mRNA_P-wetherbeei_contig15955.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15955.1.1
Unique NamemRNA_P-wetherbeei_contig15955.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15955.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15955contigP-wetherbeei_contig15955:4..1483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1286
Hectar predicted targeting categoryother localisation
Exons2
Cds size897
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.6924736-CDS-P-wetherbeei_contig15955:3..9001683186072.6924736-CDS-P-wetherbeei_contig15955:3..900Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15955 4..900 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.7035134-UTR-P-wetherbeei_contig15955:900..9891683186072.7035134-UTR-P-wetherbeei_contig15955:900..989Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15955 901..989 +
1683186072.7141845-UTR-P-wetherbeei_contig15955:1185..14831683186072.7141845-UTR-P-wetherbeei_contig15955:1185..1483Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15955 1186..1483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15955.1.1prot_P-wetherbeei_contig15955.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15955 4..900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15955.1.1

>prot_P-wetherbeei_contig15955.1.1 ID=prot_P-wetherbeei_contig15955.1.1|Name=mRNA_P-wetherbeei_contig15955.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=299bp
VRATVGVGGAPLGYPPHATAATAGAATAAVGQLSRSPTDAAALAAAAGPR
GSPQERHGDAARRRQPQQGRSPPALPGHGRSGSAAGVAGSSPTGALLHYH
SGGSGGAGFSAAGDDLAAAVAAAAAAEEAEAARRREAERIVRRAARCHET
LSVALEWLEEMRRQAQHEEGEFRLAAASSAALAMRVPGEPAATAVAAASA
SAAAAAGATAVPAARGSEPAASAQSGASRGESASRSGGQRRGGGNGSGGG
GAAEAAAPTHTGGRGQDLRRSGSRPSHRRGGSGLHGGGSGTAAGSRRL*
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mRNA from alignment at P-wetherbeei_contig15955:4..1483+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15955.1.1 ID=mRNA_P-wetherbeei_contig15955.1.1|Name=mRNA_P-wetherbeei_contig15955.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1480bp|location=Sequence derived from alignment at P-wetherbeei_contig15955:4..1483+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGGGCGACCGTCGGCGTCGGTGGGGCGCCGCTCGGCTACCCGCCGCA
TGCTACTGCCGCCACCGCCGGCGCGGCGACAGCGGCGGTGGGACAGCTGA
GCCGTTCGCCGACGGATGCGGCGGCTTTAGCGGCGGCGGCAGGGCCGCGG
GGCTCGCCGCAGGAGCGGCACGGCGACGCTGCGCGGAGAAGGCAGCCACA
GCAGGGGCGCTCCCCACCGGCGCTGCCTGGCCACGGGCGGTCCGGGTCTG
CCGCCGGTGTGGCCGGCAGCTCTCCGACCGGCGCCTTGCTGCACTACCAC
AGCGGCGGCAGCGGCGGCGCCGGCTTCTCCGCGGCGGGAGACGATTTGGC
