDSGVDLEDLDNPHAGHGQGHGG------------MEIDPSMLFQMFMQQ 523          
BLAST of mRNA_P-wetherbeei_contig15979.1.1 vs. uniprot
Match: A0A7S1YQJ9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YQJ9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.950e-33
Identity = 71/120 (59.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 RKDYYKILCVERGATEDEIKKAYRKAALKWHPDKQGGKSEVEREEAEKVFRDVGEAYEVLSDAAKKQRYDSGVDLEDLDNPYAGHGHSHGGGYRNGGFGGXGGAHYDPSVLFHMFSQQQG 360
            RKD+YKIL V R AT+ EIKK+YRK ALKWHPD+ G  +E ++++AE+ FRDV  AYEVLSD  KKQRYD GV+ +DLDNP     H+  GG+  GG GG      DP+VLF MF QQQG
Sbjct:  160 RKDFYKILGVTRDATDAEIKKSYRKKALKWHPDRHGNSTEEQKKKAEETFRDVNLAYEVLSDPQKKQRYDEGVEEQDLDNP-----HARPGGHDMGGHGGI-----DPNVLFQMFMQQQG 269          
BLAST of mRNA_P-wetherbeei_contig15979.1.1 vs. uniprot
Match: A0A7S2SJZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJZ2_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.330e-32
Identity = 71/123 (57.72%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 RKDYYKILCVERGATEDEIKKAYRKAALKWHPDKQGGKSEVEREEAEKVFRDVGEAYEVLSDAAKKQRYDSGVDLEDLDNPYAGHGHSHGGGYRNGGFGGXGGAHYDPSVLFHMFSQQQGFGG 369
            R D YK+L V + +TEDEI+KAYRKAALKWHPD+   KSE E+  AEKVF+D+  A+EVL DA KK+RYDSGV++ED+D+P+AGHG  HGG      FGG G +  D   L  MF  Q G GG
Sbjct:  401 RLDLYKLLGVSKDSTEDEIRKAYRKAALKWHPDRHSSKSEEEKSNAEKVFKDINLAFEVLGDAEKKKRYDSGVEIEDIDDPHAGHGRGHGG------FGGGGMSQED---LLRMFMAQHGGGG 514          
BLAST of mRNA_P-wetherbeei_contig15979.1.1 vs. uniprot
Match: A0A6U2E5P0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2E5P0_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.520e-31
Identity = 72/124 (58.06%), Postives = 87/124 (70.16%), Query Frame = 1
Query:    1 RKDYYKILCVERGATEDEIKKAYRKAALKWHPDKQGGKSEVEREEAEKVFRDVGEAYEVLSDAAKKQRYDSGVDLEDLDNPYA----GHGHSHGGGYRNGGFGGXGGAHYDPSVLFHMFSQQQG 360
            RKD+YK+L V R ATE EIKK+YRK ALKWHPD+    ++ E+++AE+VFRDV  AYEVLSD  KK+RYD GVD +DLDNP+A    G G  HG    +GG GG      DP +LF MF QQQG
Sbjct:  427 RKDFYKVLDVSRDATESEIKKSYRKLALKWHPDRHSSSTDEEKKKAEQVFRDVNLAYEVLSDPQKKRRYDEGVDEQDLDNPHARPDDGTGSMHG----HGGMGGL-----DPEMLFQMFMQQQG 541          
BLAST of mRNA_P-wetherbeei_contig15979.1.1 vs. uniprot
Match: A0A7S0GMX5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GMX5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.680e-31
Identity = 72/118 (61.02%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    1 RKDYYKILCVERGATEDEIKKAYRKAALKWHPDKQGGKSEVEREEAEKVFRDVGEAYEVLSDAAKKQRYDSGVDLEDLDNPYAGHGHSHGGGYRNGGFGGXGGAHYDPSVLFHMFSQQ 354
            RKD+YKIL V R A E EIKKAYRK ALK+HPD+Q   +E E+++AE +FRDV  AYEVLSD  KK+RYDSGVD +DLDNP A      GGG+ +GG GG      DP+VLF MF QQ
Sbjct:  392 RKDFYKILGVARDADESEIKKAYRKMALKFHPDRQASGTEEEKQKAEVIFRDVNHAYEVLSDQEKKRRYDSGVDEQDLDNPNA----RPGGGHDHGGMGGI-----DPNVLFQMFMQQ 500          
BLAST of mRNA_P-wetherbeei_contig15979.1.1 vs. uniprot
Match: A0A7S1C252_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C252_9STRA)

HSP 1 Score: 119 bits (298), Expect = 6.700e-29
Identity = 64/115 (55.65%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    1 RKDYYKILCVERGATEDEIKKAYRKAALKWHPDKQGGKSEVEREEAEKVFRDVGEAYEVLSDAAKKQRYDSGVDLEDLDNPYAGHGHSHGGGYRNGGFGGXGGAHYDPSVLFHMF 345
