mRNA_P-wetherbeei_contig15933.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15933.1.1
Unique NamemRNA_P-wetherbeei_contig15933.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15933.1.1 vs. uniprot
Match: A0A6H5L8Q2_9PHAE (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8Q2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.620e-17
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 SKRMRVATATSGQTNGLSSSLIFTPVQGLELVNPNA-AEERVRKANETWFSQNAGFASAKPK 183
            SK+++VA  +SGQTNGL+SSL+FTP+QGLELVNPNA  E++V  AN+ WF  ++GF SAKPK
Sbjct:  490 SKKLKVANLSSGQTNGLNSSLVFTPIQGLELVNPNADKEKKVMAANKKWFDSSSGFMSAKPK 551
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BLAST of mRNA_P-wetherbeei_contig15933.1.1 vs. uniprot
Match: K0RKK1_THAOC (Nop domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RKK1_THAOC)

HSP 1 Score: 82.0 bits (201), Expect = 9.400e-17
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    7 RMRVATATSGQTNGLSSSLIFTPVQGLELVNPNAAEERVRKANETWFSQNAGFASAKPK 183
            R R    +SG TNGL+SS++FTPVQGLELVNP+A +ERVRKAN  WFS+ AGF SA PK
Sbjct:  977 RKRAVQMSSGTTNGLASSMVFTPVQGLELVNPDANKERVRKANAKWFSEMAGFESALPK 1035
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BLAST of mRNA_P-wetherbeei_contig15933.1.1 vs. uniprot
Match: A0A7S2XZL3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.590e-16
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    4 KRMRVATATSGQTNGLSSSLIFTPVQGLELVNPNAAEERVRKANETWFSQNAGFASAKP 180
            ++ +V+T +SG TNGL+SSL+FTP+QG+ELVNPNA  E+V  AN+ WF+ N+GF SAKP
Sbjct:  394 RKRKVSTLSSGATNGLASSLVFTPIQGIELVNPNAQAEKVAAANKKWFNANSGFMSAKP 452
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BLAST of mRNA_P-wetherbeei_contig15933.1.1 vs. uniprot
Match: B8C5F2_THAPS (Nop domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5F2_THAPS)

HSP 1 Score: 80.1 bits (196), Expect = 4.320e-16
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    7 RMRVATATSGQTNGLSSSLIFTPVQGLELVNPNAAEERVRKANETWFSQNAGFASAKPK 183
            R R    +SG TNGL+SS++FTPVQGLELVNP+A +ERVR AN  WF  NAGF SA PK
Sbjct:  442 RKRAIQMSSGATNGLASSMVFTPVQGLELVNPDANKERVRAANAKWFQSNAGFQSALPK 500
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BLAST of mRNA_P-wetherbeei_contig15933.1.1 vs. uniprot
Match: A0A836CKH5_9STRA (Nop domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.330e-16
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    4 KRMRVATATSGQTNGLSSSLIFTPVQGLELVNPNAAEE-RVRKANETWFSQNAGFASAKPK 183
            K++R+A  +SG TNGLSSS+IFTPVQG+ELVNPNA +E +V+ AN  WF   +GF SAKPK
Sbjct:  443 KKLRMAAVSSGNTNGLSSSIIFTPVQGIELVNPNADKEAKVKAANAKWFDTTSGFMSAKPK 503
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BLAST of mRNA_P-wetherbeei_contig15933.1.1 vs. uniprot
Match: A0A7S0BZY3_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZY3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.900e-16
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    7 RMRVATATSGQTNGLSSSLIFTPVQGLELVNPNAAEERVRKANETWFSQNAGFASAKPK 183
            R +    +SG TNGL+SS++FTPVQGLELVNPNA  +RV +AN  WF +NAGF SA PK
Sbjct:  215 RKKALQLSSGTTNGLASSMVFTPVQGLELVNPNANRDRVNEANLKWFGENAGFRSALPK 273
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BLAST of mRNA_P-wetherbeei_contig15933.1.1 vs. uniprot
Match: A0A7S2C7I0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.840e-14
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    7 RMRVATATSGQTNGLSSSLIFTPVQGLELVNPNAAEERVRKANETWFSQNAGFASAKP 180
            + R    +SG TNGLSSSL+FTPVQGLEL NP A E +V  AN+ WFSQ+ GF SAKP
Sbjct:  436 KKRAIQMSSGATNGLSSSLVFTPVQGLELANPTANEAKVSDANKKWFSQSNGFLSAKP 493
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BLAST of mRNA_P-wetherbeei_contig15933.1.1 vs. uniprot
Match: A0A7S1D1F3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1F3_CYCTE)