AGCGGCGGTGGCAGCGGCCGCCGCGGCGGAGGAGGCAGAAGCGGCGAGGC
GGCGCGAGGCCGAACGGATCGTGCGCCGTGCCGCGCGCTGCCATGAGACG
TTATCCGTGGCGCTCGAGTGGCTGGAGGAGATGCGCCGCCAGGCGCAACA
TGAGGAGGGAGAATTCCGCCTCGCCGCGGCCTCCTCTGCCGCCCTTGCAA
TGCGGGTTCCTGGGGAGCCGGCGGCCACGGCGGTGGCGGCGGCTTCGGCC
TCGGCGGCGGCGGCAGCTGGTGCAACGGCGGTGCCGGCGGCGCGAGGATC
GGAACCTGCCGCCAGTGCCCAATCCGGTGCTTCTCGCGGCGAGTCGGCGA
GCCGGAGCGGTGGCCAACGCCGTGGCGGCGGCAACGGCAGCGGCGGTGGC
GGCGCAGCTGAGGCGGCGGCACCAACGCACACAGGCGGACGTGGGCAGGA
CTTGCGACGGTCCGGATCGCGGCCCAGCCACCGGCGGGGTGGATCTGGCC
TGCATGGCGGCGGCAGCGGTACTGCGGCCGGCAGCAGGCGGCTATAACTG
GCCGCTGCCGCCTCTGTGTACCCGTTCGCCGTTTCCTCATGTGCTGCGCC
GGTGTCACACGGCGCTGGCTGAAGAGCGTTCCCACTGTGAGTTTGCGGTG
TTATCTGTGTCTCCACTCTGGTTGCGGGTGCGGCCGCCATGTTGAGAATT
AATAGGATTTGAGCGCCGAGTACCGGTGCGGGCGGTCAACGCCGTGCATT
GCCTCGCGTCTCTTTTTGTTTCGCTACACACGGATTTATAATCTGTACAC
TGTACACAATATCTGCTTTGTCCTGAGGTTAGTTGTTGCGGTGGCTACGC
CGAGGCCAACATCTGGTGTTGCAGCCGCCGCCACCGAAACTGCGGCTGCT
ATGCACCGGGAGCAAGGGGCGGCGGCACGGCAAAGATTGTTAACCGCTAC
ATGGAACTGAGGGCTGAAATGGCATTGCACAAGGGGTGCAGGGGGCGATG
GGGGGCGCGCTGCCCCGCCAGGCGGGGATGGCCGGGCGATGCGGCGGCGG
CTACATGACAGTCGCAGACTGTTCGTCAATAAGTTCCGGCAATCAGCATG
CGGGAACAGCAGAGCACTGTAACTTTTCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15955:4..1483+

>mRNA_P-wetherbeei_contig15955.1.1 ID=mRNA_P-wetherbeei_contig15955.1.1|Name=mRNA_P-wetherbeei_contig15955.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=897bp|location=Sequence derived from alignment at P-wetherbeei_contig15955:4..1483+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGGGCGACCGTCGGCGTCGGTGGGGCGCCGCTCGGCTACCCGCCGCA
TGCTACTGCCGCCACCGCCGGCGCGGCGACAGCGGCGGTGGGACAGCTGA
GCCGTTCGCCGACGGATGCGGCGGCTTTAGCGGCGGCGGCAGGGCCGCGG
GGCTCGCCGCAGGAGCGGCACGGCGACGCTGCGCGGAGAAGGCAGCCACA
GCAGGGGCGCTCCCCACCGGCGCTGCCTGGCCACGGGCGGTCCGGGTCTG
CCGCCGGTGTGGCCGGCAGCTCTCCGACCGGCGCCTTGCTGCACTACCAC
AGCGGCGGCAGCGGCGGCGCCGGCTTCTCCGCGGCGGGAGACGATTTGGC
AGCGGCGGTGGCAGCGGCCGCCGCGGCGGAGGAGGCAGAAGCGGCGAGGC
GGCGCGAGGCCGAACGGATCGTGCGCCGTGCCGCGCGCTGCCATGAGACG
TTATCCGTGGCGCTCGAGTGGCTGGAGGAGATGCGCCGCCAGGCGCAACA
TGAGGAGGGAGAATTCCGCCTCGCCGCGGCCTCCTCTGCCGCCCTTGCAA
TGCGGGTTCCTGGGGAGCCGGCGGCCACGGCGGTGGCGGCGGCTTCGGCC
TCGGCGGCGGCGGCAGCTGGTGCAACGGCGGTGCCGGCGGCGCGAGGATC
GGAACCTGCCGCCAGTGCCCAATCCGGTGCTTCTCGCGGCGAGTCGGCGA
GCCGGAGCGGTGGCCAACGCCGTGGCGGCGGCAACGGCAGCGGCGGTGGC
GGCGCAGCTGAGGCGGCGGCACCAACGCACACAGGCGGACGTGGGCAGGA
CTTGCGACGGTCCGGATCGCGGCCCAGCCACCGGCGGGGTGGATCTGGCC
TGCATGGCGGCGGCAGCGGTACTGCGGCCGGCAGCAGGCGGCTATAA
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