            RKDYYKIL V R A +D++KKAYRK ALKWHPD+  GK E  ++ AE  F++VGEAY VLSDA K++RYD+GVD+EDLDN +AG G  HG                DP+ LF MF
Sbjct:  435 RKDYYKILGVARDANDDQLKKAYRKGALKWHPDRHSGKDESAKKHAEHQFKEVGEAYAVLSDAGKRRRYDAGVDIEDLDNEHAGAGGMHG---------------MDPNDLFSMF 534          
BLAST of mRNA_P-wetherbeei_contig15979.1.1 vs. uniprot
Match: A0A4D9DHL1_9STRA (J domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHL1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 7.250e-29
Identity = 74/126 (58.73%), Postives = 86/126 (68.25%), Query Frame = 1
Query:    1 RKDYYKILCVERGATEDEIKKAYRKAALKWHPDKQGGKSEVEREEAEKVFRDVGEAYEVLSDAAKKQRYDSGVDLEDLDNPYAGHGHSHGGGYRNGGFGGXGGAHYDPSVLFHMFSQQQGFGGARG 378
            RKD Y+IL +   ATEDEI+KAYRK ALK HPD+    SE  +  AEK F+DV EAYEVLSD  K+ RYDSG D+EDLDNP+A  G +H GG+  G    X G   DP+VLF MF QQQ  GG RG
Sbjct:  389 RKDLYRILGLSTDATEDEIRKAYRKLALKHHPDRHTNSSEEAKAAAEKAFKDVAEAYEVLSDKEKRSRYDSGTDVEDLDNPHAQAG-THAGGF--GXXXXXXGI--DPNVLFQMFMQQQAMGGGRG 509          
BLAST of mRNA_P-wetherbeei_contig15979.1.1 vs. uniprot
Match: G4YV87_PHYSP (J domain-containing protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=G4YV87_PHYSP)

HSP 1 Score: 116 bits (290), Expect = 3.820e-28
Identity = 59/86 (68.60%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    1 RKDYYKILCVERGATEDEIKKAYRKAALKWHPDKQGGKSEVEREEAEKVFRDVGEAYEVLSDAAKKQRYDSGVDLEDLDNPYAGHG 258
            RKDYYKIL V + ATE EIKKAY++ ALK+HPD+  GKSE ++ EAE  F+D+GEAY VLSDA K+QRYDSGVDLEDLDN + G G
Sbjct:  312 RKDYYKILNVSQSATEAEIKKAYKRLALKFHPDRHAGKSEEQKAEAEAAFKDIGEAYAVLSDAQKRQRYDSGVDLEDLDNDFGGGG 397          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15979.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CK93_9STRA5.150e-3961.27Heat shock protein 40 like protein n=1 Tax=Tribone... [more]
A0A7S2UUT7_9STRA8.760e-3859.69Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5LKM9_9PHAE5.800e-3764.41J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A7S1YQJ9_9STRA2.950e-3359.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2SJZ2_9STRA6.330e-3257.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U2E5P0_9STRA3.520e-3158.06Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0GMX5_9STRA5.680e-3161.02Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1C252_9STRA6.700e-2955.65Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A4D9DHL1_9STRA7.250e-2958.73J domain-containing protein n=2 Tax=Monodopsidacea... [more]
G4YV87_PHYSP3.820e-2868.60J domain-containing protein n=21 Tax=Peronosporace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15979contigP-wetherbeei_contig15979:721..1547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNP6
PFAMsCastor_Poll_mid,Cupin_8,DnaJ,HSF_DNA-bind,SWIB,TPR_1,TPR_16,TPR_19,TPR_2,TPR_8
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K09527
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.75e-38
EggNOG OGsCOG0484@1|root,KOG0550@2759|Eukaryota
Descriptionchaperone cofactor-dependent protein refolding
Cds size387
COG categoryO
