mRNA_P-wetherbeei_contig15930.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15930.1.1
Unique NamemRNA_P-wetherbeei_contig15930.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15930.1.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.710e-36
Identity = 79/156 (50.64%), Postives = 103/156 (66.03%), Query Frame = 1
Query:   13 REAARRLFDAEVAAWELRRARKQTGDDKWLAQVLRAGTLSDRVAALTLQVQESPPHRLAALDKLVDMAAQKDRRAAQLSLEALQDLFCSVLLPDGRRLARFEARGPRQL---------------GEALRWAER---DPTG--VGKALVLWHFEDEV 420
            R A + L +AEVAAW  +R R  +GDDKW+AQVLR GTLSD+VAALTLQVQESP HRLA LD L+D+  +K+RR AQ++LEAL+DLF + LLPD R+L  FE R   Q                G+++    R    P G   GKAL++W++ED++
Sbjct:  235 RAAGKALLEAEVAAWTAQRERHASGDDKWVAQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFETRPLLQALASVTEEGNKGQGGGGDSVPGGGRGVNSPGGKAAGKALLMWYYEDQI 390          
BLAST of mRNA_P-wetherbeei_contig15930.1.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.420e-35
Identity = 73/140 (52.14%), Postives = 99/140 (70.71%), Query Frame = 1
Query:    1 VQRLREAARRLFDAEVAAWELRRARKQTGDDKWLAQVLRAGTLSDRVAALTLQVQESPPHRLAALDKLVDMAAQKDRRAAQLSLEALQDLFCSVLLPDGRRLARFEARGPRQLGEALRWAERDPTGVGKALVLWHFEDEV 420
            V+RLR+AA  L   EVAAW+    ++QTGDD++L+QVL++GTLSD+++ALT++ +ESP HRLA LDKLV++A + DRR AQ++ EAL+DLF S LLPD RRL  F  R   Q  E   WA        K L++W+FE E+
Sbjct:  203 VRRLRDAAAALLAKEVAAWDHGAEKRQTGDDRYLSQVLKSGTLSDKISALTMRCKESPVHRLADLDKLVELATKHDRRTAQMAQEALKDLFISDLLPDERRLVPFRERPLLQFEE---WAPNFKEQAAKTLLMWYFEGEL 339          
BLAST of mRNA_P-wetherbeei_contig15930.1.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.300e-30
Identity = 77/168 (45.83%), Postives = 97/168 (57.74%), Query Frame = 1
Query:   13 REAARRLFDAEVAAWELRRARKQTGDDKWLAQV------------------LRAGTLSDRVAALTLQVQESPPHRLAALDKLVDMAAQKDRRAAQLSLEALQDLFCSVLLPDGRRLARFEARGPRQL---------------GEALRWAERDPTG-----VGKALVLW 402
            R A + L +AEVAAW  +R R  +GDDKW+AQV                  LR GTLSD+VAALTLQVQESP HRLA LD L+D+  +K+RR AQ++LEAL+DLF + LLPD R+L  FE+R   Q                GE++    R   G      GKAL++W
Sbjct:    6 RAAGKALLEAEVAAWTAQRERHASGDDKWVAQVQSLGKHMELRRIVPRTWVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESRPLLQALASVTEEGNKGQGGGGESVPEGGRGVNGPRGKAAGKALLMW 173          
BLAST of mRNA_P-wetherbeei_contig15930.1.1 vs. uniprot
Match: UPI001B88E77C (CCAAT/enhancer-binding protein zeta-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88E77C)

HSP 1 Score: 108 bits (270), Expect = 1.010e-24
Identity = 60/141 (42.55%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    1 VQRLREAARRLFDAEVAAWELRRARKQTGDDKWLAQVLRAGTLSDRVAALTLQVQESPPHRLAALDKLVDMAAQKDRRAAQLSLEALQDLFCSVLLPDGRRLARFEARGPRQLGEALRWAERDPTGVGKALVLWHFEDEVR 423
            VQ++ E A +L   EVA +  +R   +  + KWL  VL +GTLSD+VAALTL  QESP H L++++ L++M  +K RR + + ++ L+DLF S LLPD R+L  F ++ P    + L    RD   V K L+LWHFE +++
Sbjct:  178 VQKMEEFASKLLQDEVALYNKQRENSRRSEAKWLKTVLGSGTLSDKVAALTLLAQESPVHSLSSIESLLNMCKKKGRRESTMGVDTLRDLFLSDLLPDNRKLKTF-SQHPLLSVDELSSGNRDV--VDKKLILWHFESKLK 315          
BLAST of mRNA_P-wetherbeei_contig15930.1.1 vs. uniprot
Match: A0A2B4RPP4_STYPI (CCAAT/enhancer-binding protein zeta n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RPP4_STYPI)