HSP 1 Score: 73.6 bits (179), Expect = 2.390e-14
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   13 RVATATSGQTNGLSSSLIFTPVQGLELVNPNAAEERVRKANETWFSQNAGFASAKPK 183
            ++A      +NGL+SS++FTPVQG+ELV+P A +ERVR+AN  WF++NAGF SA PK
Sbjct:  182 QMAAQAKSSSNGLASSMVFTPVQGMELVDPEANKERVREANRKWFTENAGFQSALPK 238
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BLAST of mRNA_P-wetherbeei_contig15933.1.1 vs. uniprot
Match: W7U652_9STRA (U4 u6 small nuclear ribonucleoprotein prp31 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U652_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.890e-14
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   31 SGQTNGLSSSLIFTPVQGLELVNPNAAEE---RVRKANETWFSQNAGFASAKPK 183
            SG TNG++SSL+FTP QGLEL+NP AAEE   RV +AN++WF  ++GF SAKP+
Sbjct:   57 SGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110
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BLAST of mRNA_P-wetherbeei_contig15933.1.1 vs. uniprot
Match: A0A7S2SGM8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGM8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.560e-13
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   31 SGQTNGLSSSLIFTPVQGLELV--NPNAAEERVRKANETWFSQNAGFASAKPK 183
            SG TNGLSSSL+FTPVQGLEL   +  A E RV++AN+ WFSQ++GF SA+PK
Sbjct:  188 SGATNGLSSSLVFTPVQGLELAAEDTGAREARVKEANQKWFSQSSGFMSARPK 240
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15933.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8Q2_9PHAE3.620e-1764.52Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
K0RKK1_THAOC9.400e-1767.80Nop domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2XZL3_9STRA1.590e-1661.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8C5F2_THAPS4.320e-1666.10Nop domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A836CKH5_9STRA4.330e-1663.93Nop domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S0BZY3_9STRA6.900e-1662.71Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A7S2C7I0_9STRA1.840e-1463.79Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1D1F3_CYCTE2.390e-1457.89Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
W7U652_9STRA2.890e-1462.96U4 u6 small nuclear ribonucleoprotein prp31 n=1 Ta... [more]
A0A7S2SGM8_9STRA3.560e-1366.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15933contigP-wetherbeei_contig15933:46..231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0RKK1
PFAMsNop,Prp31_C
Model size186
Max annot lvl2836|Bacillariophyta
KEGG koko:K12844
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.35e-17
EggNOG OGsCOG1498@1|root,KOG2574@2759|Eukaryota,2XBAG@2836|Bacillariophyta
DescriptionPrp31 C terminal domain
Cds size177
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.9268615-UTR-P-wetherbeei_contig15933:45..541683186071.9268615-UTR-P-wetherbeei_contig15933:45..54Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15933 46..54 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.9511065-CDS-P-wetherbeei_contig15933:54..2311683186071.9511065-CDS-P-wetherbeei_contig15933:54..231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15933 55..231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15933.1.1prot_P-wetherbeei_contig15933.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15933 55..231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15933.1.1

>prot_P-wetherbeei_contig15933.1.1 ID=prot_P-wetherbeei_contig15933.1.1|Name=mRNA_P-wetherbeei_contig15933.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
MRVATATSGQTNGLSSSLIFTPVQGLELVNPNAAEERVRKANETWFSQNA
GFASAKPK*
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mRNA from alignment at P-wetherbeei_contig15933:46..231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15933.1.1 ID=mRNA_P-wetherbeei_contig15933.1.1|Name=mRNA_P-wetherbeei_contig15933.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig15933:46..231+ (Phaeothamnion wetherbeei SAG_119_79)
AGCAAGCGGATGCGCGTGGCGACGGCGACGTCGGGGCAGACGAACGGCCT
GTCGTCCAGTCTCATCTTCACCCCCGTGCAAGGGCTCGAGCTCGTCAACC
CCAACGCGGCCGAGGAGCGCGTCCGCAAGGCCAACGAGACATGGTTCAGC
CAGAACGCTGGCTTCGCCTCTGCAAAGCCCAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15933:46..231+

>mRNA_P-wetherbeei_contig15933.1.1 ID=mRNA_P-wetherbeei_contig15933.1.1|Name=mRNA_P-wetherbeei_contig15933.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig15933:46..231+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTGGCGACGGCGACGTCGGGGCAGACGAACGGCCTGTCGTCCAG
TCTCATCTTCACCCCCGTGCAAGGGCTCGAGCTCGTCAACCCCAACGCGG
CCGAGGAGCGCGTCCGCAAGGCCAACGAGACATGGTTCAGCCAGAACGCT
GGCTTCGCCTCTGCAAAGCCCAAGTGA
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