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186073.260284-CDS-P-wetherbeei_contig15979:720..9631683186073.260284-CDS-P-wetherbeei_contig15979:720..963Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15979 721..963 -
1683186073.2716103-CDS-P-wetherbeei_contig15979:1157..12041683186073.2716103-CDS-P-wetherbeei_contig15979:1157..1204Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15979 1158..1204 -
1683186073.2791564-CDS-P-wetherbeei_contig15979:1450..15471683186073.2791564-CDS-P-wetherbeei_contig15979:1450..1547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15979 1451..1547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15979.1.1prot_P-wetherbeei_contig15979.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15979 721..1547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15979.1.1

>prot_P-wetherbeei_contig15979.1.1 ID=prot_P-wetherbeei_contig15979.1.1|Name=mRNA_P-wetherbeei_contig15979.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
RKDYYKILCVERGATEDEIKKAYRKAALKWHPDKQGGKSEVEREEAEKVF
RDVGEAYEVLSDAAKKQRYDSGVDLEDLDNPYAGHGHSHGGGYRNGGFGG
GGGAHYDPSVLFHMFSQQQGFGGARGGPG
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mRNA from alignment at P-wetherbeei_contig15979:721..1547-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15979.1.1 ID=mRNA_P-wetherbeei_contig15979.1.1|Name=mRNA_P-wetherbeei_contig15979.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=827bp|location=Sequence derived from alignment at P-wetherbeei_contig15979:721..1547- (Phaeothamnion wetherbeei SAG_119_79)
CGGAAGGACTACTACAAGATCCTGTGCGTGGAGCGGGGAGCGACGGAGGA TGAGATCAAGAAGGCGTATCGAAAGGCCGCCCTGAAGTGGCATCCCGGTC AGTCTCGACCGGCCTTGTATGTTTTTGGCCCTGTTGAATTGTGTTTCATT GCCTGGCGAAGACTGATGCAGGCATTTTCAGATTCAATGACGATGCGCAG TGGCAAAGTCCCACTGTGCTGGTTGTGACGGACAAGTCCACGTTTTGACG TCCGGTTGGCCATAAACTATGGCATAACGCTGTTCCTTCTTCCGTGGTTC TTGCTGCTGCCCGCCTTCCCATGAAAACCTCATCATTCTGCAGACAAACA GGGCGGAAAAAGCGAAGTAGAGCGGGAGGAAGCGGAGAAGGTGAGGAAAA TTTATACTTCGTAAGGAGGCAGAAAAGGGACCGCCGGCCGAGGCGACGGC AGCAGCGGCGGCGATGGTTGCCGCTGCTTGTTTGTATAACAGGTCGAAGC CGCCTCGGTTCTCGCAAGACGTCGATCCAAACGCCTAACGGTTCTGACTG ACCCGACCAATCGAACCGCATGATCTGCCTGCAGGTGTTCCGTGATGTGG GGGAGGCGTACGAGGTGCTGAGCGACGCGGCGAAGAAGCAGCGCTACGAC AGCGGTGTCGACCTTGAGGACCTCGACAACCCCTACGCCGGCCACGGCCA CAGCCACGGCGGCGGCTACCGCAACGGCGGCTTCGGGGGCGGTGGCGGCG CGCACTACGACCCATCGGTGCTCTTCCACATGTTCTCGCAACAGCAGGGG TTCGGCGGCGCGCGGGGCGGGCCCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15979:721..1547-

>mRNA_P-wetherbeei_contig15979.1.1 ID=mRNA_P-wetherbeei_contig15979.1.1|Name=mRNA_P-wetherbeei_contig15979.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig15979:721..1547- (Phaeothamnion wetherbeei SAG_119_79)
CGGAAGGACTACTACAAGATCCTGTGCGTGGAGCGGGGAGCGACGGAGGA
TGAGATCAAGAAGGCGTATCGAAAGGCCGCCCTGAAGTGGCATCCCGACA
AACAGGGCGGAAAAAGCGAAGTAGAGCGGGAGGAAGCGGAGAAGGTGTTC
CGTGATGTGGGGGAGGCGTACGAGGTGCTGAGCGACGCGGCGAAGAAGCA
GCGCTACGACAGCGGTGTCGACCTTGAGGACCTCGACAACCCCTACGCCG
GCCACGGCCACAGCCACGGCGGCGGCTACCGCAACGGCGGCTTCGGGGGC
GGTGGCGGCGCGCACTACGACCCATCGGTGCTCTTCCACATGTTCTCGCA
ACAGCAGGGGTTCGGCGGCGCGCGGGGCGGGCCCGGT
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