HSP 1 Score: 106 bits (264), Expect = 6.740e-24
Identity = 57/145 (39.31%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    1 VQRLREAARRLFDAEVAAWELRRARKQTGDDKWLAQVLRAGTLSDRVAALTLQVQESPPHRLAALDKLVDMAAQKDRRAAQLSLEALQDLFCSVLLPDGRRLARFEARGPRQLGEALR----WAERDPTGVGKALVLWHFEDEVR 423
            V RL + A  LF+ EV  ++  +A++++ D +WL  V+ +GTL+D+VAALT+QVQES  H L  LD L+ MA +K RR + ++++ L++L+ ++LLP+ R+L +F       L E +     W ERD     K L+LW+FE++++
Sbjct:  185 VMRLSKEAADLFEQEVGIYDKMKAKEKSSDSQWLKSVVSSGTLNDKVAALTVQVQESAVHCLKTLDILIGMAKKKGRRESIIAVDMLKELWMTLLLPNNRKLRKFSQHPLLSLVEIVHKGGGWDERD-----KRLILWYFEEQLK 324          
BLAST of mRNA_P-wetherbeei_contig15930.1.1 vs. uniprot
Match: A0A3M6USX9_POCDA (Uncharacterized protein (Fragment) n=5 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6USX9_POCDA)

HSP 1 Score: 99.0 bits (245), Expect = 2.260e-23
Identity = 55/141 (39.01%), Postives = 91/141 (64.54%), Query Frame = 1
Query:   13 REAARRLFDAEVAAWELRRARKQTGDDKWLAQVLRAGTLSDRVAALTLQVQESPPHRLAALDKLVDMAAQKDRRAAQLSLEALQDLFCSVLLPDGRRLARFEARGPRQLGEALR----WAERDPTGVGKALVLWHFEDEVR 423
            REAA  LF+ EV  ++  + ++++ D +WL  V+ +GTL+D+VAALT+QVQES  H L  LD L+ MA +K RR + ++++ L++L+ ++LLP+ R+L +F       L E +     W ERD     + L+LW FE++++
Sbjct:   21 REAAD-LFEQEVGIYDKMKVKEKSSDSQWLKSVVSSGTLNDKVAALTVQVQESAVHGLKTLDILIGMAKKKGRRESIIAVDMLKELWMTLLLPNNRKLKKFAQHPLLSLVEIVHKGGGWDERD-----RRLILWCFEEQLK 155          
BLAST of mRNA_P-wetherbeei_contig15930.1.1 vs. uniprot
Match: UPI0009E4CAB3 (CCAAT/enhancer-binding protein zeta-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4CAB3)

HSP 1 Score: 104 bits (259), Expect = 3.060e-23
Identity = 55/142 (38.73%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    1 VQRLREAARRLFDAEVAAWELRRARKQTGDDKWLAQVLRAGTLSDRVAALTLQVQESPPHRLAALDKLVDMAAQKDRRAAQLSLEALQDLFCSVLLPDGRRLARFEARGPRQLGEALR----WAERDPTGVGKALVLWHFED 414
            + +L + A  L + EV  ++  +A++++ D +WL  V+ +GTLSD+VAALT+Q+QES  HRL  LD L+ MA +K RR + ++++ L++L+ ++LLP+ R+L +F       L E +     W ERD     + L+LWHFE+
Sbjct:  184 IAKLCKEAADLLENEVNIYDKMKAKEKSSDSEWLKSVVSSGTLSDKVAALTVQIQESAVHRLKTLDILISMAKKKGRRESIIAVDMLKELWMTLLLPNNRKLRKFVQNPLTSLVEVVHKGGGWVERD-----RRLILWHFEE 320          
BLAST of mRNA_P-wetherbeei_contig15930.1.1 vs. uniprot
Match: UPI001EAFC625 (CCAAT/enhancer-binding protein zeta-like n=3 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFC625)

HSP 1 Score: 104 bits (259), Expect = 3.070e-23
Identity = 57/141 (40.43%), Postives = 87/141 (61.70%), Query Frame = 1
Query:    1 VQRLREAARRLFDAEVAAWELRRARKQTGDDKWLAQVLRAGTLSDRVAALTLQVQESPPHRLAALDKLVDMAAQKDRRAAQLSLEALQDLFCSVLLPDGRRLARFEARGPRQLGEALRWAERDPTGVGKALVLWHFEDEVR 423
            VQ++ + A +L   EVA +  +R   +  D KW+  VL +GTLSD++AALTL   ESP H L +++ LV+MA +K +R A  +++AL+DLF S LLP  R+L  F  +    L    R+A  +   + K L+LW FED+++
Sbjct:  203 VQQMEDFASKLLADEVALYTKQRENSKRSDTKWMKTVLASGTLSDKMAALTLLAGESPVHNLTSMESLVNMAKKKGKREAMAAVDALRDLFLSDLLPSHRKLKSFHQQS---LPGLERFASGNKDTIDKILMLWRFEDQLK 340          
BLAST of mRNA_P-wetherbeei_contig15930.1.1 vs. uniprot
Match: A0A0B7B7L4_9EUPU (CBF domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7B7L4_9EUPU)

HSP 1 Score: 103 bits (256), Expect = 7.810e-23
Identity = 54/134 (40.30%), Postives = 86/134 (64.18%), Query Frame = 1
Query:   22 ARRLFDAEVAAWELRRARKQTGDDKWLAQVLRAGTLSDRVAALTLQVQESPPHRLAALDKLVDMAAQKDRRAAQLSLEALQDLFCSVLLPDGRRLARFEARGPRQLGEALRWAERDPTGVGKALVLWHFEDEVR 423
            A+RL + EV+++  ++   +  + +WL  VL +GTL+D++AALTL +QESP H LA+LD L+ MA +K RR A L+++ L+DLF + LLPD R+L  F   G +   + L  A  +     K L++W+FE  ++
Sbjct:  207 AQRLMEDEVSSYSKQKDHSKRSEARWLKTVLVSGTLTDKMAALTLLIQESPVHNLASLDSLISMARKKGRREAMLAVDTLRDLFLTGLLPDDRKLRAF---GQQPFMKLLEMANGNIDARDKLLLMWYFEGLIK 337          
BLAST of mRNA_P-wetherbeei_contig15930.1.1 vs. uniprot
Match: A0A5D6XXB7_9STRA (CBF domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXB7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.440e-22
Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = 1
Query:   22 ARRLFDAEVAAWELRRARKQTGDDKWLAQVLRAGTLSDRVAALTLQVQESPPHRLAALDKLVDMAAQKDRRAAQLSLEALQDLFCSVLLPDGRRLARFEARGPRQLGEALRWAERDPTGVGKALVLWHFE 411
            A+RL +AEVA +E +++ + + DDK+LA ++R+GTL+DRVAALTL VQ +P H LA L +L+ MA++K RR + +++++L+DLF + LLPD RRL  F              A   P    +   LW FE
Sbjct:  127 AQRLLEAEVARFEAQKSARLSSDDKYLATMMRSGTLADRVAALTLTVQSAPFHNLARLSQLITMASKKARRESMMAVDSLKDLFINNLLPDDRRLRFFHQH-----------ALAHPDATDEHRALWFFE 245          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15930.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI2.710e-3650.64CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZC94_9STRA2.420e-3552.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L5C9_9PHAE2.300e-3045.83Reverse transcriptase domain-containing protein n=... [more]
UPI001B88E77C1.010e-2442.55CCAAT/enhancer-binding protein zeta-like n=1 Tax=G... [more]
A0A2B4RPP4_STYPI6.740e-2439.31CCAAT/enhancer-binding protein zeta n=1 Tax=Stylop... [more]
A0A3M6USX9_POCDA2.260e-2339.01Uncharacterized protein (Fragment) n=5 Tax=Pocillo... [more]
UPI0009E4CAB33.060e-2338.73CCAAT/enhancer-binding protein zeta-like n=1 Tax=O... [more]
UPI001EAFC6253.070e-2340.43CCAAT/enhancer-binding protein zeta-like n=3 Tax=H... [more]
A0A0B7B7L4_9EUPU7.810e-2340.30CBF domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A5D6XXB7_9STRA1.440e-2243.08CBF domain-containing protein n=1 Tax=Pythium bras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15930contigP-wetherbeei_contig15930:912..1334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPZ6
Preferred nameCEBPZ
PFAMsAAA_5,CBF
Model size423
Max annot lvl2759|Eukaryota
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
Exons1
Evalue4.45e-37
EggNOG OGsCOG5271@1|root,COG5593@1|root,KOG1808@2759|Eukaryota,KOG2038@2759|Eukaryota
Descriptionribosome biogenesis
Cds size423
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.8189273-CDS-P-wetherbeei_contig15930:911..13341683186071.8189273-CDS-P-wetherbeei_contig15930:911..1334Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15930 912..1334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15930.1.1prot_P-wetherbeei_contig15930.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15930 912..1334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15930.1.1

>prot_P-wetherbeei_contig15930.1.1 ID=prot_P-wetherbeei_contig15930.1.1|Name=mRNA_P-wetherbeei_contig15930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
VQRLREAARRLFDAEVAAWELRRARKQTGDDKWLAQVLRAGTLSDRVAAL
TLQVQESPPHRLAALDKLVDMAAQKDRRAAQLSLEALQDLFCSVLLPDGR
RLARFEARGPRQLGEALRWAERDPTGVGKALVLWHFEDEVR
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mRNA from alignment at P-wetherbeei_contig15930:912..1334+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15930.1.1 ID=mRNA_P-wetherbeei_contig15930.1.1|Name=mRNA_P-wetherbeei_contig15930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig15930:912..1334+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCAGCGGCTCCGCGAGGCCGCGCGGCGGCTTTTTGATGCGGAGGTCGC AGCGTGGGAGCTGCGGCGAGCTCGCAAGCAGACGGGCGACGACAAGTGGC TGGCGCAGGTGTTGCGCGCGGGCACGCTCTCCGACCGCGTCGCCGCGCTG ACGCTGCAGGTGCAGGAGTCGCCGCCGCACCGCCTGGCGGCGCTTGATAA GCTGGTGGATATGGCGGCACAGAAGGACCGGCGGGCGGCGCAGCTGTCGT TGGAGGCGCTGCAAGATCTGTTCTGCAGCGTGCTGCTGCCGGACGGGCGA CGACTGGCGCGGTTCGAGGCGCGAGGGCCGCGGCAGCTGGGGGAGGCTCT GCGGTGGGCGGAGCGGGACCCGACGGGCGTCGGGAAGGCACTCGTGCTCT GGCACTTCGAGGACGAGGTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15930:912..1334+

>mRNA_P-wetherbeei_contig15930.1.1 ID=mRNA_P-wetherbeei_contig15930.1.1|Name=mRNA_P-wetherbeei_contig15930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig15930:912..1334+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCAGCGGCTCCGCGAGGCCGCGCGGCGGCTTTTTGATGCGGAGGTCGC
AGCGTGGGAGCTGCGGCGAGCTCGCAAGCAGACGGGCGACGACAAGTGGC
TGGCGCAGGTGTTGCGCGCGGGCACGCTCTCCGACCGCGTCGCCGCGCTG
ACGCTGCAGGTGCAGGAGTCGCCGCCGCACCGCCTGGCGGCGCTTGATAA
GCTGGTGGATATGGCGGCACAGAAGGACCGGCGGGCGGCGCAGCTGTCGT
TGGAGGCGCTGCAAGATCTGTTCTGCAGCGTGCTGCTGCCGGACGGGCGA
CGACTGGCGCGGTTCGAGGCGCGAGGGCCGCGGCAGCTGGGGGAGGCTCT
GCGGTGGGCGGAGCGGGACCCGACGGGCGTCGGGAAGGCACTCGTGCTCT
GGCACTTCGAGGACGAGGTGCGC
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